Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Forward (+)

26441225 .. 26443689

Gene Structure 2465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATACCGGTGGCAAAAGAAAGGAGGCCTTCATTGGCTAACTGGTCAGATCTTCCTCAAGATCTTGCTATCTCTATTGCCAAACGGATGGTTTGCATGGAGGACTTTTTATCTTTTGGGGTGGTCTGTAAATCATGGAGATCCAGTGCCACAAAAGAAAACTTTATTGGCGGATTAAAACATCTAGTTCTGTTCCTTATATTACCCGAGAAGGAGGGCACGGCCAATCGTGATTTATACAACTTGACAAAAGATCGCCACCACCAAGCGACTGCGCATAGGGCGGGGGGAAACCCCAACCAACCCGTCGCTGATCGAGGACCCACGGCCATCAAAGGCTTCGACACAGCTTCCTTTATTGGTTCTTCAGATTTGAAAACGGATATGAGAATCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

133

Amino Acids

14.6

Weight (kDa)

9.3

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 55	3.5e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	276
AciI	CCGC	2 cut(s)	171, 284
AclWI	GGATC	1 cut(s)	135
AcoI	YGGCCR	2 cut(s)	222, 327
AcuI	CTGAAG	1 cut(s)	351
AgeI	ACCGGT	1 cut(s)	7
AgsI	TTSAA	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
AlwI	GGATC	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	3 cut(s)	26, 222, 327
AsiGI	ACCGGT	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	221
BccI	CCATC	2 cut(s)	82, 338
BceAI	ACGGC	2 cut(s)	237, 342
BfaI	CTAG	1 cut(s)	185
BglII	AGATCT	2 cut(s)	49, 61
Bme18I	GGWCC	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	2 cut(s)	47, 144
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	47, 144
BseSI	GKGCMC	1 cut(s)	221
BshFI	GGCC	3 cut(s)	28, 224, 329
BshTI	ACCGGT	1 cut(s)	7
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	8
BsnI	GGCC	3 cut(s)	28, 224, 329
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	5 cut(s)	49, 61, 140, 253, 313
BspACI	CCGC	2 cut(s)	171, 284
BspANI	GGCC	3 cut(s)	28, 224, 329
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	2 cut(s)	47, 144
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	5 cut(s)	49, 61, 140, 253, 313
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	5 cut(s)	52, 64, 143, 256, 316
BstMBI	GATC	5 cut(s)	49, 61, 140, 253, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstSLI	GKGCMC	1 cut(s)	221
BstX2I	RGATCY	3 cut(s)	49, 61, 140
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	3 cut(s)	49, 61, 140
BsuRI	GGCC	3 cut(s)	28, 224, 329
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	151
CfoI	GCGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	320
CspAI	ACCGGT	1 cut(s)	7
CviAII	CATG	2 cut(s)	97, 135
CviJI	RGCY	6 cut(s)	28, 38, 224, 329, 339, 350
CviKI_1	RGCY	6 cut(s)	28, 38, 224, 329, 339, 350
DpnI	GATC	5 cut(s)	51, 63, 142, 255, 315
DpnII	GATC	5 cut(s)	49, 61, 140, 253, 313
EaeI	YGGCCR	2 cut(s)	222, 327
EciI	GGCGGA	1 cut(s)	186
Eco147I	AGGCCT	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	320
FaeI	CATG	2 cut(s)	100, 138
FaiI	YATR	7 cut(s)	98, 136, 200, 238, 279, 386, 397
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FatI	CATG	2 cut(s)	96, 134
FauI	CCCGC	1 cut(s)	277
FokI	GGATG	1 cut(s)	100
FspBI	CTAG	1 cut(s)	185
FspI	TGCGCA	1 cut(s)	276
GlaI	GCGC	1 cut(s)	276
HaeIII	GGCC	3 cut(s)	28, 224, 329
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	100, 138
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	49, 370
Hpy188III	TCNNGA	2 cut(s)	59, 230
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	39, 205
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	100, 138
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	5 cut(s)	49, 61, 140, 253, 313
LpnPI	CCDG	3 cut(s)	21, 28, 157
MaeI	CTAG	1 cut(s)	185
MalI	GATC	5 cut(s)	51, 63, 142, 255, 315
MboI	GATC	5 cut(s)	49, 61, 140, 253, 313
MboII	GAAGA	2 cut(s)	44, 357
MflI	RGATCY	3 cut(s)	49, 61, 140
MhlI	GDGCHC	1 cut(s)	221
MnlI	CCTC	5 cut(s)	18, 66, 94, 208, 311
MseI	TTAA	1 cut(s)	176
MspI	CCGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	5 cut(s)	49, 61, 140, 253, 313
NlaIII	CATG	2 cut(s)	100, 138
NlaIV	GGNNCC	1 cut(s)	322
NsbI	TGCGCA	1 cut(s)	276
PceI	AGGCCT	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	390
PinAI	ACCGGT	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	320
PspPPI	RGGWCCY	1 cut(s)	320
PsuI	RGATCY	3 cut(s)	49, 61, 140
SaqAI	TTAA	1 cut(s)	176
Sau3AI	GATC	5 cut(s)	49, 61, 140, 253, 313
Sau96I	GGNCC	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	1 cut(s)	352
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	2 cut(s)	171, 284
SspMI	CTAG	1 cut(s)	185
StuI	AGGCCT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	316, 342
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	21
TspGWI	ACGGA	2 cut(s)	100, 395
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	320
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.