Rmu_sc0006802.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006802.1
OG0000399
Physical Location & Seq
Reverse (-)
146 .. 1094
949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006802.1_g000001.1.cds

Sequence Viewer

Length: 819 bp
atggctgtcgactggtctacggatattcctcgagatcttgttctctgtttcgccagtcggttgatggtttcattggaggattttattgctttcggtgcagtttgcaaatcatggagttcagcggcgatggaggtagaggaaaactaccttgctagtattagtactagtaccagtactagcactggattgagattattagcatatcaagttcctctcctaatgctaccggtaagacttacccttccacggggtgttgcaggcggcgacgtgactgttgaattttacagtctgactgcaaaagatgaacgaactagttcgctacaatatccccttgaagatataggcaagtttgtcttatcgtcgagtccttcttggacatcggattacgtagtcatgtttcatacttctactactttggcatactgcaaaccaggactaggtgaaaattggacggagctgcatgccatgaacattcaactcccagatgaacgaactagttcgctacaatatccccttgaagatataggcaagtttgtcttatcgtcgagtccttcttggacatcggattacgtagtcatgtttcatacttctactactttggcatactgcagaccaggactaggtgaaaattggacggagctatcattccaaacggacaatattaatattatcagtgatctgacttactatcggggacaattttatgtggtggactgttgtggccgtgttttagtcgtttgtgatattgacgaccctaatcgagcaaaactgaaggttgttgctccagagataaatcaaaaggaactattgttggaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

272

Amino Acids

30.36

Weight (kDa)

4.59

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 9, 17
AciI CCGC 2 cut(s) 122, 261
AcoI YGGCCR 1 cut(s) 721
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 791
AdeI CACNNNGTG 1 cut(s) 251
AfaI GTAC 3 cut(s) 163, 169, 175
AfiI CCNNNNNNNGG 4 cut(s) 246, 247, 437, 620
AgeI ACCGGT 1 cut(s) 226
AgsI TTSAA 4 cut(s) 278, 335, 476, 518
AhlI ACTAGT 3 cut(s) 164, 311, 494
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 2 cut(s) 430, 613
AluBI AGCT 2 cut(s) 457, 640
AluI AGCT 2 cut(s) 457, 640
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 1 cut(s) 721
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 1 cut(s) 278
AseI ATTAAT 1 cut(s) 663
AsiGI ACCGGT 1 cut(s) 226
Asp700I GAANNNNTTC 2 cut(s) 313, 496
AsuHPI GGTGA 2 cut(s) 452, 635
AvaI CYCGRG 1 cut(s) 30
BbvI GCAGC 1 cut(s) 444
BccI CCATC 2 cut(s) 58, 121
BceAI ACGGC 1 cut(s) 708
BciT130I CCWGG 2 cut(s) 432, 615
BcuI ACTAGT 3 cut(s) 164, 311, 494
BfaI CTAG 7 cut(s) 153, 165, 177, 312, 437, 495, 620
BfmI CTRYAG 1 cut(s) 607
BglII AGATCT 1 cut(s) 34
BisI GCNGC 3 cut(s) 123, 262, 458
BlsI GCNGC 3 cut(s) 124, 263, 459
BmcAI AGTACT 2 cut(s) 163, 175
Bme1390I CCNGG 2 cut(s) 432, 615
BmeT110I CYCGRG 1 cut(s) 30
BmgBI CACGTC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 432, 615
BpmI CTGGAG 1 cut(s) 768
BsaAI YACGTR 2 cut(s) 388, 571
BsaJI CCNNGG 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 4 cut(s) 246, 247, 437, 620
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 4 cut(s) 17, 54, 171, 187
BseBI CCWGG 2 cut(s) 432, 615
BseDI CCNNGG 1 cut(s) 245
BseLI CCNNNNNNNGG 4 cut(s) 246, 247, 437, 620
BseNI ACTGG 4 cut(s) 17, 54, 171, 187
BseXI GCAGC 1 cut(s) 444
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 1 cut(s) 723
BshTI ACCGGT 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 708
BslI CCNNNNNNNGG 4 cut(s) 246, 247, 437, 620
BsmFI GGGAC 1 cut(s) 708
BsnI GGCC 1 cut(s) 723
BsoBI CYCGRG 1 cut(s) 30
Bsp143I GATC 2 cut(s) 34, 676
BspACI CCGC 2 cut(s) 122, 261
BspANI GGCC 1 cut(s) 723
BspMAI CTGCAG 1 cut(s) 611
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 4 cut(s) 17, 54, 171, 187
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 2 cut(s) 34, 676
Bst2UI CCWGG 2 cut(s) 432, 615
Bst4CI ACNGT 3 cut(s) 274, 287, 716
BstBAI YACGTR 2 cut(s) 388, 571
BstC8I GCNNGC 2 cut(s) 259, 462
BstDSI CCRYGG 1 cut(s) 245
BstKTI GATC 2 cut(s) 37, 679
BstMBI GATC 2 cut(s) 34, 676
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 2 cut(s) 432, 615
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 2 cut(s) 430, 613
BstSFI CTRYAG 1 cut(s) 607
BstSNI TACGTA 2 cut(s) 388, 571
BstV1I GCAGC 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 1 cut(s) 723
BtgI CCRYGG 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 140
BtrI CACGTC 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 180, 679
Cac8I GCNNGC 2 cut(s) 259, 462
Cfr10I RCCGGY 1 cut(s) 226
Csp6I GTAC 3 cut(s) 162, 168, 174
CspAI ACCGGT 1 cut(s) 226
CviAII CATG 5 cut(s) 111, 394, 461, 466, 577
CviJI RGCY 4 cut(s) 5, 457, 640, 723
CviKI_1 RGCY 4 cut(s) 5, 457, 640, 723
CviQI GTAC 3 cut(s) 162, 168, 174
DpnI GATC 2 cut(s) 36, 678
DpnII GATC 2 cut(s) 34, 676
DraIII CACNNNGTG 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 721
Eco105I TACGTA 2 cut(s) 388, 571
Eco57I CTGAAG 1 cut(s) 791
Eco88I CYCGRG 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 430, 613
FaeI CATG 5 cut(s) 114, 397, 464, 469, 580
FalI AAGNNNNNCTT 4 cut(s) 338, 370, 521, 553
FaqI GGGAC 1 cut(s) 708
FatI CATG 5 cut(s) 110, 393, 460, 465, 576
FblI GTMKAC 2 cut(s) 9, 17
Fnu4HI GCNGC 3 cut(s) 123, 262, 458
Fsp4HI GCNGC 3 cut(s) 123, 262, 458
FspBI CTAG 7 cut(s) 153, 165, 177, 312, 437, 495, 620
GluI GCNGC 3 cut(s) 123, 262, 458
GsuI CTGGAG 1 cut(s) 768
HaeIII GGCC 1 cut(s) 723
HapII CCGG 1 cut(s) 227
Hin1II CATG 5 cut(s) 114, 397, 464, 469, 580
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 2 cut(s) 364, 547
HpaII CCGG 1 cut(s) 227
HphI GGTGA 2 cut(s) 452, 635
Hpy166II GTNNAC 3 cut(s) 10, 18, 712
Hpy188I TCNGA 4 cut(s) 291, 382, 565, 681
Hpy188III TCNNGA 2 cut(s) 32, 785
Hpy8I GTNNAC 3 cut(s) 10, 18, 712
Hpy99I CGWCG 3 cut(s) 269, 364, 547
HpyAV CCTTC 4 cut(s) 251, 378, 561, 766
HpyCH4III ACNGT 3 cut(s) 274, 287, 716
HpyCH4IV ACGT 3 cut(s) 267, 387, 570
HpyCH4V TGCA 7 cut(s) 98, 105, 257, 296, 426, 460, 609
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpySE526I ACGT 3 cut(s) 267, 387, 570
Hsp92II CATG 5 cut(s) 114, 397, 464, 469, 580
Kzo9I GATC 2 cut(s) 34, 676
LmnI GCTCC 3 cut(s) 454, 637, 787
Lsp1109I GCAGC 1 cut(s) 444
MaeI CTAG 7 cut(s) 153, 165, 177, 312, 437, 495, 620
MaeII ACGT 3 cut(s) 267, 387, 570
MaeIII GTNAC 1 cut(s) 268
MalI GATC 2 cut(s) 36, 678
MboI GATC 2 cut(s) 34, 676
MboII GAAGA 2 cut(s) 347, 530
MflI RGATCY 1 cut(s) 34
MluCI AATT 4 cut(s) 278, 445, 628, 698
MlyI GAGTC 2 cut(s) 373, 556
MmeI TCCRAC 1 cut(s) 792
MnlI CCTC 5 cut(s) 39, 70, 124, 130, 222
MroXI GAANNNNTTC 2 cut(s) 313, 496
MseI TTAA 1 cut(s) 663
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 432, 615
MvaI CCWGG 2 cut(s) 432, 615
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 2 cut(s) 34, 676
NlaIII CATG 5 cut(s) 114, 397, 464, 469, 580
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 1 cut(s) 464
PaeI GCATGC 1 cut(s) 464
PaeR7I CTCGAG 1 cut(s) 30
PdmI GAANNNNTTC 2 cut(s) 313, 496
PinAI ACCGGT 1 cut(s) 226
PkrI GCNGC 3 cut(s) 124, 263, 459
PleI GAGTC 2 cut(s) 372, 555
PpsI GAGTC 2 cut(s) 372, 555
Ppu21I YACGTR 2 cut(s) 388, 571
PshBI ATTAAT 1 cut(s) 663
Psp6I CCWGG 2 cut(s) 430, 613
PspGI CCWGG 2 cut(s) 430, 613
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 3 cut(s) 163, 169, 175
RsaNI GTAC 3 cut(s) 162, 168, 174
SalI GTCGAC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 3 cut(s) 123, 262, 458
Sau3AI GATC 2 cut(s) 34, 676
ScaI AGTACT 2 cut(s) 163, 175
SchI GAGTC 2 cut(s) 373, 556
ScrFI CCNGG 2 cut(s) 432, 615
SfcI CTRYAG 1 cut(s) 607
Sfr274I CTCGAG 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SnaBI TACGTA 2 cut(s) 388, 571
SpeI ACTAGT 3 cut(s) 164, 311, 494
SphI GCATGC 1 cut(s) 464
Sse9I AATT 4 cut(s) 278, 445, 628, 698
SsiI CCGC 2 cut(s) 122, 261
SspI AATATT 2 cut(s) 661, 667
SspMI CTAG 7 cut(s) 153, 165, 177, 312, 437, 495, 620
StyD4I CCNGG 2 cut(s) 430, 613
TaaI ACNGT 3 cut(s) 274, 287, 716
TaiI ACGT 3 cut(s) 270, 390, 573
TaqI TCGA 5 cut(s) 9, 31, 362, 545, 760
TasI AATT 4 cut(s) 278, 445, 628, 698
TatI WGTACW 2 cut(s) 161, 173
TauI GCSGC 2 cut(s) 125, 264
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 2 cut(s) 187, 679
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 1 cut(s) 457
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 6 cut(s) 60, 318, 389, 482, 501, 572
TspGWI ACGGA 4 cut(s) 35, 467, 650, 668
TspRI CASTG 2 cut(s) 187, 679
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 1 cut(s) 278
XceI RCATGY 1 cut(s) 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XhoI CTCGAG 1 cut(s) 30
XmiI GTMKAC 2 cut(s) 9, 17
XmnI GAANNNNTTC 2 cut(s) 313, 496
XspI CTAG 7 cut(s) 153, 165, 177, 312, 437, 495, 620
ZrmI AGTACT 2 cut(s) 163, 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.