RchiOBHm_Chr5g0032291

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000399
Physical Location & Seq
Forward (+)
25948926 .. 25949993
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31148

Sequence Viewer

Length: 1068 bp
ATGTCTTCATTGGCTAACTGGTCAGATCTTCCTCAAGATCTTGCTATCTCTATTGCTAAGCTGATGGTTTGCATGGAGGACTTTTTATCTTTTGGGGCGGTCTGTAAATCATGGAGATCCACTGCCACAAAAGAAAACTTTACTGGTGGATTAAAACGTCAAGTTCCGTTCCTTATATTACCCGAGAAGGAGGGCACGGCCAATCGTGAGTTATACAACTTGACAAAGGTTAAGTGTTTTGAACTTTCTGGGCTAGAAGTTAAGGGTCATAGTTTGTTTTCTTCTCTTGGATGGCTGATAACTGAATCAAAAGATGCAAAAGTTTTAACGCTATTGCATCCTTTAAATCATACCCAAATCAAGTTACCAGAGAACTTCCGATACGAATTTATAAAGTCGTTTGCCTTATCAGCAAGTCCTTCCTTGACATCGGATTTCGTTGTCATGGTTCTTTATCATTGCCACAGGGGATTGGCTTTTTGCAGAGCAAAGGACAACGAATGGACTAGAGTGGATGCAAAGAAAAGGGGAAACAATTCCTACTTTGATCTCACTTATTATAGGGAGCAATTTTATGTCTTGGATCTTCATGGCCGTGTTTTGGTTTGTGACATTGAAGACCCTAAGAAAGCAAAAACACGGGTAGTTGTTCCACAGATACCAAGGGATACAAGTTTTGAAGATTATCAGACCAGATTATACCTGGTGGAATCAGCAGGAACCTTACTTGTTGTACGAGTGAGCTATCAGGATAAAACCATTGGGTTTAGGGTTTTTGAGGTGCCATTTAGCAATTGCGATTGGTCATACTCCGAAGTTAAGAATTTGGGAAATAGAACCTTGTTCTTGAATGTTTTCGGTTCTTCCTTTTCAATTGAGGCTTCAAACTACTCCGGCGTCAAGTCCAATTGCATATACTTCAGATCTATTCTATTCAGTTTGGACGAAGAAGCGGGCTCGGGCATGTGTATCTTTGATACGGAAGATGAAAAAAGTGACTTGCGTGGGGTTTTTATAAACTCTTCTCGTTTTGCAATGTCCTATTTATGGATCCAACCCAGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

355

Amino Acids

40.57

Weight (kDa)

6.99

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 72 - 326 7.4e-50 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 392, 1016
AccB1I GGYRCC 1 cut(s) 781
AciI CCGC 2 cut(s) 98, 953
AclWI GGATC 4 cut(s) 111, 591, 1045, 1058
AcoI YGGCCR 2 cut(s) 198, 592
AcsI RAATTY 2 cut(s) 386, 823
AcuI CTGAAG 1 cut(s) 904
AcyI GRCGYC 1 cut(s) 897
AfaI GTAC 1 cut(s) 735
AfiI CCNNNNNNNGG 2 cut(s) 601, 1047
AgsI TTSAA 6 cut(s) 242, 617, 680, 850, 873, 885
AjnI CCWGG 1 cut(s) 702
AluBI AGCT 2 cut(s) 61, 744
AluI AGCT 2 cut(s) 61, 744
AlwI GGATC 4 cut(s) 111, 591, 1045, 1058
Ama87I CYCGRG 2 cut(s) 182, 958
AoxI GGCC 2 cut(s) 198, 592
ApoI RAATTY 2 cut(s) 386, 823
Asp700I GAANNNNTTC 2 cut(s) 535, 854
AvaI CYCGRG 2 cut(s) 182, 958
BaeGI GKGCMC 1 cut(s) 197
BamHI GGATCC 1 cut(s) 1050
BanI GGYRCC 1 cut(s) 781
BanII GRGCYC 1 cut(s) 959
BbsI GAAGAC 1 cut(s) 624
BccI CCATC 2 cut(s) 58, 285
BceAI ACGGC 2 cut(s) 213, 579
BciT130I CCWGG 1 cut(s) 704
BciVI GTATCC 1 cut(s) 661
BfaI CTAG 2 cut(s) 254, 507
BfuI GTATCC 1 cut(s) 661
BglII AGATCT 3 cut(s) 25, 37, 923
BlpI GCTNAGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 704
BmeT110I CYCGRG 2 cut(s) 182, 958
BmiI GGNNCC 3 cut(s) 721, 783, 1052
BmrFI CCNGG 1 cut(s) 704
BmrI ACTGGG 1 cut(s) 1053
BmsI GCATC 3 cut(s) 304, 346, 505
BmuI ACTGGG 1 cut(s) 1053
BpiI GAAGAC 1 cut(s) 624
Bpu1102I GCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 897
BsaJI CCNNGG 1 cut(s) 662
Bsc4I CCNNNNNNNGG 2 cut(s) 601, 1047
Bse1I ACTGG 3 cut(s) 23, 148, 1059
Bse3DI GCAATG 2 cut(s) 457, 1041
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 1 cut(s) 662
BseGI GGATG 3 cut(s) 296, 337, 520
BseLI CCNNNNNNNGG 2 cut(s) 601, 1047
BseMI GCAATG 2 cut(s) 457, 1041
BseNI ACTGG 3 cut(s) 23, 148, 1059
BseSI GKGCMC 1 cut(s) 197
BshFI GGCC 2 cut(s) 200, 594
BshNI GGYRCC 1 cut(s) 781
BsiHKCI CYCGRG 2 cut(s) 182, 958
BsiSI CCGG 1 cut(s) 894
BslI CCNNNNNNNGG 2 cut(s) 601, 1047
BsnI GGCC 2 cut(s) 200, 594
BsoBI CYCGRG 2 cut(s) 182, 958
Bsp1286I GDGCHC 2 cut(s) 197, 959
Bsp143I GATC 7 cut(s) 25, 37, 116, 547, 583, 923, 1050
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 2 cut(s) 98, 953
BspANI GGCC 2 cut(s) 200, 594
BspLI GGNNCC 3 cut(s) 721, 783, 1052
BspPI GGATC 4 cut(s) 111, 591, 1045, 1058
BspT107I GGYRCC 1 cut(s) 781
BsrDI GCAATG 2 cut(s) 457, 1041
BsrI ACTGG 3 cut(s) 23, 148, 1059
BssECI CCNNGG 1 cut(s) 662
BssMI GATC 7 cut(s) 25, 37, 116, 547, 583, 923, 1050
BssNI GRCGYC 1 cut(s) 897
BssT1I CCWWGG 1 cut(s) 662
Bst2UI CCWGG 1 cut(s) 704
Bst6I CTCTTC 1 cut(s) 1027
BstACI GRCGYC 1 cut(s) 897
BstC8I GCNNGC 1 cut(s) 955
BstDEI CTNAG 2 cut(s) 57, 624
BstF5I GGATG 3 cut(s) 296, 337, 520
BstKTI GATC 7 cut(s) 28, 40, 119, 550, 586, 926, 1053
BstMBI GATC 7 cut(s) 25, 37, 116, 547, 583, 923, 1050
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 1 cut(s) 704
BstNSI RCATGY 1 cut(s) 967
BstSCI CCNGG 1 cut(s) 702
BstSLI GKGCMC 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 6 cut(s) 25, 37, 116, 583, 923, 1050
BstYI RGATCY 6 cut(s) 25, 37, 116, 583, 923, 1050
BsuI GTATCC 1 cut(s) 661
BsuRI GGCC 2 cut(s) 200, 594
BtsCI GGATG 3 cut(s) 296, 337, 520
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 955
CseI GACGC 1 cut(s) 886
CsiI ACCWGGT 1 cut(s) 702
Csp6I GTAC 1 cut(s) 734
CviAII CATG 5 cut(s) 73, 111, 445, 590, 964
CviQI GTAC 1 cut(s) 734
DdeI CTNAG 2 cut(s) 57, 624
DpnI GATC 7 cut(s) 27, 39, 118, 549, 585, 925, 1052
DpnII GATC 7 cut(s) 25, 37, 116, 547, 583, 923, 1050
DraI TTTAAA 1 cut(s) 345
EaeI YGGCCR 2 cut(s) 198, 592
Eam1104I CTCTTC 1 cut(s) 1027
EarI CTCTTC 1 cut(s) 1027
Eco130I CCWWGG 1 cut(s) 662
Eco24I GRGCYC 1 cut(s) 959
Eco57I CTGAAG 1 cut(s) 904
Eco88I CYCGRG 2 cut(s) 182, 958
EcoRII CCWGG 1 cut(s) 702
EcoT14I CCWWGG 1 cut(s) 662
EcoT38I GRGCYC 1 cut(s) 959
ErhI CCWWGG 1 cut(s) 662
FaeI CATG 5 cut(s) 76, 114, 448, 593, 967
FatI CATG 5 cut(s) 72, 110, 444, 589, 963
FauI CCCGC 1 cut(s) 946
FokI GGATG 3 cut(s) 303, 324, 527
FriOI GRGCYC 1 cut(s) 959
FspBI CTAG 2 cut(s) 254, 507
HaeIII GGCC 2 cut(s) 200, 594
HapII CCGG 1 cut(s) 894
HgaI GACGC 1 cut(s) 886
Hin1I GRCGYC 1 cut(s) 897
Hin1II CATG 5 cut(s) 76, 114, 448, 593, 967
HinfI GANTC 2 cut(s) 305, 710
HpaII CCGG 1 cut(s) 894
Hpy188I TCNGA 6 cut(s) 25, 380, 433, 690, 814, 923
Hpy188III TCNNGA 4 cut(s) 35, 206, 749, 847
HpyAV CCTTC 2 cut(s) 181, 429
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 7 cut(s) 72, 317, 337, 483, 518, 912, 1034
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 2 cut(s) 57, 624
HpySE526I ACGT 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 897
Hsp92II CATG 5 cut(s) 76, 114, 448, 593, 967
Kzo9I GATC 7 cut(s) 25, 37, 116, 547, 583, 923, 1050
LmnI GCTCC 1 cut(s) 565
LweI GCATC 3 cut(s) 304, 346, 505
MabI ACCWGGT 1 cut(s) 702
MaeI CTAG 2 cut(s) 254, 507
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 3 cut(s) 363, 608, 995
MalI GATC 7 cut(s) 27, 39, 118, 549, 585, 925, 1052
MboI GATC 7 cut(s) 25, 37, 116, 547, 583, 923, 1050
MboII GAAGA 9 cut(s) 20, 273, 578, 629, 692, 855, 959, 995, 1014
MfeI CAATTG 3 cut(s) 793, 873, 907
MflI RGATCY 6 cut(s) 25, 37, 116, 583, 923, 1050
MhlI GDGCHC 2 cut(s) 197, 959
MluCI AATT 7 cut(s) 386, 535, 569, 793, 823, 873, 907
MnlI CCTC 5 cut(s) 42, 70, 184, 772, 871
MroXI GAANNNNTTC 2 cut(s) 535, 854
MseI TTAA 7 cut(s) 152, 231, 261, 326, 344, 819, 1066
MslI CAYNNNNRTG 1 cut(s) 594
MspI CCGG 1 cut(s) 894
MspR9I CCNGG 1 cut(s) 704
MunI CAATTG 3 cut(s) 793, 873, 907
MvaI CCWGG 1 cut(s) 704
MwoI GCNNNNNNNGC 1 cut(s) 410
NdeII GATC 7 cut(s) 25, 37, 116, 547, 583, 923, 1050
NlaIII CATG 5 cut(s) 76, 114, 448, 593, 967
NlaIV GGNNCC 3 cut(s) 721, 783, 1052
NmuCI GTSAC 2 cut(s) 608, 995
NspI RCATGY 1 cut(s) 967
PdmI GAANNNNTTC 2 cut(s) 535, 854
PfeI GAWTC 2 cut(s) 305, 710
PsiI TTATAA 2 cut(s) 392, 1016
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PspN4I GGNNCC 3 cut(s) 721, 783, 1052
PsrI GAACNNNNNNTAC 2 cut(s) 365, 397
PsuI RGATCY 6 cut(s) 25, 37, 116, 583, 923, 1050
RsaI GTAC 1 cut(s) 735
RsaNI GTAC 1 cut(s) 734
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 7 cut(s) 152, 231, 261, 326, 344, 819, 1066
Sau3AI GATC 7 cut(s) 25, 37, 116, 547, 583, 923, 1050
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 2 cut(s) 197, 959
SetI ASST 8 cut(s) 63, 160, 231, 705, 725, 746, 783, 842
SexAI ACCWGGT 1 cut(s) 702
SfaNI GCATC 3 cut(s) 304, 346, 505
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 7 cut(s) 386, 535, 569, 793, 823, 873, 907
SsiI CCGC 2 cut(s) 98, 953
SspMI CTAG 2 cut(s) 254, 507
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 1 cut(s) 662
TaiI ACGT 1 cut(s) 160
TasI AATT 7 cut(s) 386, 535, 569, 793, 823, 873, 907
TfiI GAWTC 2 cut(s) 305, 710
Tru1I TTAA 7 cut(s) 152, 231, 261, 326, 344, 819, 1066
Tru9I TTAA 7 cut(s) 152, 231, 261, 326, 344, 819, 1066
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 2 cut(s) 608, 995
Tsp45I GTSAC 2 cut(s) 608, 995
TspDTI ATGAA 2 cut(s) 578, 1002
TspGWI ACGGA 2 cut(s) 156, 995
TspRI CASTG 1 cut(s) 127
XapI RAATTY 2 cut(s) 386, 823
XceI RCATGY 1 cut(s) 967
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XmnI GAANNNNTTC 2 cut(s) 535, 854
XspI CTAG 2 cut(s) 254, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.