RchiOBHm_Chr6g0290601

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000399
Physical Location & Seq
Reverse (-)
53649563 .. 53650702
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26074

Sequence Viewer

Length: 1140 bp
ATGGCTGACTGGTCGAATCTTCCTCAAGATCTTGTTACTTGTCTCGCCAAAAGAATGACCTCCTTGGAAGATTTTTTGGTTTTTGGTGGTGTTTGCAGATCATGGAGATCAAGCACGATGAACAAGAACAACTTTACTGGTGGGTTGCGACATCAAGTCCCCTTCGTTCTTCTTCCAAAGCACTACGTTGTTTCCGTTCGTAAGTTTTACAGCCTCACAAAAGGTAGGGTTTACAAGCTCAAGCTGCCAAGAACTAGGAGAAAGCTGTGCTTTTCTTGTCTGGGGTGGCTAGTGACCGTATCTGAAGGATTCACCATTACTCTGCTGCATCCCCTAAATCATCATGCCCCGATTAAGTTGCCGCACCCTCAGATAATTAAAACTGATATGAGATATTTTAAGAACTTAAATGTAGAGAAGGTTGTCTTATCGTCCAGCCCTTCTTCGACGTTGGATTACACAGTCATGGTTTCTTATAAAGCTTGTAGTCTGGCTTTCTGTAGACCGGGACAGAGTGAAAATTGGACCCAAGTTTTGACTCCTTTGACCCTTATAATAGATTTAGCATACTATAAGGGTCAATTCTATGGGTTGACCACGGACTGCAAAATTTTGATCTGTGATATTAAAAACCCTAAGCAAGCGAAGGCAACGGTTGTTGCTCAAGTCGTGCCACGAGAACAAGTAGACATATTGTTGTGGAATTCTAAGGCACAGTATCTTGTGGAGTCAGCAGAGTCCCTGTTCGTGGTTTTCGGTTTTCGAAACAAGCCGCAAGATCCCTCATACGATGATACAACATCAGCATGCTGGTTAACTGCGAAATTTAGGGTTTTCGAGGTCTATAATGGTAATTCGTGGTCGACTTCGGAGGTAAAGAATTTGGGGGTTAGAACCTTGTTCCTAGGCGACAAAAGTCGTTCCTTCTTCATTGAGGAAAATACTGTATGCAAGCCCAATTGCATATACTTCTTGAATAACTATTTCGTCAGAAGAGACGCAGCCGACATAGGTATTTTTCATATGGAAGATGGAAATATAGAGTGGTTGTTCGACAAATCCTTTATTGACATTTATTTTAAGGAGAGCAAATCCAACTCTTTTCTAAGATCACATTTATGGATTCAGCCGAGTTTTTAA

Protein Analysis

379

Amino Acids

43.68

Weight (kDa)

9.23

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 69 - 340 1.6e-43 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 477, 554
AccI GTMKAC 3 cut(s) 502, 687, 863
AciI CCGC 2 cut(s) 362, 773
AclWI GGATC 1 cut(s) 773
AcsI RAATTY 4 cut(s) 609, 703, 824, 880
AcuI CTGAAG 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 748
AgsI TTSAA 1 cut(s) 976
AhdI GACNNNNNGTC 1 cut(s) 155
AluBI AGCT 4 cut(s) 238, 244, 265, 482
AluI AGCT 4 cut(s) 238, 244, 265, 482
Alw26I GTCTC 2 cut(s) 47, 990
AlwI GGATC 1 cut(s) 773
ApeKI GCWGC 3 cut(s) 244, 325, 1001
ApoI RAATTY 4 cut(s) 609, 703, 824, 880
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
AspA2I CCTAGG 1 cut(s) 904
AspS9I GGNCC 1 cut(s) 525
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 304
AsuII TTCGAA 1 cut(s) 763
AvaII GGWCC 1 cut(s) 525
AvrII CCTAGG 1 cut(s) 904
BauI CACGAG 1 cut(s) 675
BbvI GCAGC 3 cut(s) 231, 312, 1013
BccI CCATC 1 cut(s) 1025
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 2 cut(s) 47, 990
BfaI CTAG 3 cut(s) 255, 290, 905
BfmI CTRYAG 1 cut(s) 499
BglII AGATCT 1 cut(s) 28
BisI GCNGC 5 cut(s) 245, 326, 362, 773, 1002
BlnI CCTAGG 1 cut(s) 904
BlsI GCNGC 5 cut(s) 246, 327, 363, 774, 1003
Bme1390I CCNGG 1 cut(s) 507
Bme18I GGWCC 1 cut(s) 525
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 525
BmiI GGNNCC 1 cut(s) 527
BmrFI CCNGG 1 cut(s) 507
BmsI GCATC 1 cut(s) 337
BoxI GACNNNNGTC 1 cut(s) 915
Bpu10I CCTNAGC 1 cut(s) 636
Bpu14I TTCGAA 1 cut(s) 763
BpuEI CTTGAG 3 cut(s) 9, 224, 648
BpuMI CCSGG 1 cut(s) 507
BsaJI CCNNGG 3 cut(s) 63, 597, 904
Bsc4I CCNNNNNNNGG 1 cut(s) 748
Bse1I ACTGG 2 cut(s) 14, 142
BseDI CCNNGG 3 cut(s) 63, 597, 904
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 748
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 2 cut(s) 14, 142
BseXI GCAGC 3 cut(s) 231, 312, 1013
BsiSI CCGG 1 cut(s) 506
BslFI GGGAC 3 cut(s) 143, 522, 724
BslI CCNNNNNNNGG 1 cut(s) 748
BsmAI GTCTC 2 cut(s) 47, 990
BsmBI CGTCTC 1 cut(s) 990
BsmFI GGGAC 3 cut(s) 143, 522, 724
Bsp119I TTCGAA 1 cut(s) 763
Bsp143I GATC 6 cut(s) 28, 98, 107, 615, 778, 1109
BspACI CCGC 2 cut(s) 362, 773
BspCNI CTCAG 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 527
BspPI GGATC 1 cut(s) 773
BspT104I TTCGAA 1 cut(s) 763
BsrI ACTGG 2 cut(s) 14, 142
BssECI CCNNGG 3 cut(s) 63, 597, 904
BssMI GATC 6 cut(s) 28, 98, 107, 615, 778, 1109
BssSI CACGAG 1 cut(s) 675
BssT1I CCWWGG 2 cut(s) 63, 904
Bst2BI CACGAG 1 cut(s) 675
Bst4CI ACNGT 5 cut(s) 298, 463, 655, 717, 946
Bst6I CTCTTC 1 cut(s) 988
BstBI TTCGAA 1 cut(s) 763
BstC8I GCNNGC 3 cut(s) 642, 808, 953
BstDEI CTNAG 4 cut(s) 369, 636, 708, 1106
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 6 cut(s) 31, 101, 110, 618, 781, 1112
BstMAI GTCTC 2 cut(s) 47, 990
BstMBI GATC 6 cut(s) 28, 98, 107, 615, 778, 1109
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 810
BstPAI GACNNNNGTC 1 cut(s) 915
BstSCI CCNGG 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 499
BstV1I GCAGC 3 cut(s) 231, 312, 1013
BstX2I RGATCY 2 cut(s) 28, 778
BstYI RGATCY 2 cut(s) 28, 778
BtgI CCRYGG 1 cut(s) 597
BtsCI GGATG 1 cut(s) 328
Cac8I GCNNGC 3 cut(s) 642, 808, 953
Cfr13I GGNCC 1 cut(s) 525
CseI GACGC 1 cut(s) 1007
CviAII CATG 4 cut(s) 102, 344, 466, 807
DdeI CTNAG 4 cut(s) 369, 636, 708, 1106
DpnI GATC 6 cut(s) 30, 100, 109, 617, 780, 1111
DpnII GATC 6 cut(s) 28, 98, 107, 615, 778, 1109
DriI GACNNNNNGTC 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 988
Eam1105I GACNNNNNGTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 988
Eco130I CCWWGG 2 cut(s) 63, 904
Eco47I GGWCC 1 cut(s) 525
Eco57I CTGAAG 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 703
EcoT14I CCWWGG 2 cut(s) 63, 904
ErhI CCWWGG 2 cut(s) 63, 904
Esp3I CGTCTC 1 cut(s) 990
FaeI CATG 4 cut(s) 105, 347, 469, 810
FalI AAGNNNNNCTT 6 cut(s) 116, 148, 254, 286, 410, 442
FaqI GGGAC 3 cut(s) 143, 522, 724
FatI CATG 4 cut(s) 101, 343, 465, 806
FauNDI CATATG 1 cut(s) 1023
FblI GTMKAC 3 cut(s) 502, 687, 863
Fnu4HI GCNGC 5 cut(s) 245, 326, 362, 773, 1002
FokI GGATG 1 cut(s) 315
Fsp4HI GCNGC 5 cut(s) 245, 326, 362, 773, 1002
FspBI CTAG 3 cut(s) 255, 290, 905
GluI GCNGC 5 cut(s) 245, 326, 362, 773, 1002
HapII CCGG 1 cut(s) 506
HgaI GACGC 1 cut(s) 1007
Hin1II CATG 4 cut(s) 105, 347, 469, 810
HincII GTYRAC 3 cut(s) 594, 816, 864
HindII GTYRAC 3 cut(s) 594, 816, 864
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 6 cut(s) 16, 309, 538, 728, 737, 1123
HpaI GTTAAC 1 cut(s) 816
HpaII CCGG 1 cut(s) 506
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 6 cut(s) 232, 503, 594, 688, 816, 864
Hpy188I TCNGA 4 cut(s) 304, 372, 871, 992
Hpy188III TCNNGA 2 cut(s) 26, 973
Hpy8I GTNNAC 6 cut(s) 232, 503, 594, 688, 816, 864
Hpy99I CGWCG 1 cut(s) 451
HpyAV CCTTC 6 cut(s) 172, 299, 412, 450, 640, 934
HpyCH4III ACNGT 5 cut(s) 298, 463, 655, 717, 946
HpyCH4IV ACGT 2 cut(s) 186, 449
HpyCH4V TGCA 5 cut(s) 96, 328, 606, 951, 963
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 4 cut(s) 369, 636, 708, 1106
HpySE526I ACGT 2 cut(s) 186, 449
Hsp92II CATG 4 cut(s) 105, 347, 469, 810
KspAI GTTAAC 1 cut(s) 816
Kzo9I GATC 6 cut(s) 28, 98, 107, 615, 778, 1109
LpnPI CCDG 7 cut(s) 123, 266, 448, 476, 519, 755, 796
Lsp1109I GCAGC 3 cut(s) 231, 312, 1013
LweI GCATC 1 cut(s) 337
MaeI CTAG 3 cut(s) 255, 290, 905
MaeII ACGT 2 cut(s) 186, 449
MaeIII GTNAC 2 cut(s) 34, 292
MalI GATC 6 cut(s) 30, 100, 109, 617, 780, 1111
MboI GATC 6 cut(s) 28, 98, 107, 615, 778, 1109
MboII GAAGA 8 cut(s) 11, 80, 161, 164, 435, 919, 1005, 1040
MfeI CAATTG 1 cut(s) 958
MflI RGATCY 2 cut(s) 28, 778
MluCI AATT 9 cut(s) 375, 520, 581, 609, 703, 824, 853, 880, 958
MlyI GAGTC 3 cut(s) 532, 737, 746
MmeI TCCRAC 2 cut(s) 432, 1119
MnlI CCTC 8 cut(s) 33, 70, 224, 378, 793, 832, 865, 928
MseI TTAA 8 cut(s) 354, 378, 399, 407, 627, 815, 1080, 1138
MslI CAYNNNNRTG 3 cut(s) 464, 805, 1117
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 1 cut(s) 507
MunI CAATTG 1 cut(s) 958
MwoI GCNNNNNNNGC 1 cut(s) 244
NciI CCSGG 1 cut(s) 507
NdeI CATATG 1 cut(s) 1023
NdeII GATC 6 cut(s) 28, 98, 107, 615, 778, 1109
NlaIII CATG 4 cut(s) 105, 347, 469, 810
NlaIV GGNNCC 1 cut(s) 527
NmuCI GTSAC 1 cut(s) 292
NspI RCATGY 1 cut(s) 810
NspV TTCGAA 1 cut(s) 763
PaeI GCATGC 1 cut(s) 810
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 3 cut(s) 16, 309, 1123
PkrI GCNGC 5 cut(s) 246, 327, 363, 774, 1003
PleI GAGTC 3 cut(s) 532, 736, 745
PpsI GAGTC 3 cut(s) 532, 736, 745
PshAI GACNNNNGTC 1 cut(s) 915
PsiI TTATAA 2 cut(s) 477, 554
PspN4I GGNNCC 1 cut(s) 527
PspPI GGNCC 1 cut(s) 525
PsuI RGATCY 2 cut(s) 28, 778
RseI CAYNNNNRTG 3 cut(s) 464, 805, 1117
SalI GTCGAC 1 cut(s) 862
SaqAI TTAA 8 cut(s) 354, 378, 399, 407, 627, 815, 1080, 1138
SatI GCNGC 5 cut(s) 245, 326, 362, 773, 1002
Sau3AI GATC 6 cut(s) 28, 98, 107, 615, 778, 1109
Sau96I GGNCC 1 cut(s) 525
SchI GAGTC 3 cut(s) 532, 737, 746
ScrFI CCNGG 1 cut(s) 507
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 499
SfuI TTCGAA 1 cut(s) 763
SinI GGWCC 1 cut(s) 525
SmiMI CAYNNNNRTG 3 cut(s) 464, 805, 1117
SmlI CTYRAG 3 cut(s) 24, 239, 663
SmoI CTYRAG 3 cut(s) 24, 239, 663
SphI GCATGC 1 cut(s) 810
Sse9I AATT 9 cut(s) 375, 520, 581, 609, 703, 824, 853, 880, 958
SsiI CCGC 2 cut(s) 362, 773
SspMI CTAG 3 cut(s) 255, 290, 905
StyD4I CCNGG 1 cut(s) 505
StyI CCWWGG 2 cut(s) 63, 904
TaaI ACNGT 5 cut(s) 298, 463, 655, 717, 946
TaiI ACGT 2 cut(s) 189, 452
TaqI TCGA 6 cut(s) 14, 446, 763, 837, 863, 1053
TasI AATT 9 cut(s) 375, 520, 581, 609, 703, 824, 853, 880, 958
TauI GCSGC 2 cut(s) 364, 775
TfiI GAWTC 3 cut(s) 16, 309, 1123
Tru1I TTAA 8 cut(s) 354, 378, 399, 407, 627, 815, 1080, 1138
Tru9I TTAA 8 cut(s) 354, 378, 399, 407, 627, 815, 1080, 1138
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 3 cut(s) 244, 325, 1001
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 134, 919, 1010
TspGWI ACGGA 2 cut(s) 184, 614
VpaK11BI GGWCC 1 cut(s) 525
XapI RAATTY 4 cut(s) 609, 703, 824, 880
XceI RCATGY 1 cut(s) 810
XmaJI CCTAGG 1 cut(s) 904
XmiI GTMKAC 3 cut(s) 502, 687, 863
XspI CTAG 3 cut(s) 255, 290, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.