Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Forward (+)

53615188 .. 53616336

Gene Structure 1149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGCTGACTGGTCGAATCTTCCTCAAGATCTTGTTAATTGTCTCGCCAAAAGAATGACCTCCTTGGAAGATTTTTTGGTTTTTGGTAGTGTTTGCAGATCATGGAGATCAAGCACGATGAACAAGAACAACTTTACTGGTGGGTTGCGACATCAAGTCCCCTTCGTTCTTCTTCCAAAGCACTACGTTGTTTCCGTTCGTAAGTTTTACAGCCTCACAAAAGGTAGGGTTTACAAGCTCAAGCTGCCAAGAACTAGGAGAAAGCTGTGCTTTTCTTGTCTGGGATGGCTAGTGACCGTATCTGAAGGATTCACCATTACTCTGTTGCATCCTCTAAATCATCATGCCCCAATTAAGTTGCCACACCCTCATATAATTAAAACTGATATGAGAGATTTTATGGACTTAAATGTAGAGAAGGTTGTCTTATCGTCCAGCCCTTCTTCGACATTGGATTACACGGTCATGGTTTTTTATAAAGCTTGTAGTCTGGCTTTTTGTAGACCGGGACAGAGTGAAAATTGGACCAAAGTTTTGACTCCTGTGCCTCCTTTGACCATTATCGTAGATTTAGCTTACTATAAGGGACAATTCTATGTGTTGACCACGGACTGCAAAATTTTGATCTGTGACATTAAAAACCCTAAGCAAGCAAAGACAATGGTTGTTGCTCAAGTCGTGCCACGAGAACAAGTAGACATATTGTTGTGGAATTCTAAGGCACAGTATCTTGTGGAGTCAGCAGAGTCCCTGTTCGTGGTTTTCGGTTTTCGAAACAAGCCGCAAGATCCCTCATACGATGATACAACAACAGCATGCTGGTTAACTGCGAAATTTAGGGTTTTCGAGGTCTATAATGGTAATTCGTGGTCGACTTCGGAGGTAAAGAATTTGGGGGTTAGAACCTTGTTCCTAGGCGACAAAAGTCGTTCCTTCTTCATTGAGGAAAATACTGTATGCAAGCCCAATTGCATATACTTCTTGAATAACTATTTCGTCAGAAGAGACGCAGCCGACATAGGTATTTTTCATATGGAAGATGGAAATATAGAGTGGTTGTTCGACAAATCCTTTATTGACATTTATTTTAAGGAGAGCAAATCCAACTCTTTTCTAAGATCACATTTATGGATTCAGCCGAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

382

Amino Acids

44.14

Weight (kDa)

9.12

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	69 - 343	2e-44	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	477
AccI	GTMKAC	3 cut(s)	502, 696, 872
AciI	CCGC	1 cut(s)	782
AclWI	GGATC	1 cut(s)	782
AcsI	RAATTY	4 cut(s)	618, 712, 833, 889
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	757
AgsI	TTSAA	1 cut(s)	985
AhdI	GACNNNNNGTC	1 cut(s)	155
AluBI	AGCT	5 cut(s)	238, 244, 265, 482, 575
AluI	AGCT	5 cut(s)	238, 244, 265, 482, 575
Alw26I	GTCTC	2 cut(s)	47, 999
AlwI	GGATC	1 cut(s)	782
ApeKI	GCWGC	2 cut(s)	244, 1010
ApoI	RAATTY	4 cut(s)	618, 712, 833, 889
ArsI	GACNNNNNNTTYG	2 cut(s)	517, 549
AspA2I	CCTAGG	1 cut(s)	913
AspS9I	GGNCC	1 cut(s)	525
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	1 cut(s)	304
AsuII	TTCGAA	1 cut(s)	772
AvaII	GGWCC	1 cut(s)	525
AvrII	CCTAGG	1 cut(s)	913
BauI	CACGAG	1 cut(s)	684
BbvI	GCAGC	2 cut(s)	231, 1022
BccI	CCATC	2 cut(s)	279, 1034
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	2 cut(s)	47, 999
BfaI	CTAG	3 cut(s)	255, 290, 914
BglII	AGATCT	1 cut(s)	28
BisI	GCNGC	3 cut(s)	245, 782, 1011
BlnI	CCTAGG	1 cut(s)	913
BlsI	GCNGC	3 cut(s)	246, 783, 1012
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	1 cut(s)	525
BmeRI	GACNNNNNGTC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	525
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	337
BoxI	GACNNNNGTC	1 cut(s)	924
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	772
BpuEI	CTTGAG	3 cut(s)	9, 224, 657
BpuMI	CCSGG	1 cut(s)	507
BsaJI	CCNNGG	3 cut(s)	63, 606, 913
Bsc4I	CCNNNNNNNGG	1 cut(s)	757
Bse1I	ACTGG	2 cut(s)	14, 142
BseDI	CCNNGG	3 cut(s)	63, 606, 913
BseGI	GGATG	2 cut(s)	290, 328
BseLI	CCNNNNNNNGG	1 cut(s)	757
BseNI	ACTGG	2 cut(s)	14, 142
BseXI	GCAGC	2 cut(s)	231, 1022
BsiSI	CCGG	1 cut(s)	506
BslFI	GGGAC	4 cut(s)	143, 522, 600, 733
BslI	CCNNNNNNNGG	1 cut(s)	757
BsmAI	GTCTC	2 cut(s)	47, 999
BsmBI	CGTCTC	1 cut(s)	999
BsmFI	GGGAC	4 cut(s)	143, 522, 600, 733
Bsp119I	TTCGAA	1 cut(s)	772
Bsp143I	GATC	6 cut(s)	28, 98, 107, 624, 787, 1118
BspACI	CCGC	1 cut(s)	782
BspPI	GGATC	1 cut(s)	782
BspT104I	TTCGAA	1 cut(s)	772
BsrI	ACTGG	2 cut(s)	14, 142
BssECI	CCNNGG	3 cut(s)	63, 606, 913
BssMI	GATC	6 cut(s)	28, 98, 107, 624, 787, 1118
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	2 cut(s)	63, 913
Bst2BI	CACGAG	1 cut(s)	684
Bst4CI	ACNGT	4 cut(s)	298, 463, 726, 955
Bst6I	CTCTTC	1 cut(s)	997
BstBI	TTCGAA	1 cut(s)	772
BstC8I	GCNNGC	3 cut(s)	651, 817, 962
BstDEI	CTNAG	3 cut(s)	645, 717, 1115
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	290, 328
BstKTI	GATC	6 cut(s)	31, 101, 110, 627, 790, 1121
BstMAI	GTCTC	2 cut(s)	47, 999
BstMBI	GATC	6 cut(s)	28, 98, 107, 624, 787, 1118
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstNSI	RCATGY	1 cut(s)	819
BstPAI	GACNNNNGTC	1 cut(s)	924
BstSCI	CCNGG	1 cut(s)	505
BstV1I	GCAGC	2 cut(s)	231, 1022
BstX2I	RGATCY	2 cut(s)	28, 787
BstYI	RGATCY	2 cut(s)	28, 787
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	2 cut(s)	290, 328
Cac8I	GCNNGC	3 cut(s)	651, 817, 962
Cfr13I	GGNCC	1 cut(s)	525
CseI	GACGC	1 cut(s)	1016
CviAII	CATG	4 cut(s)	102, 344, 466, 816
DdeI	CTNAG	3 cut(s)	645, 717, 1115
DpnI	GATC	6 cut(s)	30, 100, 109, 626, 789, 1120
DpnII	GATC	6 cut(s)	28, 98, 107, 624, 787, 1118
DriI	GACNNNNNGTC	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	997
Eam1105I	GACNNNNNGTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	997
Eco130I	CCWWGG	2 cut(s)	63, 913
Eco47I	GGWCC	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	712
EcoT14I	CCWWGG	2 cut(s)	63, 913
ErhI	CCWWGG	2 cut(s)	63, 913
Esp3I	CGTCTC	1 cut(s)	999
FaeI	CATG	4 cut(s)	105, 347, 469, 819
FalI	AAGNNNNNCTT	6 cut(s)	116, 148, 254, 286, 410, 442
FaqI	GGGAC	4 cut(s)	143, 522, 600, 733
FatI	CATG	4 cut(s)	101, 343, 465, 815
FauNDI	CATATG	1 cut(s)	1032
FblI	GTMKAC	3 cut(s)	502, 696, 872
Fnu4HI	GCNGC	3 cut(s)	245, 782, 1011
FokI	GGATG	2 cut(s)	297, 315
Fsp4HI	GCNGC	3 cut(s)	245, 782, 1011
FspBI	CTAG	3 cut(s)	255, 290, 914
GluI	GCNGC	3 cut(s)	245, 782, 1011
HapII	CCGG	1 cut(s)	506
HgaI	GACGC	1 cut(s)	1016
Hin1II	CATG	4 cut(s)	105, 347, 469, 819
HincII	GTYRAC	3 cut(s)	603, 825, 873
HindII	GTYRAC	3 cut(s)	603, 825, 873
HindIII	AAGCTT	1 cut(s)	480
HinfI	GANTC	6 cut(s)	16, 309, 538, 737, 746, 1132
HpaI	GTTAAC	1 cut(s)	825
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	6 cut(s)	232, 503, 603, 697, 825, 873
Hpy188I	TCNGA	3 cut(s)	304, 880, 1001
Hpy188III	TCNNGA	2 cut(s)	26, 982
Hpy8I	GTNNAC	6 cut(s)	232, 503, 603, 697, 825, 873
HpyAV	CCTTC	5 cut(s)	172, 299, 412, 450, 943
HpyCH4III	ACNGT	4 cut(s)	298, 463, 726, 955
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	5 cut(s)	96, 328, 615, 960, 972
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	3 cut(s)	645, 717, 1115
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	105, 347, 469, 819
KspAI	GTTAAC	1 cut(s)	825
Kzo9I	GATC	6 cut(s)	28, 98, 107, 624, 787, 1118
LpnPI	CCDG	8 cut(s)	123, 266, 448, 476, 519, 555, 764, 805
Lsp1109I	GCAGC	2 cut(s)	231, 1022
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	3 cut(s)	255, 290, 914
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	292, 629
MalI	GATC	6 cut(s)	30, 100, 109, 626, 789, 1120
MboI	GATC	6 cut(s)	28, 98, 107, 624, 787, 1118
MboII	GAAGA	8 cut(s)	11, 80, 161, 164, 435, 928, 1014, 1049
MfeI	CAATTG	1 cut(s)	967
MflI	RGATCY	2 cut(s)	28, 787
MlyI	GAGTC	3 cut(s)	532, 746, 755
MmeI	TCCRAC	1 cut(s)	1128
MseI	TTAA	8 cut(s)	36, 354, 378, 407, 636, 824, 1089, 1147
MslI	CAYNNNNRTG	2 cut(s)	464, 1126
MspI	CCGG	1 cut(s)	506
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	967
MwoI	GCNNNNNNNGC	1 cut(s)	244
NciI	CCSGG	1 cut(s)	507
NdeI	CATATG	1 cut(s)	1032
NdeII	GATC	6 cut(s)	28, 98, 107, 624, 787, 1118
NlaIII	CATG	4 cut(s)	105, 347, 469, 819
NmuCI	GTSAC	2 cut(s)	292, 629
NspI	RCATGY	1 cut(s)	819
NspV	TTCGAA	1 cut(s)	772
PaeI	GCATGC	1 cut(s)	819
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	16, 309, 1132
PkrI	GCNGC	3 cut(s)	246, 783, 1012
PleI	GAGTC	3 cut(s)	532, 745, 754
PpsI	GAGTC	3 cut(s)	532, 745, 754
PshAI	GACNNNNGTC	1 cut(s)	924
PsiI	TTATAA	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	525
PsuI	RGATCY	2 cut(s)	28, 787
RseI	CAYNNNNRTG	2 cut(s)	464, 1126
SalI	GTCGAC	1 cut(s)	871
SaqAI	TTAA	8 cut(s)	36, 354, 378, 407, 636, 824, 1089, 1147
SatI	GCNGC	3 cut(s)	245, 782, 1011
Sau3AI	GATC	6 cut(s)	28, 98, 107, 624, 787, 1118
Sau96I	GGNCC	1 cut(s)	525
SchI	GAGTC	3 cut(s)	532, 746, 755
ScrFI	CCNGG	1 cut(s)	507
SfaNI	GCATC	1 cut(s)	337
SfuI	TTCGAA	1 cut(s)	772
SinI	GGWCC	1 cut(s)	525
SmiMI	CAYNNNNRTG	2 cut(s)	464, 1126
SmlI	CTYRAG	3 cut(s)	24, 239, 672
SmoI	CTYRAG	3 cut(s)	24, 239, 672
SphI	GCATGC	1 cut(s)	819
SsiI	CCGC	1 cut(s)	782
SspMI	CTAG	3 cut(s)	255, 290, 914
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	2 cut(s)	63, 913
TaaI	ACNGT	4 cut(s)	298, 463, 726, 955
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	6 cut(s)	14, 446, 772, 846, 872, 1062
TauI	GCSGC	1 cut(s)	784
TfiI	GAWTC	3 cut(s)	16, 309, 1132
Tru1I	TTAA	8 cut(s)	36, 354, 378, 407, 636, 824, 1089, 1147
Tru9I	TTAA	8 cut(s)	36, 354, 378, 407, 636, 824, 1089, 1147
TseFI	GTSAC	2 cut(s)	292, 629
TseI	GCWGC	2 cut(s)	244, 1010
Tsp45I	GTSAC	2 cut(s)	292, 629
TspDTI	ATGAA	3 cut(s)	134, 928, 1019
TspGWI	ACGGA	2 cut(s)	184, 623
VpaK11BI	GGWCC	1 cut(s)	525
XapI	RAATTY	4 cut(s)	618, 712, 833, 889
XceI	RCATGY	1 cut(s)	819
XmaJI	CCTAGG	1 cut(s)	913
XmiI	GTMKAC	3 cut(s)	502, 696, 872
XspI	CTAG	3 cut(s)	255, 290, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.