Rroxscaffold_3G00258060

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000399
Physical Location & Seq
Reverse (-)
52408302 .. 52409416
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258060.1

Sequence Viewer

Length: 870 bp
ATGGCTGACTGGTCTGATCTTCCCCAGGATCTTGTTGTGTGTATCTGCCAAAGGATGGATTCCAAGCAAGACTCCATCACTTTCGGCGCAGTCTGTAAAACATGGAGTTCTGCCGCCACCAAAGATAACTTTACTCGTAGGTTTACACATCAAGTTCCACTGCTTATGATGCCAGATACAGAGGACAATAATAGTCCTTTTCCCGGCCAGTGTTACAACCTCATAAAAGATTACATAGTCATGGTTTCTACTGGGTCCGATAAAAAGTTCGCTTTCTGGAGACCGAAGGACAATGAATGGACTACAATATCATCAGAACTAAATAATTGGGAATCAGAGACACGATCATATGATATAGCTTATTACAAAGGACAATTTTATATAGTCGAATGGGATGGCCGTGTGTTGGTTTGTGACATTGATGACCCGAAGAAAGCAGCAGCAAAGTTGGTTGTTTCAGAGATGCCAATTAATCTAGTTTCTAATGATAGCGTACAGCAATTGTACCTGGTGGAATCAGGTGGCGCCTTACTATTGGTTTTCCGGCTTAAGTGCACTTCTCGAAATGGGTTTAGGGTTTTTGAGGTGCCGCTTAGTACTGGCAATTGGTTGGACGTGAAGGAGGTAAAGAACTTGGGGAATCGAGCCTTGTTTTTGAGTTCAAACAATTCTTCAGCCTCTATAGAGGTCTCAGACTACTCTGGGTGTAAGGCCAATTGCATATACTTTGCACGTCATCTTGTTTCTGAATGCACTCCGACTCGTAGATATCTGGGTATTTTTGGTATGGAAGATGGAAAAGTTGAACCATTCACACCGAAATCCTGTCGCGTTCAAAAACCATATGTATGGACTCAGTGGACTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

289

Amino Acids

32.98

Weight (kDa)

5.83

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 46 1.7e-06 F-box domain
Beta-prop_KIB1-4 PF03478 76 - 244 1.4e-38 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 524, 586
AccB7I CCANNNNNTGG 1 cut(s) 55
AccII CGCG 1 cut(s) 831
AciI CCGC 2 cut(s) 114, 590
AclWI GGATC 1 cut(s) 36
AcoI YGGCCR 2 cut(s) 205, 397
AcuI CTGAAG 1 cut(s) 657
AcyI GRCGYC 1 cut(s) 525
AfaI GTAC 3 cut(s) 495, 506, 598
AfiI CCNNNNNNNGG 3 cut(s) 55, 203, 406
AflII CTTAAG 1 cut(s) 548
AgsI TTSAA 3 cut(s) 663, 806, 836
AjiI CACGTC 2 cut(s) 616, 734
AjnI CCWGG 2 cut(s) 24, 507
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw21I GWGCWC 1 cut(s) 557
Alw26I GTCTC 3 cut(s) 274, 332, 694
Alw44I GTGCAC 1 cut(s) 553
AlwI GGATC 1 cut(s) 36
AoxI GGCC 3 cut(s) 205, 397, 711
ApaLI GTGCAC 1 cut(s) 553
ApeKI GCWGC 2 cut(s) 437, 440
AseI ATTAAT 1 cut(s) 471
AspLEI GCGC 2 cut(s) 89, 527
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 1 cut(s) 204
AvaII GGWCC 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 557
BanI GGYRCC 2 cut(s) 524, 586
Bbv12I GWGCWC 1 cut(s) 557
BbvI GCAGC 2 cut(s) 449, 452
BccI CCATC 4 cut(s) 49, 83, 389, 788
BceAI ACGGC 1 cut(s) 384
BciT130I CCWGG 2 cut(s) 26, 509
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 3 cut(s) 274, 332, 694
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 1 cut(s) 681
BfoI RGCGCY 1 cut(s) 528
BfrI CTTAAG 1 cut(s) 548
BisI GCNGC 4 cut(s) 114, 438, 441, 590
BlsI GCNGC 4 cut(s) 115, 439, 442, 591
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 3 cut(s) 26, 204, 509
Bme18I GGWCC 1 cut(s) 255
BmgBI CACGTC 2 cut(s) 616, 734
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 3 cut(s) 256, 526, 588
BmrFI CCNGG 3 cut(s) 26, 204, 509
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 159, 453
BmuI ACTGGG 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 525
BsaI GGTCTC 2 cut(s) 274, 694
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 203, 406
Bse1I ACTGG 4 cut(s) 14, 208, 256, 604
BseBI CCWGG 2 cut(s) 26, 509
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 60, 400
BseLI CCNNNNNNNGG 3 cut(s) 55, 203, 406
BseMII CTCAG 2 cut(s) 705, 869
BseNI ACTGG 4 cut(s) 14, 208, 256, 604
BseSI GKGCMC 1 cut(s) 557
BseXI GCAGC 2 cut(s) 449, 452
Bsh1236I CGCG 1 cut(s) 831
BshFI GGCC 3 cut(s) 207, 399, 713
BshNI GGYRCC 2 cut(s) 524, 586
BsiHKAI GWGCWC 1 cut(s) 557
BsiSI CCGG 2 cut(s) 204, 544
BslI CCNNNNNNNGG 3 cut(s) 55, 203, 406
BsmAI GTCTC 3 cut(s) 274, 332, 694
BsmI GAATGC 1 cut(s) 755
BsnI GGCC 3 cut(s) 207, 399, 713
Bso31I GGTCTC 2 cut(s) 274, 694
Bsp1286I GDGCHC 1 cut(s) 557
Bsp143I GATC 3 cut(s) 16, 28, 344
BspACI CCGC 2 cut(s) 114, 590
BspANI GGCC 3 cut(s) 207, 399, 713
BspCNI CTCAG 2 cut(s) 704, 868
BspFNI CGCG 1 cut(s) 831
BspLI GGNNCC 3 cut(s) 256, 526, 588
BspPI GGATC 1 cut(s) 36
BspT107I GGYRCC 2 cut(s) 524, 586
BspTI CTTAAG 1 cut(s) 548
BspTNI GGTCTC 2 cut(s) 274, 694
BsrI ACTGG 4 cut(s) 14, 208, 256, 604
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 3 cut(s) 16, 28, 344
BssNI GRCGYC 1 cut(s) 525
Bst2UI CCWGG 2 cut(s) 26, 509
BstACI GRCGYC 1 cut(s) 525
BstAFI CTTAAG 1 cut(s) 548
BstDEI CTNAG 3 cut(s) 593, 691, 855
BstF5I GGATG 2 cut(s) 60, 400
BstFNI CGCG 1 cut(s) 831
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 2 cut(s) 89, 527
BstKTI GATC 3 cut(s) 19, 31, 347
BstMAI GTCTC 3 cut(s) 274, 332, 694
BstMBI GATC 3 cut(s) 16, 28, 344
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNI CCWGG 2 cut(s) 26, 509
BstSCI CCNGG 3 cut(s) 24, 202, 507
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 557
BstUI CGCG 1 cut(s) 831
BstV1I GCAGC 2 cut(s) 449, 452
BstX2I RGATCY 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 849
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 3 cut(s) 207, 399, 713
BtrI CACGTC 2 cut(s) 616, 734
BtsCI GGATG 2 cut(s) 60, 400
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 3 cut(s) 158, 215, 863
CfoI GCGC 2 cut(s) 89, 527
Cfr13I GGNCC 1 cut(s) 255
CsiI ACCWGGT 1 cut(s) 507
Csp6I GTAC 3 cut(s) 494, 505, 597
CviAII CATG 2 cut(s) 102, 241
CviJI RGCY 8 cut(s) 5, 207, 359, 399, 547, 647, 677, 713
CviKI_1 RGCY 8 cut(s) 5, 207, 359, 399, 547, 647, 677, 713
CviQI GTAC 3 cut(s) 494, 505, 597
DdeI CTNAG 3 cut(s) 593, 691, 855
DinI GGCGCC 1 cut(s) 526
DpnI GATC 3 cut(s) 18, 30, 346
DpnII GATC 3 cut(s) 16, 28, 344
EaeI YGGCCR 2 cut(s) 205, 397
Eco31I GGTCTC 2 cut(s) 274, 694
Eco32I GATATC 1 cut(s) 770
Eco47I GGWCC 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 657
EcoRII CCWGG 2 cut(s) 24, 507
EcoRV GATATC 1 cut(s) 770
EgeI GGCGCC 1 cut(s) 526
EheI GGCGCC 1 cut(s) 526
FaeI CATG 2 cut(s) 105, 244
FatI CATG 2 cut(s) 101, 240
FauNDI CATATG 2 cut(s) 349, 844
Fnu4HI GCNGC 4 cut(s) 114, 438, 441, 590
FokI GGATG 2 cut(s) 67, 407
Fsp4HI GCNGC 4 cut(s) 114, 438, 441, 590
FspBI CTAG 1 cut(s) 476
GlaI GCGC 2 cut(s) 88, 526
GluI GCNGC 4 cut(s) 114, 438, 441, 590
GsuI CTGGAG 1 cut(s) 298
HaeII RGCGCY 1 cut(s) 528
HaeIII GGCC 3 cut(s) 207, 399, 713
HapII CCGG 2 cut(s) 204, 544
HhaI GCGC 2 cut(s) 89, 527
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 2 cut(s) 105, 244
Hin6I GCGC 2 cut(s) 87, 525
HinP1I GCGC 2 cut(s) 87, 525
HinfI GANTC 7 cut(s) 59, 71, 332, 515, 640, 760, 853
HpaII CCGG 2 cut(s) 204, 544
Hpy166II GTNNAC 3 cut(s) 144, 555, 861
Hpy188I TCNGA 8 cut(s) 16, 259, 316, 337, 460, 694, 748, 759
Hpy188III TCNNGA 2 cut(s) 277, 561
Hpy8I GTNNAC 3 cut(s) 144, 555, 861
HpyAV CCTTC 2 cut(s) 280, 613
HpyCH4IV ACGT 2 cut(s) 615, 733
HpyCH4V TGCA 4 cut(s) 555, 720, 731, 753
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 3 cut(s) 593, 691, 855
HpySE526I ACGT 2 cut(s) 615, 733
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 2 cut(s) 105, 244
HspAI GCGC 2 cut(s) 87, 525
KasI GGCGCC 1 cut(s) 524
Kzo9I GATC 3 cut(s) 16, 28, 344
Lsp1109I GCAGC 2 cut(s) 449, 452
LweI GCATC 2 cut(s) 159, 453
MabI ACCWGGT 1 cut(s) 507
MaeI CTAG 1 cut(s) 476
MaeII ACGT 2 cut(s) 615, 733
MaeIII GTNAC 2 cut(s) 212, 413
MalI GATC 3 cut(s) 18, 30, 346
MboI GATC 3 cut(s) 16, 28, 344
MboII GAAGA 4 cut(s) 11, 442, 663, 803
MfeI CAATTG 3 cut(s) 500, 604, 715
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 557
MluCI AATT 7 cut(s) 325, 374, 468, 500, 604, 667, 715
Mly113I GGCGCC 1 cut(s) 525
MlyI GAGTC 3 cut(s) 65, 754, 847
MmeI TCCRAC 2 cut(s) 591, 782
MnlI CCTC 6 cut(s) 175, 230, 577, 616, 679, 688
MseI TTAA 2 cut(s) 471, 549
MslI CAYNNNNRTG 2 cut(s) 239, 847
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 2 cut(s) 204, 544
MspR9I CCNGG 3 cut(s) 26, 204, 509
MunI CAATTG 3 cut(s) 500, 604, 715
Mva1269I GAATGC 1 cut(s) 755
MvaI CCWGG 2 cut(s) 26, 509
MvnI CGCG 1 cut(s) 831
MwoI GCNNNNNNNGC 1 cut(s) 169
NarI GGCGCC 1 cut(s) 525
NciI CCSGG 1 cut(s) 204
NdeI CATATG 2 cut(s) 349, 844
NdeII GATC 3 cut(s) 16, 28, 344
NlaIII CATG 2 cut(s) 105, 244
NlaIV GGNNCC 3 cut(s) 256, 526, 588
NmuCI GTSAC 1 cut(s) 413
PctI GAATGC 1 cut(s) 755
PfeI GAWTC 4 cut(s) 59, 332, 515, 640
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 4 cut(s) 115, 439, 442, 591
PleI GAGTC 3 cut(s) 65, 754, 847
PluTI GGCGCC 1 cut(s) 528
PpsI GAGTC 3 cut(s) 65, 754, 847
PshBI ATTAAT 1 cut(s) 471
Psp6I CCWGG 2 cut(s) 24, 507
PspGI CCWGG 2 cut(s) 24, 507
PspN4I GGNNCC 3 cut(s) 256, 526, 588
PspPI GGNCC 1 cut(s) 255
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 3 cut(s) 495, 506, 598
RsaNI GTAC 3 cut(s) 494, 505, 597
RseI CAYNNNNRTG 2 cut(s) 239, 847
SaqAI TTAA 2 cut(s) 471, 549
SatI GCNGC 4 cut(s) 114, 438, 441, 590
Sau3AI GATC 3 cut(s) 16, 28, 344
Sau96I GGNCC 1 cut(s) 255
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 3 cut(s) 65, 754, 847
ScrFI CCNGG 3 cut(s) 26, 204, 509
SduI GDGCHC 1 cut(s) 557
SexAI ACCWGGT 1 cut(s) 507
SfaNI GCATC 2 cut(s) 159, 453
SfcI CTRYAG 1 cut(s) 681
SfoI GGCGCC 1 cut(s) 526
SinI GGWCC 1 cut(s) 255
SmiMI CAYNNNNRTG 2 cut(s) 239, 847
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 7 cut(s) 325, 374, 468, 500, 604, 667, 715
SsiI CCGC 2 cut(s) 114, 590
SspDI GGCGCC 1 cut(s) 524
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 3 cut(s) 24, 202, 507
TaiI ACGT 2 cut(s) 618, 736
TaqI TCGA 3 cut(s) 387, 562, 643
TaqII GACCGA 1 cut(s) 298
TasI AATT 7 cut(s) 325, 374, 468, 500, 604, 667, 715
TatI WGTACW 1 cut(s) 596
TauI GCSGC 2 cut(s) 116, 592
TfiI GAWTC 4 cut(s) 59, 332, 515, 640
Tru1I TTAA 2 cut(s) 471, 549
Tru9I TTAA 2 cut(s) 471, 549
TscAI CASTG 3 cut(s) 165, 215, 863
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 2 cut(s) 437, 440
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 1 cut(s) 309
TspRI CASTG 3 cut(s) 165, 215, 863
Van91I CCANNNNNTGG 1 cut(s) 55
Vha464I CTTAAG 1 cut(s) 548
VneI GTGCAC 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 255
VspI ATTAAT 1 cut(s) 471
XspI CTAG 1 cut(s) 476
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.