FvH4_3g19214

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000399
Physical Location & Seq
Forward (+)
12406413 .. 12407003
591 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19214.t1

Sequence Viewer

Length: 330 bp
ATGGCTGATGACTGTGTCAGAAGATGCAATCGTTATAAAGCTGTTGCACTCTTTGAATCAGCAAAGAACAATGAATGGACTACAGTACTGGATACTTGGGAAACTGCAACTAACAACTACATTGATCTCACTTATTATAAGAAGCAATTTTATGTCTTGGATGGCCAAGGTCGTGTTTTGGTTTGTGACATTGAAGACCCTAAGAAAGCAAAAACGCGGAACGATCAAGACTGGGGTTTCATCGGAATATGGTTAAGGTTTCTGAGGTGCCATTTAGCAACCGCGATTGGACATACTCCGAAGTCAAGAACTTGGGAAATAGAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

110

Amino Acids

12.88

Weight (kDa)

7.67

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 12 - 69 1.9e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 36, 138
AccB1I GGYRCC 1 cut(s) 267
AccII CGCG 2 cut(s) 217, 284
AciI CCGC 2 cut(s) 217, 282
AcoI YGGCCR 1 cut(s) 163
AfaI GTAC 1 cut(s) 87
AgsI TTSAA 2 cut(s) 56, 194
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AoxI GGCC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 1 cut(s) 155
BciVI GTATCC 1 cut(s) 85
BfmI CTRYAG 1 cut(s) 81
BfuI GTATCC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 269
BmrI ACTGGG 1 cut(s) 241
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 166
Bse1I ACTGG 2 cut(s) 93, 236
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 93, 236
Bsh1236I CGCG 2 cut(s) 217, 284
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 267
BsnI GGCC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 124, 223
BspACI CCGC 2 cut(s) 217, 282
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 255
BspFNI CGCG 2 cut(s) 217, 284
BspLI GGNNCC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 267
BsrI ACTGG 2 cut(s) 93, 236
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 2 cut(s) 124, 223
BssT1I CCWWGG 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 14, 85
BstDEI CTNAG 2 cut(s) 201, 263
BstF5I GGATG 1 cut(s) 166
BstFNI CGCG 2 cut(s) 217, 284
BstKTI GATC 2 cut(s) 127, 226
BstMBI GATC 2 cut(s) 124, 223
BstSFI CTRYAG 1 cut(s) 81
BstUI CGCG 2 cut(s) 217, 284
BstV2I GAAGAC 1 cut(s) 201
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 166
Csp6I GTAC 1 cut(s) 86
CviJI RGCY 3 cut(s) 5, 41, 165
CviKI_1 RGCY 3 cut(s) 5, 41, 165
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 2 cut(s) 201, 263
DpnI GATC 2 cut(s) 126, 225
DpnII GATC 2 cut(s) 124, 223
EaeI YGGCCR 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaiI YATR 5 cut(s) 36, 138, 153, 250, 294
FokI GGATG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 165
HinfI GANTC 1 cut(s) 56
Hpy188I TCNGA 4 cut(s) 20, 245, 264, 300
Hpy188III TCNNGA 2 cut(s) 227, 306
HpyCH4III ACNGT 2 cut(s) 14, 85
HpyCH4V TGCA 3 cut(s) 27, 47, 107
HpyF3I CTNAG 2 cut(s) 201, 263
Kzo9I GATC 2 cut(s) 124, 223
LpnPI CCDG 2 cut(s) 74, 217
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 185
MalI GATC 2 cut(s) 126, 225
MboI GATC 2 cut(s) 124, 223
MboII GAAGA 2 cut(s) 33, 206
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 1 cut(s) 146
MluNI TGGCCA 1 cut(s) 165
MnlI CCTC 1 cut(s) 258
Mox20I TGGCCA 1 cut(s) 165
MscI TGGCCA 1 cut(s) 165
MseI TTAA 1 cut(s) 254
Msp20I TGGCCA 1 cut(s) 165
MvnI CGCG 2 cut(s) 217, 284
NdeII GATC 2 cut(s) 124, 223
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 56
PflFI GACNNNGTC 1 cut(s) 14
PsiI TTATAA 2 cut(s) 36, 138
PspN4I GGNNCC 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 254
Sau3AI GATC 2 cut(s) 124, 223
ScaI AGTACT 1 cut(s) 87
SetI ASST 4 cut(s) 43, 172, 260, 269
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 81
Sse9I AATT 1 cut(s) 146
SsiI CCGC 2 cut(s) 217, 282
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 14, 85
TasI AATT 1 cut(s) 146
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 87, 229
Tth111I GACNNNGTC 1 cut(s) 14
ZrmI AGTACT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.