FvH4_5g01761

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000399
Physical Location & Seq
Reverse (-)
1121471 .. 1122481
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01761.t1

Sequence Viewer

Length: 1011 bp
ATGGTGGATGTGTTTTCTTTTGCTGCTGTCTGTAAATCATGGAGATCCGTCGCAACAAAAGAAGATTTCACTAGTCTAGTAGCACATCAAGTTCCTCTATTGCTTGCACTCTCACGTGATGAGAGCACCAATGAGCTTCACAACCTGACCAAAAATAAAGTTTCCGAAGTTCTTATGCCGGAAGCTAAAGGGGAACGATATTATTCTTCATATTTGGGATGGGTTATGTCTGTGTCTACTGAAGATATGAAAGTTAGTCTGTTCAATCCCTTGAAAATAAATGAGTCTCAGATTGAGTTGCCAGATTTTGATCCCTCCAAAATGTATTCTCATATTCAGCCATGCCCTGAGCATTTTCTGAAGAAGTTTGTGTTATCTTCAAGTCCTTCTCGGACATCAGATTACATAATCATGGTTCTTGGTAAACACATATCACTAGGATTTTGCAGACCAGGAGACAAGCAATGGAGGTTCATAGATACAACTGGGGATGATGAACTGATAAACTGGGACGATAAAACACTCAACGACATTATCTACTATAAGGGACAATTTTACGTGGTAGGTCGTCTTGGCACCATCTTTGTTTGTGACATTGAAGACCCTCAGCAACCAAAACTCAGAGTTGTGGTTCCACAGATGCCTGGATACATTCGTCGTCATGGAAGTGTTTATGAGCAAATATACCTCGTGGAATCTGCAGAGGATTTATTTGTTGTTTCACGTTTCTGGGGTAATCTACAGCAGCTAACAGCTTTCAAGGTGCCATTGCGTGATGGCAACTGGTGGCCATACTCATTAGAGGTACGTAATTTGGGTAAAAGAACCTGGTTCATTGGTAGCAGCAGTACTAGTGTCTCTATTGATACAGGATCCAACTCTGAATGCAGAGCCAATTGCATGTACTTCCCTCATAGTATTTATGATATGAAACGCAGAGAATCCGAACCACAACTCAGAAAAATCCCTAGGAGTCTGAATCAGCGTCTTTGGATTCAGCCTAGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

337

Amino Acids

38.9

Weight (kDa)

7.04

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 48 - 309 5.8e-40 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 575, 763
AccI GTMKAC 1 cut(s) 236
AclWI GGATC 4 cut(s) 39, 305, 867, 880
AcoI YGGCCR 1 cut(s) 788
AcuI CTGAAG 2 cut(s) 261, 380
AcvI CACGTG 1 cut(s) 116
AfaI GTAC 3 cut(s) 807, 850, 905
AgsI TTSAA 5 cut(s) 265, 274, 381, 599, 760
AhlI ACTAGT 2 cut(s) 71, 851
AjnI CCWGG 3 cut(s) 451, 643, 827
AluBI AGCT 4 cut(s) 136, 185, 748, 755
AluI AGCT 4 cut(s) 136, 185, 748, 755
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 3 cut(s) 291, 450, 862
AlwI GGATC 4 cut(s) 39, 305, 867, 880
AoxI GGCC 1 cut(s) 788
ApeKI GCWGC 3 cut(s) 23, 745, 843
AspA2I CCTAGG 1 cut(s) 968
AvrII CCTAGG 1 cut(s) 968
BaeI ACNNNNGTAYC 2 cut(s) 640, 673
BalI TGGCCA 1 cut(s) 790
BamHI GGATCC 1 cut(s) 872
BanI GGYRCC 2 cut(s) 575, 763
BauI CACGAG 1 cut(s) 689
BbrPI CACGTG 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 606
Bbv12I GWGCWC 1 cut(s) 128
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 3 cut(s) 10, 757, 855
BccI CCATC 3 cut(s) 213, 587, 770
BciT130I CCWGG 3 cut(s) 453, 645, 829
BciVI GTATCC 1 cut(s) 641
BcoDI GTCTC 3 cut(s) 291, 450, 862
BcuI ACTAGT 2 cut(s) 71, 851
BfaI CTAG 7 cut(s) 72, 77, 437, 852, 969, 1002, 1009
BfmI CTRYAG 2 cut(s) 699, 740
BfuI GTATCC 1 cut(s) 641
BisI GCNGC 3 cut(s) 24, 746, 844
BlnI CCTAGG 1 cut(s) 968
BlsI GCNGC 3 cut(s) 25, 747, 845
BmcAI AGTACT 1 cut(s) 850
Bme1390I CCNGG 3 cut(s) 453, 645, 829
BmiI GGNNCC 4 cut(s) 577, 633, 765, 874
BmrFI CCNGG 3 cut(s) 453, 645, 829
BmrI ACTGGG 2 cut(s) 495, 517
BmsI GCATC 1 cut(s) 630
BmuI ACTGGG 2 cut(s) 495, 517
BpiI GAAGAC 1 cut(s) 606
Bpu10I CCTNAGC 2 cut(s) 348, 606
BsaAI YACGTR 3 cut(s) 116, 559, 809
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 968
Bse1I ACTGG 3 cut(s) 490, 512, 788
Bse3DI GCAATG 2 cut(s) 470, 767
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 3 cut(s) 453, 645, 829
BseDI CCNNGG 1 cut(s) 968
BseGI GGATG 3 cut(s) 13, 224, 496
BseJI GATNNNNATC 1 cut(s) 309
BseMI GCAATG 2 cut(s) 470, 767
BseMII CTCAG 5 cut(s) 302, 339, 620, 634, 970
BseNI ACTGG 3 cut(s) 490, 512, 788
BseXI GCAGC 3 cut(s) 10, 757, 855
BshFI GGCC 1 cut(s) 790
BshNI GGYRCC 2 cut(s) 575, 763
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 2 cut(s) 524, 561
BsmAI GTCTC 3 cut(s) 291, 450, 862
BsmFI GGGAC 2 cut(s) 524, 561
BsmI GAATGC 1 cut(s) 890
BsnI GGCC 1 cut(s) 790
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 44, 310, 872
BspANI GGCC 1 cut(s) 790
BspCNI CTCAG 5 cut(s) 301, 340, 619, 633, 969
BspLI GGNNCC 4 cut(s) 577, 633, 765, 874
BspMAI CTGCAG 1 cut(s) 703
BspPI GGATC 4 cut(s) 39, 305, 867, 880
BspT107I GGYRCC 2 cut(s) 575, 763
BsrDI GCAATG 2 cut(s) 470, 767
BsrI ACTGG 3 cut(s) 490, 512, 788
BssECI CCNNGG 1 cut(s) 968
BssMI GATC 3 cut(s) 44, 310, 872
BssSI CACGAG 1 cut(s) 689
BssT1I CCWWGG 1 cut(s) 968
Bst2BI CACGAG 1 cut(s) 689
Bst2UI CCWGG 3 cut(s) 453, 645, 829
BstBAI YACGTR 3 cut(s) 116, 559, 809
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 5 cut(s) 288, 348, 606, 620, 956
BstF5I GGATG 3 cut(s) 13, 224, 496
BstKTI GATC 3 cut(s) 47, 313, 875
BstMAI GTCTC 3 cut(s) 291, 450, 862
BstMBI GATC 3 cut(s) 44, 310, 872
BstNI CCWGG 3 cut(s) 453, 645, 829
BstNSI RCATGY 1 cut(s) 904
BstSCI CCNGG 3 cut(s) 451, 643, 827
BstSFI CTRYAG 2 cut(s) 699, 740
BstSNI TACGTA 1 cut(s) 809
BstV1I GCAGC 3 cut(s) 10, 757, 855
BstV2I GAAGAC 1 cut(s) 606
BstX2I RGATCY 2 cut(s) 44, 872
BstYI RGATCY 2 cut(s) 44, 872
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 1 cut(s) 790
BtsCI GGATG 3 cut(s) 13, 224, 496
Cac8I GCNNGC 1 cut(s) 105
CseI GACGC 1 cut(s) 974
CsiI ACCWGGT 1 cut(s) 827
Csp6I GTAC 3 cut(s) 806, 849, 904
CviAII CATG 5 cut(s) 39, 342, 412, 662, 901
CviJI RGCY 8 cut(s) 136, 185, 340, 748, 755, 790, 893, 1000
CviKI_1 RGCY 8 cut(s) 136, 185, 340, 748, 755, 790, 893, 1000
CviQI GTAC 3 cut(s) 806, 849, 904
DdeI CTNAG 5 cut(s) 288, 348, 606, 620, 956
DpnI GATC 3 cut(s) 46, 312, 874
DpnII GATC 3 cut(s) 44, 310, 872
EaeI YGGCCR 1 cut(s) 788
Eco105I TACGTA 1 cut(s) 809
Eco130I CCWWGG 1 cut(s) 968
Eco57I CTGAAG 2 cut(s) 261, 380
Eco72I CACGTG 1 cut(s) 116
EcoRII CCWGG 3 cut(s) 451, 643, 827
EcoT14I CCWWGG 1 cut(s) 968
ErhI CCWWGG 1 cut(s) 968
FaeI CATG 5 cut(s) 42, 345, 415, 665, 904
FaqI GGGAC 2 cut(s) 524, 561
FatI CATG 5 cut(s) 38, 341, 411, 661, 900
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 3 cut(s) 24, 746, 844
FokI GGATG 3 cut(s) 20, 231, 503
Fsp4HI GCNGC 3 cut(s) 24, 746, 844
FspBI CTAG 7 cut(s) 72, 77, 437, 852, 969, 1002, 1009
GluI GCNGC 3 cut(s) 24, 746, 844
HaeIII GGCC 1 cut(s) 790
HapII CCGG 1 cut(s) 179
HgaI GACGC 1 cut(s) 974
Hin1II CATG 5 cut(s) 42, 345, 415, 665, 904
HinfI GANTC 6 cut(s) 284, 695, 941, 973, 979, 994
HpaII CCGG 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 237, 425
Hpy8I GTNNAC 2 cut(s) 237, 425
Hpy99I CGWCG 2 cut(s) 53, 660
HpyAV CCTTC 1 cut(s) 396
HpyCH4IV ACGT 4 cut(s) 115, 558, 724, 808
HpyCH4V TGCA 5 cut(s) 107, 447, 701, 888, 900
HpyF3I CTNAG 5 cut(s) 288, 348, 606, 620, 956
HpySE526I ACGT 4 cut(s) 115, 558, 724, 808
Hsp92II CATG 5 cut(s) 42, 345, 415, 665, 904
Kzo9I GATC 3 cut(s) 44, 310, 872
Lsp1109I GCAGC 3 cut(s) 10, 757, 855
LweI GCATC 1 cut(s) 630
MabI ACCWGGT 1 cut(s) 827
MaeI CTAG 7 cut(s) 72, 77, 437, 852, 969, 1002, 1009
MaeII ACGT 4 cut(s) 115, 558, 724, 808
MaeIII GTNAC 1 cut(s) 590
MalI GATC 3 cut(s) 46, 312, 874
MboI GATC 3 cut(s) 44, 310, 872
MboII GAAGA 6 cut(s) 74, 198, 254, 369, 373, 611
MfeI CAATTG 1 cut(s) 895
MflI RGATCY 2 cut(s) 44, 872
MhlI GDGCHC 1 cut(s) 128
MlsI TGGCCA 1 cut(s) 790
MluCI AATT 3 cut(s) 551, 811, 895
MluNI TGGCCA 1 cut(s) 790
MlyI GAGTC 2 cut(s) 293, 982
MmeI TCCRAC 1 cut(s) 900
MnlI CCTC 8 cut(s) 105, 325, 462, 615, 697, 698, 796, 921
Mox20I TGGCCA 1 cut(s) 790
MscI TGGCCA 1 cut(s) 790
MslI CAYNNNNRTG 2 cut(s) 410, 666
Msp20I TGGCCA 1 cut(s) 790
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 3 cut(s) 453, 645, 829
MunI CAATTG 1 cut(s) 895
Mva1269I GAATGC 1 cut(s) 890
MvaI CCWGG 3 cut(s) 453, 645, 829
NdeII GATC 3 cut(s) 44, 310, 872
NlaIII CATG 5 cut(s) 42, 345, 415, 665, 904
NlaIV GGNNCC 4 cut(s) 577, 633, 765, 874
NmuCI GTSAC 1 cut(s) 590
NspI RCATGY 1 cut(s) 904
PctI GAATGC 1 cut(s) 890
PfeI GAWTC 4 cut(s) 695, 941, 979, 994
PkrI GCNGC 3 cut(s) 25, 747, 845
PleI GAGTC 2 cut(s) 292, 981
PmaCI CACGTG 1 cut(s) 116
PmlI CACGTG 1 cut(s) 116
PpsI GAGTC 2 cut(s) 292, 981
Ppu21I YACGTR 3 cut(s) 116, 559, 809
Psp6I CCWGG 3 cut(s) 451, 643, 827
PspCI CACGTG 1 cut(s) 116
PspGI CCWGG 3 cut(s) 451, 643, 827
PspN4I GGNNCC 4 cut(s) 577, 633, 765, 874
PstI CTGCAG 1 cut(s) 703
PsuI RGATCY 2 cut(s) 44, 872
RsaI GTAC 3 cut(s) 807, 850, 905
RsaNI GTAC 3 cut(s) 806, 849, 904
RseI CAYNNNNRTG 2 cut(s) 410, 666
SatI GCNGC 3 cut(s) 24, 746, 844
Sau3AI GATC 3 cut(s) 44, 310, 872
ScaI AGTACT 1 cut(s) 850
SchI GAGTC 2 cut(s) 293, 982
ScrFI CCNGG 3 cut(s) 453, 645, 829
SduI GDGCHC 1 cut(s) 128
SexAI ACCWGGT 1 cut(s) 827
SfaNI GCATC 1 cut(s) 630
SfcI CTRYAG 2 cut(s) 699, 740
SmiMI CAYNNNNRTG 2 cut(s) 410, 666
SnaBI TACGTA 1 cut(s) 809
SpeI ACTAGT 2 cut(s) 71, 851
Sse9I AATT 3 cut(s) 551, 811, 895
SspMI CTAG 7 cut(s) 72, 77, 437, 852, 969, 1002, 1009
StyD4I CCNGG 3 cut(s) 451, 643, 827
StyI CCWWGG 1 cut(s) 968
TaiI ACGT 4 cut(s) 118, 561, 727, 811
TasI AATT 3 cut(s) 551, 811, 895
TatI WGTACW 2 cut(s) 848, 903
TfiI GAWTC 4 cut(s) 695, 941, 979, 994
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 3 cut(s) 23, 745, 843
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 6 cut(s) 198, 263, 463, 510, 823, 944
TspGWI ACGGA 1 cut(s) 37
XceI RCATGY 1 cut(s) 904
XmaJI CCTAGG 1 cut(s) 968
XmiI GTMKAC 1 cut(s) 236
XspI CTAG 7 cut(s) 72, 77, 437, 852, 969, 1002, 1009
ZrmI AGTACT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.