Rh7BG171300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000399
Physical Location & Seq
Forward (+)
13350490 .. 13351768
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG171300.1

Sequence Viewer

Length: 222 bp
ATGGCTGACTGGTCTGATCTTCCCCAGGATCTTGTTGTGTGTATCTGCCAAAGGATGGATTCCATGCAAGACTACATCACTTTCGGCGCAGTCTGTAAAACATGGAGTTCTGCCGCCACCAAAGATAACTTTACACATCAAGTTCCACTGCTTATGATGCCAGATACAGAGGACAATAATAGTTCTTTTCCCGGCCAGTGTTACAACCTCATACAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

73

Amino Acids

8.24

Weight (kDa)

4.05

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 46 2.1e-08 F-box domain
F-box-like PF12937 4 - 42 1.9e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 55
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 55
AjnI CCWGG 1 cut(s) 24
AlwI GGATC 1 cut(s) 36
AoxI GGCC 1 cut(s) 193
AspLEI GCGC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 192
BccI CCATC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 26
BcnI CCSGG 1 cut(s) 192
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 26, 192
BmrFI CCNGG 2 cut(s) 26, 192
BmsI GCATC 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 14, 196
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 14, 196
BshFI GGCC 1 cut(s) 195
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 55
BsnI GGCC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 16, 28
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 36
BsrI ACTGG 2 cut(s) 14, 196
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 16, 28
Bst2UI CCWGG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 2 cut(s) 19, 31
BstMBI GATC 2 cut(s) 16, 28
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 2 cut(s) 24, 190
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 146, 203
CfoI GCGC 1 cut(s) 89
CviAII CATG 3 cut(s) 64, 102, 219
CviJI RGCY 2 cut(s) 5, 195
CviKI_1 RGCY 2 cut(s) 5, 195
DpnI GATC 2 cut(s) 18, 30
DpnII GATC 2 cut(s) 16, 28
EaeI YGGCCR 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 3 cut(s) 67, 105, 222
FaiI YATR 5 cut(s) 65, 103, 155, 212, 220
FatI CATG 3 cut(s) 63, 101, 218
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 114
GlaI GCGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 195
HapII CCGG 1 cut(s) 192
HhaI GCGC 1 cut(s) 89
Hin1II CATG 3 cut(s) 67, 105, 222
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 1 cut(s) 59
HpaII CCGG 1 cut(s) 192
Hpy188I TCNGA 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
Hsp92II CATG 3 cut(s) 67, 105, 222
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 2 cut(s) 16, 28
LpnPI CCDG 5 cut(s) 11, 38, 174, 205, 209
LweI GCATC 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 18, 30
MboI GATC 2 cut(s) 16, 28
MboII GAAGA 1 cut(s) 11
MflI RGATCY 1 cut(s) 28
MnlI CCTC 2 cut(s) 163, 218
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 26, 192
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 157
NciI CCSGG 1 cut(s) 192
NdeII GATC 2 cut(s) 16, 28
NlaIII CATG 3 cut(s) 67, 105, 222
PfeI GAWTC 1 cut(s) 59
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PsuI RGATCY 1 cut(s) 28
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 2 cut(s) 16, 28
ScrFI CCNGG 2 cut(s) 26, 192
SetI ASST 1 cut(s) 210
SfaNI GCATC 1 cut(s) 147
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 24, 190
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 59
TscAI CASTG 2 cut(s) 153, 203
TspRI CASTG 2 cut(s) 153, 203
Van91I CCANNNNNTGG 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.