Rmu_sc0016104.1_g000004

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016104.1
OG0000399
Physical Location & Seq
Reverse (-)
7222 .. 8304
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016104.1_g000004.1.cds

Sequence Viewer

Length: 1083 bp
atggctaagtggtcagatcttcctggagatcttcttgtgcatatcgccaaacagatggtcttaatagaagattttttggcttttggtagggtttgtaaatcatggaattctgccgccaccaaagaaaactatactggtggattcactcatcaaactccgttgcttatgctcagaaatttggtggtgggtattagtattactggtcccgggcatgcagtactttacaacctcaaaaaaggtagggtccttgatattaatattggatcctatctccggtatcgttcttctcttggatggctcatcccacaagaagataggaaatatctattgcatcctttcaaagacaaaaaaattgtgctgccactctttttcaatggttcggaaataacgaagtttgtcttatcatctgctccttctctgacatcagattacataatcatggttgctactgattaccttagagagttcgcattctggagaccaaaagacgatgcatggactataatatcatcaccagatcgctgctggatgccagatgaaggaagatacgatatagcttattatgaaggacaattttatatcgtggaaagcgacggccgtgtcttggtttgtgacattgaggaccctaagaaagcaaaaacaagggtcgttgtttcagagatgccaattctacatgagattgccgagaaattatacctggtaaaatcggccggcgtcttattgttggttatcagtcttcgggaaccatacagaagcactaactggtttagggttttcgaggtgccacttagtactggtaattggtcaaactcagtggaggtaaagaacttggggaattgtgccttgtttctgagtgaaaataattcttcattctctatacgggtctcagactactctgctttgaaggccaattgcatataccacgcaggtacgtgtttgggtgtttttagcatggaagatggaaagatggagcaaacatatttttataattatgaattttttgattcaaaacaaccatatgcatggattcagcagtatggatacagcggtgtttctatggagaatgaactcaccctcacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

360

Amino Acids

41.16

Weight (kDa)

6.12

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 987
AasI GACNNNNNNGTC 1 cut(s) 599
Acc36I ACCTGC 1 cut(s) 917
AccB1I GGYRCC 1 cut(s) 781
AciI CCGC 2 cut(s) 114, 1047
AclWI GGATC 2 cut(s) 258, 271
AcoI YGGCCR 2 cut(s) 595, 708
AcsI RAATTY 3 cut(s) 106, 175, 995
AcyI GRCGYC 1 cut(s) 714
AfaI GTAC 3 cut(s) 219, 793, 931
AfiI CCNNNNNNNGG 3 cut(s) 273, 539, 604
AflIII ACRYGT 1 cut(s) 932
AgsI TTSAA 4 cut(s) 340, 373, 904, 1008
AjnI CCWGG 2 cut(s) 22, 696
AluBI AGCT 1 cut(s) 557
AluI AGCT 1 cut(s) 557
Alw26I GTCTC 2 cut(s) 472, 889
AlwI GGATC 2 cut(s) 258, 271
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 3 cut(s) 595, 708, 906
ApeKI GCWGC 2 cut(s) 358, 522
ApoI RAATTY 3 cut(s) 106, 175, 995
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AseI ATTAAT 1 cut(s) 255
AspS9I GGNCC 3 cut(s) 203, 244, 622
AsuC2I CCSGG 2 cut(s) 207, 208
AsuHPI GGTGA 3 cut(s) 504, 1063, 1069
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 3 cut(s) 203, 244, 622
BaeI ACNNNNGTAYC 2 cut(s) 1033, 1066
BamHI GGATCC 1 cut(s) 263
BanI GGYRCC 1 cut(s) 781
BbsI GAAGAC 1 cut(s) 728
BbvI GCAGC 2 cut(s) 345, 509
BccI CCATC 4 cut(s) 49, 288, 953, 961
BceAI ACGGC 2 cut(s) 582, 610
BciT130I CCWGG 2 cut(s) 24, 698
BciVI GTATCC 1 cut(s) 1034
BcnI CCSGG 2 cut(s) 207, 208
BcoDI GTCTC 2 cut(s) 472, 889
BfuAI ACCTGC 1 cut(s) 917
BfuI GTATCC 1 cut(s) 1034
BglII AGATCT 2 cut(s) 16, 28
BisI GCNGC 3 cut(s) 114, 359, 523
BlsI GCNGC 3 cut(s) 115, 360, 524
BmcAI AGTACT 2 cut(s) 219, 793
Bme1390I CCNGG 4 cut(s) 24, 207, 208, 698
Bme18I GGWCC 3 cut(s) 203, 244, 622
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 3 cut(s) 203, 244, 622
BmiI GGNNCC 6 cut(s) 205, 245, 265, 624, 744, 783
BmrFI CCNGG 4 cut(s) 24, 207, 208, 698
BmsI GCATC 4 cut(s) 340, 481, 519, 651
BpiI GAAGAC 1 cut(s) 728
BpmI CTGGAG 2 cut(s) 45, 496
BpuMI CCSGG 2 cut(s) 207, 208
BsaAI YACGTR 1 cut(s) 933
BsaHI GRCGYC 1 cut(s) 714
BsaI GGTCTC 2 cut(s) 472, 889
BsaJI CCNNGG 1 cut(s) 206
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 3 cut(s) 273, 539, 604
Bse118I RCCGGY 1 cut(s) 710
Bse1I ACTGG 4 cut(s) 139, 205, 767, 799
BseBI CCWGG 2 cut(s) 24, 698
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 4 cut(s) 299, 300, 331, 534
BseLI CCNNNNNNNGG 3 cut(s) 273, 539, 604
BseMII CTCAG 4 cut(s) 184, 825, 842, 900
BseNI ACTGG 4 cut(s) 139, 205, 767, 799
BseX3I CGGCCG 2 cut(s) 595, 708
BseXI GCAGC 2 cut(s) 345, 509
Bsh1285I CGRYCG 2 cut(s) 598, 711
BshFI GGCC 3 cut(s) 597, 710, 908
BshNI GGYRCC 1 cut(s) 781
BsiEI CGRYCG 2 cut(s) 598, 711
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 3 cut(s) 207, 274, 711
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 3 cut(s) 273, 539, 604
BsmAI GTCTC 2 cut(s) 472, 889
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 3 cut(s) 597, 710, 908
Bso31I GGTCTC 2 cut(s) 472, 889
BsoBI CYCGRG 1 cut(s) 206
Bsp143I GATC 4 cut(s) 16, 28, 263, 517
BspACI CCGC 2 cut(s) 114, 1047
BspANI GGCC 3 cut(s) 597, 710, 908
BspCNI CTCAG 4 cut(s) 183, 824, 843, 899
BspLI GGNNCC 6 cut(s) 205, 245, 265, 624, 744, 783
BspMI ACCTGC 1 cut(s) 917
BspPI GGATC 2 cut(s) 258, 271
BspT107I GGYRCC 1 cut(s) 781
BspTNI GGTCTC 2 cut(s) 472, 889
BsrFI RCCGGY 1 cut(s) 710
BsrI ACTGG 4 cut(s) 139, 205, 767, 799
BssAI RCCGGY 1 cut(s) 710
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 4 cut(s) 16, 28, 263, 517
BssNI GRCGYC 1 cut(s) 714
Bst2UI CCWGG 2 cut(s) 24, 698
BstACI GRCGYC 1 cut(s) 714
BstBAI YACGTR 1 cut(s) 933
BstC8I GCNNGC 2 cut(s) 213, 712
BstDEI CTNAG 8 cut(s) 6, 170, 458, 627, 788, 811, 851, 886
BstF5I GGATG 4 cut(s) 299, 300, 331, 534
BstKTI GATC 4 cut(s) 19, 31, 266, 520
BstMAI GTCTC 2 cut(s) 472, 889
BstMBI GATC 4 cut(s) 16, 28, 263, 517
BstMCI CGRYCG 2 cut(s) 598, 711
BstMWI GCNNNNNNNGC 1 cut(s) 905
BstNI CCWGG 2 cut(s) 24, 698
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 4 cut(s) 22, 205, 206, 696
BstV1I GCAGC 2 cut(s) 345, 509
BstV2I GAAGAC 1 cut(s) 728
BstX2I RGATCY 3 cut(s) 16, 28, 263
BstXI CCANNNNNNTGG 2 cut(s) 55, 1023
BstYI RGATCY 3 cut(s) 16, 28, 263
BstZI CGGCCG 2 cut(s) 595, 708
BsuI GTATCC 1 cut(s) 1034
BsuRI GGCC 3 cut(s) 597, 710, 908
BtsCI GGATG 4 cut(s) 299, 300, 331, 534
BtsIMutI CAGTG 1 cut(s) 819
BveI ACCTGC 1 cut(s) 917
Cac8I GCNNGC 2 cut(s) 213, 712
Cfr10I RCCGGY 1 cut(s) 710
Cfr13I GGNCC 3 cut(s) 203, 244, 622
Cfr9I CCCGGG 1 cut(s) 206
CseI GACGC 1 cut(s) 703
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 3 cut(s) 218, 792, 930
CspCI CAANNNNNGTGG 2 cut(s) 795, 830
CviAII CATG 7 cut(s) 102, 212, 439, 495, 674, 952, 1023
CviJI RGCY 7 cut(s) 5, 80, 298, 557, 597, 710, 908
CviKI_1 RGCY 7 cut(s) 5, 80, 298, 557, 597, 710, 908
CviQI GTAC 3 cut(s) 218, 792, 930
DdeI CTNAG 8 cut(s) 6, 170, 458, 627, 788, 811, 851, 886
DpnI GATC 4 cut(s) 18, 30, 265, 519
DpnII GATC 4 cut(s) 16, 28, 263, 517
DrdI GACNNNNNNGTC 1 cut(s) 599
DseDI GACNNNNNNGTC 1 cut(s) 599
EaeI YGGCCR 2 cut(s) 595, 708
EagI CGGCCG 2 cut(s) 595, 708
EclXI CGGCCG 2 cut(s) 595, 708
Eco31I GGTCTC 2 cut(s) 472, 889
Eco47I GGWCC 3 cut(s) 203, 244, 622
Eco52I CGGCCG 2 cut(s) 595, 708
Eco88I CYCGRG 1 cut(s) 206
EcoO109I RGGNCCY 2 cut(s) 244, 622
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 22, 696
EcoT22I ATGCAT 2 cut(s) 496, 1024
FaeI CATG 7 cut(s) 105, 215, 442, 498, 677, 955, 1026
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FaqI GGGAC 1 cut(s) 189
FatI CATG 7 cut(s) 101, 211, 438, 494, 673, 951, 1022
FauNDI CATATG 1 cut(s) 1018
Fnu4HI GCNGC 3 cut(s) 114, 359, 523
FokI GGATG 4 cut(s) 287, 306, 318, 541
Fsp4HI GCNGC 3 cut(s) 114, 359, 523
GluI GCNGC 3 cut(s) 114, 359, 523
GsuI CTGGAG 2 cut(s) 45, 496
HaeIII GGCC 3 cut(s) 597, 710, 908
HapII CCGG 3 cut(s) 207, 274, 711
HgaI GACGC 1 cut(s) 703
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 7 cut(s) 105, 215, 442, 498, 677, 955, 1026
HinfI GANTC 3 cut(s) 141, 1004, 1027
HpaII CCGG 3 cut(s) 207, 274, 711
HphI GGTGA 3 cut(s) 504, 1063, 1069
Hpy188I TCNGA 8 cut(s) 16, 173, 382, 420, 427, 658, 852, 889
Hpy188III TCNNGA 2 cut(s) 475, 740
Hpy99I CGWCG 1 cut(s) 596
HpyAV CCTTC 4 cut(s) 423, 533, 560, 898
HpyCH4IV ACGT 1 cut(s) 932
HpyCH4V TGCA 6 cut(s) 40, 215, 331, 494, 915, 1022
HpyF10VI GCNNNNNNNGC 1 cut(s) 905
HpyF3I CTNAG 8 cut(s) 6, 170, 458, 627, 788, 811, 851, 886
HpySE526I ACGT 1 cut(s) 932
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 7 cut(s) 105, 215, 442, 498, 677, 955, 1026
KroI GCCGGC 1 cut(s) 710
KroNI GCCGGC 1 cut(s) 712
Kzo9I GATC 4 cut(s) 16, 28, 263, 517
LmnI GCTCC 2 cut(s) 415, 970
Lsp1109I GCAGC 2 cut(s) 345, 509
LweI GCATC 4 cut(s) 340, 481, 519, 651
MabI ACCWGGT 1 cut(s) 696
MaeII ACGT 1 cut(s) 932
MaeIII GTNAC 1 cut(s) 611
MalI GATC 4 cut(s) 18, 30, 265, 519
MboI GATC 4 cut(s) 16, 28, 263, 517
MboII GAAGA 9 cut(s) 11, 23, 80, 276, 323, 555, 728, 858, 968
MfeI CAATTG 1 cut(s) 910
MflI RGATCY 3 cut(s) 16, 28, 263
MnlI CCTC 4 cut(s) 239, 613, 772, 811
Mph1103I ATGCAT 2 cut(s) 496, 1024
MroNI GCCGGC 1 cut(s) 710
MseI TTAA 2 cut(s) 62, 255
MslI CAYNNNNRTG 2 cut(s) 437, 1021
MspA1I CMGCKG 1 cut(s) 1047
MspI CCGG 3 cut(s) 207, 274, 711
MspR9I CCNGG 4 cut(s) 24, 207, 208, 698
MunI CAATTG 1 cut(s) 910
Mva1269I GAATGC 1 cut(s) 470
MvaI CCWGG 2 cut(s) 24, 698
MwoI GCNNNNNNNGC 1 cut(s) 905
NaeI GCCGGC 1 cut(s) 712
NciI CCSGG 2 cut(s) 207, 208
NdeI CATATG 1 cut(s) 1018
NdeII GATC 4 cut(s) 16, 28, 263, 517
NgoMIV GCCGGC 1 cut(s) 710
NlaIII CATG 7 cut(s) 105, 215, 442, 498, 677, 955, 1026
NlaIV GGNNCC 6 cut(s) 205, 245, 265, 624, 744, 783
NmeAIII GCCGAG 1 cut(s) 709
NmuCI GTSAC 1 cut(s) 611
NsiI ATGCAT 2 cut(s) 496, 1024
NspI RCATGY 1 cut(s) 215
PaeI GCATGC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 2 cut(s) 386, 588
PctI GAATGC 1 cut(s) 470
PdiI GCCGGC 1 cut(s) 712
PfeI GAWTC 3 cut(s) 141, 1004, 1027
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 3 cut(s) 115, 360, 524
Ppu21I YACGTR 1 cut(s) 933
PpuMI RGGWCCY 2 cut(s) 244, 622
PshBI ATTAAT 1 cut(s) 255
PsiI TTATAA 1 cut(s) 987
Psp5II RGGWCCY 2 cut(s) 244, 622
Psp6I CCWGG 2 cut(s) 22, 696
PspGI CCWGG 2 cut(s) 22, 696
PspN4I GGNNCC 6 cut(s) 205, 245, 265, 624, 744, 783
PspPI GGNCC 3 cut(s) 203, 244, 622
PspPPI RGGWCCY 2 cut(s) 244, 622
PsuI RGATCY 3 cut(s) 16, 28, 263
RsaI GTAC 3 cut(s) 219, 793, 931
RsaNI GTAC 3 cut(s) 218, 792, 930
RseI CAYNNNNRTG 2 cut(s) 437, 1021
SaqAI TTAA 2 cut(s) 62, 255
SatI GCNGC 3 cut(s) 114, 359, 523
Sau3AI GATC 4 cut(s) 16, 28, 263, 517
Sau96I GGNCC 3 cut(s) 203, 244, 622
ScaI AGTACT 2 cut(s) 219, 793
ScrFI CCNGG 4 cut(s) 24, 207, 208, 698
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 4 cut(s) 340, 481, 519, 651
SinI GGWCC 3 cut(s) 203, 244, 622
SmaI CCCGGG 1 cut(s) 208
SmiMI CAYNNNNRTG 2 cut(s) 437, 1021
SphI GCATGC 1 cut(s) 215
SsiI CCGC 2 cut(s) 114, 1047
SspI AATATT 1 cut(s) 259
StyD4I CCNGG 4 cut(s) 22, 205, 206, 696
TaiI ACGT 1 cut(s) 935
TaqI TCGA 1 cut(s) 777
TatI WGTACW 2 cut(s) 217, 791
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 3 cut(s) 141, 1004, 1027
Tru1I TTAA 2 cut(s) 62, 255
Tru9I TTAA 2 cut(s) 62, 255
TscAI CASTG 1 cut(s) 819
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 2 cut(s) 358, 522
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 5 cut(s) 552, 579, 858, 1008, 1080
TspGWI ACGGA 1 cut(s) 147
TspMI CCCGGG 1 cut(s) 206
TspRI CASTG 1 cut(s) 819
VpaK11BI GGWCC 3 cut(s) 203, 244, 622
VspI ATTAAT 1 cut(s) 255
XapI RAATTY 3 cut(s) 106, 175, 995
XceI RCATGY 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 522
XmaI CCCGGG 1 cut(s) 206
ZrmI AGTACT 2 cut(s) 219, 793
Zsp2I ATGCAT 2 cut(s) 496, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.