Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Forward (+)

52384696 .. 52386136

Gene Structure 1441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25951

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCTTTCGTTAGAGGATTTTACTTCTTTTGGTGCAGTTTGCAAATCATGGAGATCAGTTGCGACCAGGGAAGTGTTCAATAGCAAACGACTAGGACCAACGCATCAAGCTCCTTTCCTCATCCTTTCGAAGAAGGAGGCTTCTGCAATCCGTATGTTTTACAACTTCAGAACAGGTAAGATCTGCAAACTATATCTGCCGGAAACCGAGAACAAACTCTGTTATTCTTCATTAGGATGGCTGGGGACTGTATCTAAGCATATGAGGATTGTTGCTCCAGATATGCCTGGGGAAATTCTTGGACGTCCTAATCTTCACTACATATATCTAGTGGAATCAGCAGGGACACTATTGGCGGTTTTATGTTTTGGCAATAAGTACGCGGAGAATTTAACTACTGGGTTTAGGATCTTTGAGGTCCCATTTGGTAATGGCAAATCATGGTGGAGCTCGGACATAAAGCTTGGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

157

Amino Acids

17.71

Weight (kDa)

9.46

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	307
AccII	CGCG	1 cut(s)	383
AciI	CCGC	2 cut(s)	356, 383
AclWI	GGATC	1 cut(s)	416
AcsI	RAATTY	2 cut(s)	294, 388
AcuI	CTGAAG	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	304
AfaI	GTAC	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	2 cut(s)	65, 286
AluBI	AGCT	3 cut(s)	110, 450, 463
AluI	AGCT	3 cut(s)	110, 450, 463
Alw21I	GWGCWC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	416
ApoI	RAATTY	2 cut(s)	294, 388
AspS9I	GGNCC	2 cut(s)	95, 418
AsuII	TTCGAA	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	95, 418
BanII	GRGCYC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	452
BccI	CCATC	1 cut(s)	231
BciT130I	CCWGG	2 cut(s)	67, 288
BfaI	CTAG	2 cut(s)	92, 329
BglII	AGATCT	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	67, 288
Bme18I	GGWCC	2 cut(s)	95, 418
BmgT120I	GGNCC	2 cut(s)	95, 418
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	2 cut(s)	67, 288
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	66, 287
Bse1I	ACTGG	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	67, 288
BseDI	CCNNGG	2 cut(s)	66, 287
BseGI	GGATG	2 cut(s)	120, 242
BseNI	ACTGG	1 cut(s)	403
BseYI	CCCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	3 cut(s)	259, 358, 404
BsmFI	GGGAC	3 cut(s)	259, 358, 404
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	3 cut(s)	53, 180, 408
BspACI	CCGC	2 cut(s)	356, 383
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	416
BspT104I	TTCGAA	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	66, 287
BssMI	GATC	3 cut(s)	53, 180, 408
BssNI	GRCGYC	1 cut(s)	304
Bst2UI	CCWGG	2 cut(s)	67, 288
Bst4CI	ACNGT	1 cut(s)	250
BstACI	GRCGYC	1 cut(s)	304
BstBI	TTCGAA	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	120, 242
BstFNI	CGCG	1 cut(s)	383
BstKTI	GATC	3 cut(s)	56, 183, 411
BstMBI	GATC	3 cut(s)	53, 180, 408
BstNI	CCWGG	2 cut(s)	67, 288
BstSCI	CCNGG	2 cut(s)	65, 286
BstUI	CGCG	1 cut(s)	383
BstX2I	RGATCY	2 cut(s)	180, 408
BstYI	RGATCY	2 cut(s)	180, 408
BtsCI	GGATG	2 cut(s)	120, 242
Cfr13I	GGNCC	2 cut(s)	95, 418
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	2 cut(s)	48, 441
CviJI	RGCY	5 cut(s)	110, 140, 241, 450, 463
CviKI_1	RGCY	5 cut(s)	110, 140, 241, 450, 463
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	3 cut(s)	55, 182, 410
DpnII	GATC	3 cut(s)	53, 180, 408
Ecl136II	GAGCTC	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	452
Eco47I	GGWCC	2 cut(s)	95, 418
Eco53kI	GAGCTC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	450
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	65, 286
EcoT38I	GRGCYC	1 cut(s)	452
FaeI	CATG	2 cut(s)	51, 444
FaqI	GGGAC	3 cut(s)	259, 358, 404
FatI	CATG	2 cut(s)	47, 440
FauNDI	CATATG	1 cut(s)	261
FokI	GGATG	2 cut(s)	107, 249
FriOI	GRGCYC	1 cut(s)	452
FspBI	CTAG	2 cut(s)	92, 329
GsaI	CCCAGC	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	261
HapII	CCGG	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	304
Hin1II	CATG	2 cut(s)	51, 444
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	170, 454
Hpy188III	TCNNGA	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	4 cut(s)	35, 42, 146, 186
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	304
Hsp92I	GRCGYC	1 cut(s)	304
Hsp92II	CATG	2 cut(s)	51, 444
Kzo9I	GATC	3 cut(s)	53, 180, 408
LmnI	GCTCC	3 cut(s)	115, 280, 447
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	2 cut(s)	92, 329
MaeII	ACGT	1 cut(s)	304
MalI	GATC	3 cut(s)	55, 182, 410
MboI	GATC	3 cut(s)	53, 180, 408
MboII	GAAGA	3 cut(s)	142, 219, 305
MflI	RGATCY	2 cut(s)	180, 408
MhlI	GDGCHC	1 cut(s)	452
MluCI	AATT	2 cut(s)	294, 388
MnlI	CCTC	5 cut(s)	7, 128, 130, 258, 409
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	235
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	67, 288
MvaI	CCWGG	2 cut(s)	67, 288
MvnI	CGCG	1 cut(s)	383
NdeI	CATATG	1 cut(s)	261
NdeII	GATC	3 cut(s)	53, 180, 408
NlaIII	CATG	2 cut(s)	51, 444
NlaIV	GGNNCC	1 cut(s)	420
NspV	TTCGAA	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	418
Psp124BI	GAGCTC	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	65, 286
PspFI	CCCAGC	1 cut(s)	241
PspGI	CCWGG	2 cut(s)	65, 286
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	2 cut(s)	95, 418
PspPPI	RGGWCCY	1 cut(s)	418
PsuI	RGATCY	2 cut(s)	180, 408
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	235
SacI	GAGCTC	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	392
Sau3AI	GATC	3 cut(s)	53, 180, 408
Sau96I	GGNCC	2 cut(s)	95, 418
ScrFI	CCNGG	2 cut(s)	67, 288
SduI	GDGCHC	1 cut(s)	452
SetI	ASST	6 cut(s)	112, 178, 307, 420, 452, 465
SfaNI	GCATC	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	128
SinI	GGWCC	2 cut(s)	95, 418
SmiMI	CAYNNNNRTG	1 cut(s)	235
Sse9I	AATT	2 cut(s)	294, 388
SsiI	CCGC	2 cut(s)	356, 383
SspMI	CTAG	2 cut(s)	92, 329
SstI	GAGCTC	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	65, 286
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	294, 388
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	95, 418
XapI	RAATTY	2 cut(s)	294, 388
XspI	CTAG	2 cut(s)	92, 329
ZraI	GACGTC	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.