Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Reverse (-)

16664000 .. 16664476

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1079000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTTCACTGGGCGGGTCTTCCTCGAGAGCTTATTTTCTCTTTAGCTGAACGTATGGGTTCCTTGGAGGAGTTCATTGTTTTTGGTGCAGTTTGTAAATCGTGGAGATCAGTTGCGACCAAAGAAAACTACTTTACTAATGAATCCTACTCCTTATTAAATGATCTAACTTATTATGAGGGACAACTTTATGCCGTGAACTATTATGGTCATGTTTTTATTTGTGATATTGAAGATCCTAAGCATGCAGAAGTAAGGATTGTTGCTCCAGAATTTCCAAAGGAATATTTGGGTCGTATGATGCAAATTAAAGTAGCTTATCTGGTGGAATCAGCCGGGGACCTGTTGGTGGTTTTGTGTTTTTTCAACCCGAAGACAAAGTTCCATGCAACTACTGGCTGCAGAGTTTTCAAGGTCCTATTTAGTGACTCGGAGGTAAACAATCTTGTGCAGAAATGCTTCTTCCTTCTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

159

Amino Acids

18.22

Weight (kDa)

5.8

Isoelectric Point (pI)

23.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	33 - 156	6.8e-16	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	3 cut(s)	233, 367, 412
AluBI	AGCT	3 cut(s)	31, 47, 317
AluI	AGCT	3 cut(s)	31, 47, 317
AlwI	GGATC	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	399
ApoI	RAATTY	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	340, 415
AsuC2I	CCSGG	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	2 cut(s)	340, 415
BbsI	GAAGAC	2 cut(s)	11, 380
BbvI	GCAGC	1 cut(s)	386
BceAI	ACGGC	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	337
BfmI	CTRYAG	1 cut(s)	400
BisI	GCNGC	1 cut(s)	400
BlsI	GCNGC	1 cut(s)	401
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	2 cut(s)	340, 415
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	340, 415
BmiI	GGNNCC	2 cut(s)	61, 341
BmrFI	CCNGG	1 cut(s)	337
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	19
BpiI	GAAGAC	2 cut(s)	11, 380
BpmI	CTGGAG	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	63, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	2 cut(s)	14, 400
BseDI	CCNNGG	2 cut(s)	63, 336
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseNI	ACTGG	2 cut(s)	14, 400
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	386
BsgI	GTGCAG	2 cut(s)	108, 470
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	2 cut(s)	195, 353
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmFI	GGGAC	2 cut(s)	195, 353
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	107, 163, 235
BspACI	CCGC	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	61, 341
BspMAI	CTGCAG	1 cut(s)	404
BspPI	GGATC	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	14, 400
BssECI	CCNNGG	2 cut(s)	63, 336
BssMI	GATC	3 cut(s)	107, 163, 235
BssT1I	CCWWGG	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	240
BstKTI	GATC	3 cut(s)	110, 166, 238
BstMBI	GATC	3 cut(s)	107, 163, 235
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	386
BstV2I	GAAGAC	2 cut(s)	11, 380
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	340, 415
CviAII	CATG	3 cut(s)	212, 245, 386
CviJI	RGCY	5 cut(s)	31, 47, 317, 335, 399
CviKI_1	RGCY	5 cut(s)	31, 47, 317, 335, 399
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	3 cut(s)	109, 165, 237
DpnII	GATC	3 cut(s)	107, 163, 235
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	2 cut(s)	340, 415
Eco88I	CYCGRG	1 cut(s)	24
EcoO109I	RGGNCCY	2 cut(s)	340, 415
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	215, 248, 389
FaiI	YATR	8 cut(s)	56, 177, 192, 207, 213, 246, 299, 387
FaqI	GGGAC	2 cut(s)	195, 353
FatI	CATG	3 cut(s)	211, 244, 385
FauI	CCCGC	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	400
GluI	GCNGC	1 cut(s)	400
GsuI	CTGGAG	1 cut(s)	252
HapII	CCGG	1 cut(s)	336
Hin1II	CATG	3 cut(s)	215, 248, 389
HinfI	GANTC	3 cut(s)	143, 329, 428
HpaII	CCGG	1 cut(s)	336
Hpy166II	GTNNAC	3 cut(s)	7, 199, 439
Hpy188I	TCNGA	1 cut(s)	433
Hpy188III	TCNNGA	2 cut(s)	26, 269
Hpy8I	GTNNAC	3 cut(s)	7, 199, 439
HpyAV	CCTTC	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	6 cut(s)	89, 248, 304, 389, 402, 451
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	3 cut(s)	215, 248, 389
Kzo9I	GATC	3 cut(s)	107, 163, 235
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	282, 308, 349, 356, 381
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	1 cut(s)	291
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	3 cut(s)	109, 165, 237
MboI	GATC	3 cut(s)	107, 163, 235
MboII	GAAGA	4 cut(s)	11, 245, 385, 454
MflI	RGATCY	1 cut(s)	235
MluCI	AATT	2 cut(s)	272, 306
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	4 cut(s)	33, 61, 172, 427
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	2 cut(s)	158, 309
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	337
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	3 cut(s)	107, 163, 235
NlaIII	CATG	3 cut(s)	215, 248, 389
NlaIV	GGNNCC	2 cut(s)	61, 341
NmuCI	GTSAC	1 cut(s)	425
NspI	RCATGY	1 cut(s)	248
PaeI	GCATGC	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	143, 329
PkrI	GCNGC	1 cut(s)	401
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PpuMI	RGGWCCY	2 cut(s)	340, 415
Psp5II	RGGWCCY	2 cut(s)	340, 415
PspN4I	GGNNCC	2 cut(s)	61, 341
PspPI	GGNCC	2 cut(s)	340, 415
PspPPI	RGGWCCY	2 cut(s)	340, 415
PstI	CTGCAG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	158, 309
SatI	GCNGC	1 cut(s)	400
Sau3AI	GATC	3 cut(s)	107, 163, 235
Sau96I	GGNCC	2 cut(s)	340, 415
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	337
SetI	ASST	7 cut(s)	33, 49, 55, 319, 345, 417, 438
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	400
Sfr274I	CTCGAG	1 cut(s)	24
SinI	GGWCC	2 cut(s)	340, 415
SlaI	CTCGAG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	2 cut(s)	272, 306
SsiI	CCGC	1 cut(s)	14
SspI	AATATT	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	63
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	25
TasI	AATT	2 cut(s)	272, 306
TfiI	GAWTC	2 cut(s)	143, 329
Tru1I	TTAA	2 cut(s)	158, 309
Tru9I	TTAA	2 cut(s)	158, 309
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	399
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	64, 156
TspRI	CASTG	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	340, 415
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XhoI	CTCGAG	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.