RLG00000012278

F-box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
17076667 .. 17077971
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012278

Sequence Viewer

Length: 1305 bp
ATGCCTGGTCAGAAAAGAAAAGGATCGTTAAGCCCCCGACCAGTTGACCCAAAGAAAAGAAAATCATTGATGCCTTCTGAGTGGTCGGATCTTCCTCAAGATCTTGTCGCCTCTATTGCCAAAAGAATAGTCTCCTTGGAGGATTTTAGTGTTTTTGGTGCAGTCTGCAAATCATGTACATCAGCGGCGACGAAAGAAAATTTTACTGGTGAATTAACACATCAAGTTCCTCTCGTGCTTACATGTCTTTGTCCAAGGGAGAAGCAGTCCCATGATCTCAAACTAAACGAGGATGGTGAAATTGTCATTCTTCCGAGGAAGAACGATGCCAACGTTGAGAAGCAGGATGAGAGTGACGCCGTGATAGAGTTATACAGCCTGACAAAAGATAGGATATACAGACGGAATTGGCCTCCGCCAGAACTAACCAAGAGCAAGGTATGCAATTCTTCTCTGGGATGGCTGCTGACTGTATCTGAGGGTTTGATATTTGACCTGTTGATTAATCCATTCAATAATGCCAAAATTGAGCTTCCATATGGACTACGCTATAACCTGGGAAAGCGATTGCAGTTTGTTTTATCATCAAGTCCTTCTTCGACATTGGATTATACAGTCATGATAAGTAATAATTCTCGTCATTTGCTATTTTGTAGACCCGGACTAGGTCAAAGTTGGAAATTATTGGATCTACCCGAACGCAGACAGATTTTCGATCTAAATTATTATAAGGGAAGATATTATTTTATTGACCATTTAGGGCGTGTTTCAGCTGTTTATGATATTGATAAGAACCTATATACAGTGAGGCGTGTTGCTCCCGAAATTCCAAGTGAGCTGCTGGGTCCTATGATGCGTGTTAAAATGTCATATTTGGTAGAATCCGCGGGGGATTTGCTGGTGGTTCTGTGTTTAGCTTATAAAAAGGATGTATCAATAGTTGGTTTTAGGGTTTTTAAGGTCCCATTTAGTAAAGGCAATTCATGGTCAGACTCAGAGATAAAGAACTTGGGGAATAGAACTGTCTTTTTGTGTCAAACGAGTTCTTGCTTCACCATTGAGGCCTCAGACTCTTCTAGATGTAAGGCCAATTGCATATACTTTATGGACTATAACAGACATGCAGGCATTTATAATATGGAGGATGGAATGATAGACCGTGACTTAGAAAAATCTTTTCAAAACTTTGGAAAATCGTTTGATGACAAAAAAAGTTCACATTTATGGATTCAACCGAGTTTTAATGATTCACAATGTGCCAGCCTACTTCCGATCTCTACCATCAAGAATGGTCACTGTCCTTGA

Protein Analysis

435

Amino Acids

49.28

Weight (kDa)

8.73

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 124 - 379 3.6e-45 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 729, 921, 1134
AccI GTMKAC 1 cut(s) 655
AccII CGCG 1 cut(s) 887
AciI CCGC 4 cut(s) 185, 416, 885, 887
AclI AACGTT 1 cut(s) 333
AclWI GGATC 3 cut(s) 31, 96, 696
AcsI RAATTY 2 cut(s) 199, 825
AcyI GRCGYC 1 cut(s) 357
AdeI CACNNNGTG 1 cut(s) 1256
AfaI GTAC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 665
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 3 cut(s) 514, 1181, 1232
AjnI CCWGG 2 cut(s) 4, 555
AluBI AGCT 4 cut(s) 532, 773, 838, 917
AluI AGCT 4 cut(s) 532, 773, 838, 917
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 3 cut(s) 31, 96, 696
AoxI GGCC 3 cut(s) 410, 1062, 1086
ApeKI GCWGC 2 cut(s) 463, 838
ApoI RAATTY 2 cut(s) 199, 825
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AseI ATTAAT 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 845, 961
AsuC2I CCSGG 1 cut(s) 660
AsuHPI GGTGA 3 cut(s) 221, 308, 1045
AvaII GGWCC 2 cut(s) 845, 961
BauI CACGAG 1 cut(s) 233
BbvI GCAGC 2 cut(s) 450, 825
BccI CCATC 4 cut(s) 287, 453, 1139, 1289
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 2 cut(s) 6, 557
BcnI CCSGG 1 cut(s) 660
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 2 cut(s) 665, 1077
BglII AGATCT 1 cut(s) 100
BisI GCNGC 3 cut(s) 186, 464, 839
BlsI GCNGC 3 cut(s) 187, 465, 840
Bme1390I CCNGG 3 cut(s) 6, 557, 660
Bme18I GGWCC 2 cut(s) 845, 961
BmgT120I GGNCC 2 cut(s) 845, 961
BmiI GGNNCC 2 cut(s) 846, 963
BmrFI CCNGG 3 cut(s) 6, 557, 660
BmsI GCATC 3 cut(s) 60, 316, 843
BpuEI CTTGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 5 cut(s) 135, 254, 314, 556, 885
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 665
Bse1I ACTGG 2 cut(s) 41, 211
BseBI CCWGG 2 cut(s) 6, 557
BseDI CCNNGG 5 cut(s) 135, 254, 314, 556, 885
BseGI GGATG 5 cut(s) 298, 352, 464, 934, 1150
BseLI CCNNNNNNNGG 1 cut(s) 665
BseMII CTCAG 4 cut(s) 69, 468, 1008, 1080
BseNI ACTGG 2 cut(s) 41, 211
BseXI GCAGC 2 cut(s) 450, 825
BseYI CCCAGC 1 cut(s) 841
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 887
BshFI GGCC 3 cut(s) 412, 1064, 1088
BsiSI CCGG 1 cut(s) 660
BslFI GGGAC 2 cut(s) 253, 947
BslI CCNNNNNNNGG 1 cut(s) 665
BsmAI GTCTC 1 cut(s) 136
BsmFI GGGAC 2 cut(s) 253, 947
BsnI GGCC 3 cut(s) 412, 1064, 1088
Bsp1407I TGTACA 1 cut(s) 176
Bsp143I GATC 7 cut(s) 23, 88, 100, 274, 688, 715, 1272
BspACI CCGC 4 cut(s) 185, 416, 885, 887
BspANI GGCC 3 cut(s) 412, 1064, 1088
BspCNI CTCAG 4 cut(s) 70, 469, 1007, 1079
BspFNI CGCG 1 cut(s) 887
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 846, 963
BspPI GGATC 3 cut(s) 31, 96, 696
BsrGI TGTACA 1 cut(s) 176
BsrI ACTGG 2 cut(s) 41, 211
BssECI CCNNGG 5 cut(s) 135, 254, 314, 556, 885
BssMI GATC 7 cut(s) 23, 88, 100, 274, 688, 715, 1272
BssNI GRCGYC 1 cut(s) 357
BssSI CACGAG 1 cut(s) 233
BssT1I CCWWGG 2 cut(s) 135, 254
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 2 cut(s) 6, 557
Bst4CI ACNGT 6 cut(s) 472, 616, 805, 1024, 1160, 1298
Bst6I CTCTTC 1 cut(s) 1078
BstACI GRCGYC 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 441
BstAUI TGTACA 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 1126, 1261
BstDEI CTNAG 5 cut(s) 78, 477, 994, 1066, 1165
BstDSI CCRYGG 1 cut(s) 885
BstF5I GGATG 5 cut(s) 298, 352, 464, 934, 1150
BstFNI CGCG 1 cut(s) 887
BstKTI GATC 7 cut(s) 26, 91, 103, 277, 691, 718, 1275
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 7 cut(s) 23, 88, 100, 274, 688, 715, 1272
BstMWI GCNNNNNNNGC 2 cut(s) 116, 441
BstNI CCWGG 2 cut(s) 6, 557
BstNSI RCATGY 2 cut(s) 246, 1124
BstSCI CCNGG 3 cut(s) 4, 555, 658
BstUI CGCG 1 cut(s) 887
BstV1I GCAGC 2 cut(s) 450, 825
BstX2I RGATCY 3 cut(s) 88, 100, 688
BstYI RGATCY 3 cut(s) 88, 100, 688
BsuRI GGCC 3 cut(s) 412, 1064, 1088
BtgI CCRYGG 1 cut(s) 885
BtsCI GGATG 5 cut(s) 298, 352, 464, 934, 1150
BtsIMutI CAGTG 2 cut(s) 810, 1294
Cac8I GCNNGC 2 cut(s) 1126, 1261
CciI TCATGA 1 cut(s) 618
Cfr13I GGNCC 2 cut(s) 845, 961
Cfr42I CCGCGG 1 cut(s) 888
CseI GACGC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 177
CviAII CATG 6 cut(s) 174, 243, 272, 619, 984, 1121
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 5 cut(s) 78, 477, 994, 1066, 1165
DpnI GATC 7 cut(s) 25, 90, 102, 276, 690, 717, 1274
DpnII GATC 7 cut(s) 23, 88, 100, 274, 688, 715, 1272
DraIII CACNNNGTG 1 cut(s) 1256
Eam1104I CTCTTC 1 cut(s) 1078
EarI CTCTTC 1 cut(s) 1078
EciI GGCGGA 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 135, 254
Eco147I AGGCCT 1 cut(s) 1064
Eco47I GGWCC 2 cut(s) 845, 961
EcoO109I RGGNCCY 2 cut(s) 845, 961
EcoRII CCWGG 2 cut(s) 4, 555
EcoT14I CCWWGG 2 cut(s) 135, 254
ErhI CCWWGG 2 cut(s) 135, 254
FaeI CATG 6 cut(s) 177, 246, 275, 622, 987, 1124
FalI AAGNNNNNCTT 2 cut(s) 580, 612
FaqI GGGAC 2 cut(s) 253, 947
FatI CATG 6 cut(s) 173, 242, 271, 618, 983, 1120
FauI CCCGC 1 cut(s) 880
FauNDI CATATG 1 cut(s) 538
FblI GTMKAC 1 cut(s) 655
Fnu4HI GCNGC 3 cut(s) 186, 464, 839
FokI GGATG 5 cut(s) 305, 359, 471, 941, 1157
Fsp4HI GCNGC 3 cut(s) 186, 464, 839
FspBI CTAG 2 cut(s) 665, 1077
GluI GCNGC 3 cut(s) 186, 464, 839
GsaI CCCAGC 1 cut(s) 845
HaeIII GGCC 3 cut(s) 412, 1064, 1088
HapII CCGG 1 cut(s) 660
HgaI GACGC 1 cut(s) 365
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 6 cut(s) 177, 246, 275, 622, 987, 1124
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 5 cut(s) 881, 992, 1070, 1228, 1247
HpaII CCGG 1 cut(s) 660
HphI GGTGA 3 cut(s) 221, 308, 1045
Hpy166II GTNNAC 3 cut(s) 46, 656, 1217
Hpy188I TCNGA 9 cut(s) 12, 79, 88, 315, 478, 991, 997, 1069, 1272
Hpy188III TCNNGA 5 cut(s) 98, 619, 821, 1077, 1285
Hpy8I GTNNAC 3 cut(s) 46, 656, 1217
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 84, 603
HpyCH4III ACNGT 6 cut(s) 472, 616, 805, 1024, 1160, 1298
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 6 cut(s) 161, 168, 444, 571, 1095, 1124
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 441
HpyF3I CTNAG 5 cut(s) 78, 477, 994, 1066, 1165
HpySE526I ACGT 1 cut(s) 333
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 6 cut(s) 177, 246, 275, 622, 987, 1124
KspI CCGCGG 1 cut(s) 888
Kzo9I GATC 7 cut(s) 23, 88, 100, 274, 688, 715, 1272
LmnI GCTCC 1 cut(s) 823
Lsp1109I GCAGC 2 cut(s) 450, 825
LweI GCATC 3 cut(s) 60, 316, 843
MaeI CTAG 2 cut(s) 665, 1077
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 3 cut(s) 353, 1160, 1292
MalI GATC 7 cut(s) 25, 90, 102, 276, 690, 717, 1274
MboI GATC 7 cut(s) 23, 88, 100, 274, 688, 715, 1272
MboII GAAGA 7 cut(s) 83, 302, 331, 441, 588, 747, 1065
MfeI CAATTG 1 cut(s) 1090
MflI RGATCY 3 cut(s) 88, 100, 688
MlyI GAGTC 2 cut(s) 986, 1064
MmeI TCCRAC 2 cut(s) 66, 656
MseI TTAA 6 cut(s) 29, 215, 504, 861, 957, 1242
MslI CAYNNNNRTG 1 cut(s) 1222
MspA1I CMGCKG 3 cut(s) 185, 773, 887
MspI CCGG 1 cut(s) 660
MspR9I CCNGG 3 cut(s) 6, 557, 660
MunI CAATTG 1 cut(s) 1090
MvaI CCWGG 2 cut(s) 6, 557
MvnI CGCG 1 cut(s) 887
MwoI GCNNNNNNNGC 2 cut(s) 116, 441
NciI CCSGG 1 cut(s) 660
NdeI CATATG 1 cut(s) 538
NdeII GATC 7 cut(s) 23, 88, 100, 274, 688, 715, 1272
NlaIII CATG 6 cut(s) 177, 246, 275, 622, 987, 1124
NlaIV GGNNCC 2 cut(s) 846, 963
NmuCI GTSAC 3 cut(s) 353, 1160, 1292
NspI RCATGY 2 cut(s) 246, 1124
PagI TCATGA 1 cut(s) 618
PceI AGGCCT 1 cut(s) 1064
PciI ACATGT 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PfeI GAWTC 3 cut(s) 881, 1228, 1247
PflFI GACNNNGTC 1 cut(s) 666
PkrI GCNGC 3 cut(s) 187, 465, 840
PleI GAGTC 2 cut(s) 986, 1064
PpsI GAGTC 2 cut(s) 986, 1064
PpuMI RGGWCCY 2 cut(s) 845, 961
PscI ACATGT 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 504
PsiI TTATAA 3 cut(s) 729, 921, 1134
Psp1406I AACGTT 1 cut(s) 333
Psp5II RGGWCCY 2 cut(s) 845, 961
Psp6I CCWGG 2 cut(s) 4, 555
PspFI CCCAGC 1 cut(s) 841
PspGI CCWGG 2 cut(s) 4, 555
PspN4I GGNNCC 2 cut(s) 846, 963
PspPI GGNCC 2 cut(s) 845, 961
PspPPI RGGWCCY 2 cut(s) 845, 961
PsuI RGATCY 3 cut(s) 88, 100, 688
PsyI GACNNNGTC 1 cut(s) 666
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 1222
SacII CCGCGG 1 cut(s) 888
SaqAI TTAA 6 cut(s) 29, 215, 504, 861, 957, 1242
SatI GCNGC 3 cut(s) 186, 464, 839
Sau3AI GATC 7 cut(s) 23, 88, 100, 274, 688, 715, 1272
Sau96I GGNCC 2 cut(s) 845, 961
SchI GAGTC 2 cut(s) 986, 1064
ScrFI CCNGG 3 cut(s) 6, 557, 660
SfaNI GCATC 3 cut(s) 60, 316, 843
Sfr303I CCGCGG 1 cut(s) 888
SgrBI CCGCGG 1 cut(s) 888
SinI GGWCC 2 cut(s) 845, 961
SmiMI CAYNNNNRTG 1 cut(s) 1222
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
SseBI AGGCCT 1 cut(s) 1064
SsiI CCGC 4 cut(s) 185, 416, 885, 887
SspMI CTAG 2 cut(s) 665, 1077
StuI AGGCCT 1 cut(s) 1064
StyD4I CCNGG 3 cut(s) 4, 555, 658
StyI CCWWGG 2 cut(s) 135, 254
TaaI ACNGT 6 cut(s) 472, 616, 805, 1024, 1160, 1298
TaiI ACGT 1 cut(s) 336
TaqI TCGA 2 cut(s) 599, 714
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 3 cut(s) 881, 1228, 1247
Tru1I TTAA 6 cut(s) 29, 215, 504, 861, 957, 1242
Tru9I TTAA 6 cut(s) 29, 215, 504, 861, 957, 1242
TscAI CASTG 2 cut(s) 810, 1301
TseFI GTSAC 3 cut(s) 353, 1160, 1292
TseI GCWGC 2 cut(s) 463, 838
Tsp45I GTSAC 3 cut(s) 353, 1160, 1292
TspDTI ATGAA 1 cut(s) 972
TspGWI ACGGA 1 cut(s) 418
TspRI CASTG 2 cut(s) 810, 1301
Tth111I GACNNNGTC 1 cut(s) 666
VpaK11BI GGWCC 2 cut(s) 845, 961
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 2 cut(s) 199, 825
XbaI TCTAGA 1 cut(s) 1076
XceI RCATGY 2 cut(s) 246, 1124
XmiI GTMKAC 1 cut(s) 655
XspI CTAG 2 cut(s) 665, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.