F-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 94 - 362 | 2.7e-46 | KIB1-4 beta-propeller |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1083 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 926 |
| AccI | GTMKAC | 2 cut(s) | 9, 17 |
| AccII | CGCG | 2 cut(s) | 815, 1097 |
| AccIII | TCCGGA | 1 cut(s) | 1004 |
| AciI | CCGC | 5 cut(s) | 122, 261, 806, 815, 870 |
| AclWI | GGATC | 1 cut(s) | 1162 |
| AcoI | YGGCCR | 1 cut(s) | 682 |
| AcsI | RAATTY | 3 cut(s) | 278, 395, 1112 |
| AcuI | CTGAAG | 2 cut(s) | 752, 1038 |
| AdeI | CACNNNGTG | 1 cut(s) | 251 |
| AfaI | GTAC | 5 cut(s) | 163, 169, 175, 775, 800 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 246, 247, 581, 876 |
| AflIII | ACRYGT | 1 cut(s) | 1095 |
| AgsI | TTSAA | 9 cut(s) | 278, 400, 418, 437, 479, 989, 1129, 1172, 1184 |
| AhlI | ACTAGT | 1 cut(s) | 164 |
| AjiI | CACGTC | 1 cut(s) | 268 |
| AjnI | CCWGG | 1 cut(s) | 574 |
| AluBI | AGCT | 3 cut(s) | 455, 601, 821 |
| AluI | AGCT | 3 cut(s) | 455, 601, 821 |
| Alw21I | GWGCWC | 1 cut(s) | 823 |
| Alw26I | GTCTC | 3 cut(s) | 293, 845, 1054 |
| AlwI | GGATC | 1 cut(s) | 1162 |
| Ama87I | CYCGRG | 1 cut(s) | 30 |
| Aor13HI | TCCGGA | 1 cut(s) | 1004 |
| AoxI | GGCC | 1 cut(s) | 682 |
| ApoI | RAATTY | 3 cut(s) | 278, 395, 1112 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1097, 1129 |
| AseI | ATTAAT | 1 cut(s) | 624 |
| AspLEI | GCGC | 1 cut(s) | 815 |
| AspS9I | GGNCC | 1 cut(s) | 889 |
| AsuHPI | GGTGA | 1 cut(s) | 596 |
| AvaI | CYCGRG | 1 cut(s) | 30 |
| AvaII | GGWCC | 1 cut(s) | 889 |
| BanII | GRGCYC | 1 cut(s) | 823 |
| Bbv12I | GWGCWC | 1 cut(s) | 823 |
| BccI | CCATC | 4 cut(s) | 58, 121, 360, 440 |
| BceAI | ACGGC | 2 cut(s) | 669, 919 |
| BciT130I | CCWGG | 1 cut(s) | 576 |
| BcoDI | GTCTC | 3 cut(s) | 293, 845, 1054 |
| BcuI | ACTAGT | 1 cut(s) | 164 |
| BfaI | CTAG | 7 cut(s) | 153, 165, 177, 329, 456, 581, 777 |
| BfmI | CTRYAG | 2 cut(s) | 568, 874 |
| BglII | AGATCT | 1 cut(s) | 34 |
| BisI | GCNGC | 2 cut(s) | 123, 262 |
| BlsI | GCNGC | 2 cut(s) | 124, 263 |
| BmcAI | AGTACT | 2 cut(s) | 163, 175 |
| Bme1390I | CCNGG | 1 cut(s) | 576 |
| Bme18I | GGWCC | 1 cut(s) | 889 |
| BmeT110I | CYCGRG | 1 cut(s) | 30 |
| BmgBI | CACGTC | 1 cut(s) | 268 |
| BmgT120I | GGNCC | 1 cut(s) | 889 |
| BmiI | GGNNCC | 1 cut(s) | 891 |
| BmrFI | CCNGG | 1 cut(s) | 576 |
| BmsI | GCATC | 1 cut(s) | 322 |
| BpmI | CTGGAG | 1 cut(s) | 729 |
| BpuEI | CTTGAG | 1 cut(s) | 979 |
| BsaAI | YACGTR | 1 cut(s) | 532 |
| BsaJI | CCNNGG | 1 cut(s) | 245 |
| BsaWI | WCCGGW | 1 cut(s) | 1004 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 246, 247, 581, 876 |
| Bse1I | ACTGG | 3 cut(s) | 17, 171, 187 |
| BseAI | TCCGGA | 1 cut(s) | 1004 |
| BseBI | CCWGG | 1 cut(s) | 576 |
| BseDI | CCNNGG | 1 cut(s) | 245 |
| BseGI | GGATG | 2 cut(s) | 371, 1013 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 246, 247, 581, 876 |
| BseMII | CTCAG | 1 cut(s) | 915 |
| BseNI | ACTGG | 3 cut(s) | 17, 171, 187 |
| BsgI | GTGCAG | 1 cut(s) | 117 |
| Bsh1236I | CGCG | 2 cut(s) | 815, 1097 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1108 |
| BshFI | GGCC | 1 cut(s) | 684 |
| BsiEI | CGRYCG | 1 cut(s) | 1108 |
| BsiHKAI | GWGCWC | 1 cut(s) | 823 |
| BsiHKCI | CYCGRG | 1 cut(s) | 30 |
| BsiSI | CCGG | 1 cut(s) | 1005 |
| BslFI | GGGAC | 3 cut(s) | 629, 669, 875 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 246, 247, 581, 876 |
| BsmAI | GTCTC | 3 cut(s) | 293, 845, 1054 |
| BsmFI | GGGAC | 3 cut(s) | 629, 669, 875 |
| BsmI | GAATGC | 1 cut(s) | 815 |
| BsnI | GGCC | 1 cut(s) | 684 |
| BsoBI | CYCGRG | 1 cut(s) | 30 |
| Bsp1286I | GDGCHC | 1 cut(s) | 823 |
| Bsp13I | TCCGGA | 1 cut(s) | 1004 |
| Bsp143I | GATC | 3 cut(s) | 34, 637, 1154 |
| BspACI | CCGC | 5 cut(s) | 122, 261, 806, 815, 870 |
| BspANI | GGCC | 1 cut(s) | 684 |
| BspCNI | CTCAG | 1 cut(s) | 916 |
| BspEI | TCCGGA | 1 cut(s) | 1004 |
| BspFNI | CGCG | 2 cut(s) | 815, 1097 |
| BspHI | TCATGA | 1 cut(s) | 1032 |
| BspLI | GGNNCC | 1 cut(s) | 891 |
| BspMAI | CTGCAG | 1 cut(s) | 572 |
| BspPI | GGATC | 1 cut(s) | 1162 |
| BsrI | ACTGG | 3 cut(s) | 17, 171, 187 |
| BssECI | CCNNGG | 1 cut(s) | 245 |
| BssMI | GATC | 3 cut(s) | 34, 637, 1154 |
| Bst2UI | CCWGG | 1 cut(s) | 576 |
| Bst4CI | ACNGT | 6 cut(s) | 274, 287, 379, 405, 677, 798 |
| Bst6I | CTCTTC | 2 cut(s) | 848, 1057 |
| BstBAI | YACGTR | 1 cut(s) | 532 |
| BstC8I | GCNNGC | 1 cut(s) | 259 |
| BstDEI | CTNAG | 1 cut(s) | 924 |
| BstDSI | CCRYGG | 1 cut(s) | 245 |
| BstF5I | GGATG | 2 cut(s) | 371, 1013 |
| BstFNI | CGCG | 2 cut(s) | 815, 1097 |
| BstHHI | GCGC | 1 cut(s) | 815 |
| BstKTI | GATC | 3 cut(s) | 37, 640, 1157 |
| BstMAI | GTCTC | 3 cut(s) | 293, 845, 1054 |
| BstMBI | GATC | 3 cut(s) | 34, 637, 1154 |
| BstMCI | CGRYCG | 1 cut(s) | 1108 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 95, 812 |
| BstNI | CCWGG | 1 cut(s) | 576 |
| BstNSI | RCATGY | 1 cut(s) | 425 |
| BstSCI | CCNGG | 1 cut(s) | 574 |
| BstSFI | CTRYAG | 2 cut(s) | 568, 874 |
| BstSNI | TACGTA | 1 cut(s) | 532 |
| BstUI | CGCG | 2 cut(s) | 815, 1097 |
| BstX2I | RGATCY | 1 cut(s) | 34 |
| BstYI | RGATCY | 1 cut(s) | 34 |
| BsuRI | GGCC | 1 cut(s) | 684 |
| BtgI | CCRYGG | 1 cut(s) | 245 |
| BtgZI | GCGATG | 1 cut(s) | 140 |
| BtrI | CACGTC | 1 cut(s) | 268 |
| BtsCI | GGATG | 2 cut(s) | 371, 1013 |
| BtsI | GCAGTG | 1 cut(s) | 291 |
| BtsIMutI | CAGTG | 6 cut(s) | 180, 291, 375, 640, 993, 1062 |
| Cac8I | GCNNGC | 1 cut(s) | 259 |
| CciI | TCATGA | 1 cut(s) | 1032 |
| CfoI | GCGC | 1 cut(s) | 815 |
| Cfr13I | GGNCC | 1 cut(s) | 889 |
| CseI | GACGC | 1 cut(s) | 1086 |
| Csp6I | GTAC | 5 cut(s) | 162, 168, 174, 774, 799 |
| CviAII | CATG | 6 cut(s) | 111, 422, 427, 538, 912, 1033 |
| CviJI | RGCY | 8 cut(s) | 5, 370, 412, 455, 601, 684, 821, 1016 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 370, 412, 455, 601, 684, 821, 1016 |
| CviQI | GTAC | 5 cut(s) | 162, 168, 174, 774, 799 |
| DdeI | CTNAG | 1 cut(s) | 924 |
| DpnI | GATC | 3 cut(s) | 36, 639, 1156 |
| DpnII | GATC | 3 cut(s) | 34, 637, 1154 |
| DraI | TTTAAA | 1 cut(s) | 1141 |
| DraIII | CACNNNGTG | 1 cut(s) | 251 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 926 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 926 |
| EaeI | YGGCCR | 1 cut(s) | 682 |
| Eam1104I | CTCTTC | 2 cut(s) | 848, 1057 |
| EarI | CTCTTC | 2 cut(s) | 848, 1057 |
| EciI | GGCGGA | 1 cut(s) | 821 |
| Ecl136II | GAGCTC | 1 cut(s) | 821 |
| Eco105I | TACGTA | 1 cut(s) | 532 |
| Eco24I | GRGCYC | 1 cut(s) | 823 |
| Eco47I | GGWCC | 1 cut(s) | 889 |
| Eco53kI | GAGCTC | 1 cut(s) | 821 |
| Eco57I | CTGAAG | 2 cut(s) | 752, 1038 |
| Eco88I | CYCGRG | 1 cut(s) | 30 |
| EcoICRI | GAGCTC | 1 cut(s) | 821 |
| EcoO109I | RGGNCCY | 1 cut(s) | 889 |
| EcoRI | GAATTC | 1 cut(s) | 395 |
| EcoRII | CCWGG | 1 cut(s) | 574 |
| EcoT38I | GRGCYC | 1 cut(s) | 823 |
| FaeI | CATG | 6 cut(s) | 114, 425, 430, 541, 915, 1036 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 482, 514, 958, 990 |
| FaqI | GGGAC | 3 cut(s) | 629, 669, 875 |
| FatI | CATG | 6 cut(s) | 110, 421, 426, 537, 911, 1032 |
| FauI | CCCGC | 1 cut(s) | 808 |
| FblI | GTMKAC | 2 cut(s) | 9, 17 |
| Fnu4HI | GCNGC | 2 cut(s) | 123, 262 |
| FokI | GGATG | 2 cut(s) | 378, 1020 |
| FriOI | GRGCYC | 1 cut(s) | 823 |
| Fsp4HI | GCNGC | 2 cut(s) | 123, 262 |
| FspBI | CTAG | 7 cut(s) | 153, 165, 177, 329, 456, 581, 777 |
| GlaI | GCGC | 1 cut(s) | 814 |
| GluI | GCNGC | 2 cut(s) | 123, 262 |
| GsuI | CTGGAG | 1 cut(s) | 729 |
| HaeIII | GGCC | 1 cut(s) | 684 |
| HapII | CCGG | 1 cut(s) | 1005 |
| HgaI | GACGC | 1 cut(s) | 1086 |
| HhaI | GCGC | 1 cut(s) | 815 |
| Hin1II | CATG | 6 cut(s) | 114, 425, 430, 541, 915, 1036 |
| Hin6I | GCGC | 1 cut(s) | 813 |
| HinP1I | GCGC | 1 cut(s) | 813 |
| HincII | GTYRAC | 1 cut(s) | 10 |
| HindII | GTYRAC | 1 cut(s) | 10 |
| HinfI | GANTC | 5 cut(s) | 508, 860, 920, 961, 1168 |
| HpaII | CCGG | 1 cut(s) | 1005 |
| HphI | GGTGA | 1 cut(s) | 596 |
| Hpy166II | GTNNAC | 3 cut(s) | 10, 18, 673 |
| Hpy188I | TCNGA | 3 cut(s) | 526, 642, 925 |
| Hpy188III | TCNNGA | 5 cut(s) | 32, 746, 958, 1005, 1033 |
| Hpy8I | GTNNAC | 3 cut(s) | 10, 18, 673 |
| Hpy99I | CGWCG | 2 cut(s) | 269, 508 |
| HpyAV | CCTTC | 6 cut(s) | 251, 424, 522, 727, 988, 1135 |
| HpyCH4III | ACNGT | 6 cut(s) | 274, 287, 379, 405, 677, 798 |
| HpyCH4IV | ACGT | 2 cut(s) | 267, 531 |
| HpyCH4V | TGCA | 6 cut(s) | 98, 105, 257, 296, 570, 1023 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 95, 812 |
| HpyF3I | CTNAG | 1 cut(s) | 924 |
| HpySE526I | ACGT | 2 cut(s) | 267, 531 |
| Hsp92II | CATG | 6 cut(s) | 114, 425, 430, 541, 915, 1036 |
| HspAI | GCGC | 1 cut(s) | 813 |
| Kpn2I | TCCGGA | 1 cut(s) | 1004 |
| Kzo9I | GATC | 3 cut(s) | 34, 637, 1154 |
| LmnI | GCTCC | 3 cut(s) | 598, 748, 818 |
| LweI | GCATC | 1 cut(s) | 322 |
| MaeI | CTAG | 7 cut(s) | 153, 165, 177, 329, 456, 581, 777 |
| MaeII | ACGT | 2 cut(s) | 267, 531 |
| MaeIII | GTNAC | 4 cut(s) | 268, 373, 405, 991 |
| MalI | GATC | 3 cut(s) | 36, 639, 1156 |
| MboI | GATC | 3 cut(s) | 34, 637, 1154 |
| MboII | GAAGA | 6 cut(s) | 348, 491, 835, 946, 966, 1044 |
| MfeI | CAATTG | 1 cut(s) | 1018 |
| MflI | RGATCY | 1 cut(s) | 34 |
| MhlI | GDGCHC | 1 cut(s) | 823 |
| MluCI | AATT | 8 cut(s) | 278, 323, 395, 589, 659, 1018, 1112, 1129 |
| MluI | ACGCGT | 1 cut(s) | 1095 |
| MlyI | GAGTC | 3 cut(s) | 517, 914, 970 |
| MnlI | CCTC | 8 cut(s) | 39, 70, 124, 222, 479, 774, 880, 919 |
| MroI | TCCGGA | 1 cut(s) | 1004 |
| MseI | TTAA | 4 cut(s) | 624, 789, 897, 1140 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1070 |
| MspA1I | CMGCKG | 1 cut(s) | 122 |
| MspI | CCGG | 1 cut(s) | 1005 |
| MspR9I | CCNGG | 1 cut(s) | 576 |
| MunI | CAATTG | 1 cut(s) | 1018 |
| Mva1269I | GAATGC | 1 cut(s) | 815 |
| MvaI | CCWGG | 1 cut(s) | 576 |
| MvnI | CGCG | 2 cut(s) | 815, 1097 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 95, 812 |
| NdeII | GATC | 3 cut(s) | 34, 637, 1154 |
| NlaIII | CATG | 6 cut(s) | 114, 425, 430, 541, 915, 1036 |
| NlaIV | GGNNCC | 1 cut(s) | 891 |
| NmuCI | GTSAC | 3 cut(s) | 268, 373, 991 |
| NspI | RCATGY | 1 cut(s) | 425 |
| PaeR7I | CTCGAG | 1 cut(s) | 30 |
| PagI | TCATGA | 1 cut(s) | 1032 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1101 |
| PctI | GAATGC | 1 cut(s) | 815 |
| PfeI | GAWTC | 2 cut(s) | 860, 1168 |
| PkrI | GCNGC | 2 cut(s) | 124, 263 |
| PleI | GAGTC | 3 cut(s) | 516, 914, 969 |
| PpsI | GAGTC | 3 cut(s) | 516, 914, 969 |
| Ppu21I | YACGTR | 1 cut(s) | 532 |
| PpuMI | RGGWCCY | 1 cut(s) | 889 |
| PshBI | ATTAAT | 1 cut(s) | 624 |
| PsiI | TTATAA | 1 cut(s) | 1083 |
| Psp124BI | GAGCTC | 1 cut(s) | 823 |
| Psp5II | RGGWCCY | 1 cut(s) | 889 |
| Psp6I | CCWGG | 1 cut(s) | 574 |
| PspGI | CCWGG | 1 cut(s) | 574 |
| PspN4I | GGNNCC | 1 cut(s) | 891 |
| PspPI | GGNCC | 1 cut(s) | 889 |
| PspPPI | RGGWCCY | 1 cut(s) | 889 |
| PstI | CTGCAG | 1 cut(s) | 572 |
| PsuI | RGATCY | 1 cut(s) | 34 |
| RsaI | GTAC | 5 cut(s) | 163, 169, 175, 775, 800 |
| RsaNI | GTAC | 5 cut(s) | 162, 168, 174, 774, 799 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1070 |
| SacI | GAGCTC | 1 cut(s) | 823 |
| SalI | GTCGAC | 1 cut(s) | 8 |
| SaqAI | TTAA | 4 cut(s) | 624, 789, 897, 1140 |
| SatI | GCNGC | 2 cut(s) | 123, 262 |
| Sau3AI | GATC | 3 cut(s) | 34, 637, 1154 |
| Sau96I | GGNCC | 1 cut(s) | 889 |
| ScaI | AGTACT | 2 cut(s) | 163, 175 |
| SchI | GAGTC | 3 cut(s) | 517, 914, 970 |
| ScrFI | CCNGG | 1 cut(s) | 576 |
| SduI | GDGCHC | 1 cut(s) | 823 |
| SfaNI | GCATC | 1 cut(s) | 322 |
| SfcI | CTRYAG | 2 cut(s) | 568, 874 |
| Sfr274I | CTCGAG | 1 cut(s) | 30 |
| SinI | GGWCC | 1 cut(s) | 889 |
| SlaI | CTCGAG | 1 cut(s) | 30 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1070 |
| SmlI | CTYRAG | 2 cut(s) | 30, 958 |
| SmoI | CTYRAG | 2 cut(s) | 30, 958 |
| SnaBI | TACGTA | 1 cut(s) | 532 |
| SpeI | ACTAGT | 1 cut(s) | 164 |
| Sse9I | AATT | 8 cut(s) | 278, 323, 395, 589, 659, 1018, 1112, 1129 |
| SsiI | CCGC | 5 cut(s) | 122, 261, 806, 815, 870 |
| SspI | AATATT | 2 cut(s) | 622, 628 |
| SspMI | CTAG | 7 cut(s) | 153, 165, 177, 329, 456, 581, 777 |
| SstI | GAGCTC | 1 cut(s) | 823 |
| StyD4I | CCNGG | 1 cut(s) | 574 |
| TaaI | ACNGT | 6 cut(s) | 274, 287, 379, 405, 677, 798 |
| TaiI | ACGT | 2 cut(s) | 270, 534 |
| TaqI | TCGA | 6 cut(s) | 9, 31, 506, 721, 885, 1104 |
| TaqII | GACCGA | 1 cut(s) | 1122 |
| TasI | AATT | 8 cut(s) | 278, 323, 395, 589, 659, 1018, 1112, 1129 |
| TatI | WGTACW | 3 cut(s) | 161, 173, 798 |
| TauI | GCSGC | 2 cut(s) | 125, 264 |
| TfiI | GAWTC | 2 cut(s) | 860, 1168 |
| Tru1I | TTAA | 4 cut(s) | 624, 789, 897, 1140 |
| Tru9I | TTAA | 4 cut(s) | 624, 789, 897, 1140 |
| TscAI | CASTG | 6 cut(s) | 187, 298, 382, 640, 1000, 1062 |
| TseFI | GTSAC | 3 cut(s) | 268, 373, 991 |
| Tsp45I | GTSAC | 3 cut(s) | 268, 373, 991 |
| TspDTI | ATGAA | 6 cut(s) | 60, 443, 533, 873, 1021, 1049 |
| TspGWI | ACGGA | 2 cut(s) | 35, 611 |
| TspRI | CASTG | 6 cut(s) | 187, 298, 382, 640, 1000, 1062 |
| VpaK11BI | GGWCC | 1 cut(s) | 889 |
| VspI | ATTAAT | 1 cut(s) | 624 |
| XapI | RAATTY | 3 cut(s) | 278, 395, 1112 |
| XceI | RCATGY | 1 cut(s) | 425 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 61 |
| XhoI | CTCGAG | 1 cut(s) | 30 |
| XmiI | GTMKAC | 2 cut(s) | 9, 17 |
| XspI | CTAG | 7 cut(s) | 153, 165, 177, 329, 456, 581, 777 |
| ZrmI | AGTACT | 2 cut(s) | 163, 175 |