FvH4_7g21350

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000399
Physical Location & Seq
Reverse (-)
17116012 .. 17117055
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21350.t1

Sequence Viewer

Length: 1044 bp
ATGAAGGATTTCTTTGCTTTTGGAGGAGTTTCCAAATCATGGAGATCAGCGATCAAGGAAAATTCTAATACAGCTCTAAGATTACAGCATAAAGTTCCAGTCCTAATTCTTTCAAAGGAGATCAACACTCCCGTCCGCAATATCTACAGCTTGACAGAAGGTCAAATTTCCCAGCTTGATTTACTAGAAACTAAGGGCAAACTTTGCTTTTCTTCTCTAGGATGGTTGTTGACTGTATCCCACGATTATTCCACACTTGATCTTTTTAATCCGTTAACCCATGCCCATATTGAGCTACCTCCTCCTCTGCCGCCAAAAAAATTCTCGCTTCGTAACTTGAAGAAGTTTGTATTGTCATCGAGCCCTTCTTTTACATCGGATTATGGGGTCATGCTTCTATCATATCATCATTTAGCATTCTACAAGCCGGGGTACAACAATGGTACATGGACTCTGGGGCCTATACCTTTACCGGAGCCGTTAATATTAGTTGATGCAGTTTATTACAAGGGACAATTTTATGTGGTGGACTATCGTGGTAAGGTTTTTGTTTGTAAGATCGAAGATCCTAATAATGCAGCACAAATGAGGCTTGTGGCTCCAGAGATTCCTGAACAACTCTTCGGCAAAGATATTCATTTTATTGCACGATATTTAGTGGAATCAGCAACAGGGACCCTGTTATTGGTTGTCACTTTATACGAAGACAACTGTGAAGTAACTACTGGTTGTAGGGTGTTCGAGGTGCCGATTAATACAGGTAATTCATGGGCAAAATCAGAAGTAAAGAATTTGGGGAATACAACCTTGTTTGTGGGTGCAAACAATTCTTCATTCTGGATTGAGCCCTTGGATGATTCTGTATGCAAAGCCAATTGTATTTATTTCCTAAACCGGAGCCACGTCTCTACGGCAGATGACATCGACATTGGTATTTACCATATGAAGGATGGAAAAATGGACAAACACTTGGAAGAATTGCCAGATTTTAAGTACAAAGGAAGTTCATTAACATCGCATTCATGGCTTCAACCGAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

348

Amino Acids

39.11

Weight (kDa)

6.59

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 49 - 313 5.1e-44 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 745
AccB7I CCANNNNNTGG 1 cut(s) 39
AciI CCGC 2 cut(s) 136, 311
AclWI GGATC 1 cut(s) 560
AcsI RAATTY 4 cut(s) 61, 165, 320, 790
AfaI GTAC 3 cut(s) 434, 445, 995
AfiI CCNNNNNNNGG 3 cut(s) 39, 685, 946
AgsI TTSAA 3 cut(s) 114, 340, 1031
AhdI GACNNNNNGTC 1 cut(s) 159
AjiI CACGTC 1 cut(s) 904
AluBI AGCT 4 cut(s) 74, 150, 175, 295
AluI AGCT 4 cut(s) 74, 150, 175, 295
Alw26I GTCTC 1 cut(s) 910
AlwI GGATC 1 cut(s) 560
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 1 cut(s) 578
ApoI RAATTY 4 cut(s) 61, 165, 320, 790
AseI ATTAAT 1 cut(s) 753
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 458, 675
AsuC2I CCSGG 1 cut(s) 429
AvaII GGWCC 1 cut(s) 675
BanI GGYRCC 1 cut(s) 745
BanII GRGCYC 2 cut(s) 365, 849
BbsI GAAGAC 1 cut(s) 711
BbvI GCAGC 1 cut(s) 590
BccI CCATC 2 cut(s) 216, 944
BceAI ACGGC 2 cut(s) 463, 927
BciVI GTATCC 1 cut(s) 247
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 910
BfaI CTAG 2 cut(s) 185, 218
BfmI CTRYAG 1 cut(s) 145
BfuI GTATCC 1 cut(s) 247
BisI GCNGC 2 cut(s) 311, 579
BlsI GCNGC 2 cut(s) 312, 580
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 675
BmeRI GACNNNNNGTC 1 cut(s) 159
BmgBI CACGTC 1 cut(s) 904
BmgT120I GGNCC 2 cut(s) 458, 675
BmiI GGNNCC 7 cut(s) 459, 477, 600, 676, 677, 747, 899
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 484
BpiI GAAGAC 1 cut(s) 711
BpmI CTGGAG 1 cut(s) 585
BpuMI CCSGG 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 428, 849
BsaWI WCCGGW 2 cut(s) 472, 894
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 685, 946
Bse1I ACTGG 2 cut(s) 98, 730
BseDI CCNNGG 2 cut(s) 428, 849
BseGI GGATG 3 cut(s) 227, 859, 955
BseLI CCNNNNNNNGG 3 cut(s) 39, 685, 946
BseNI ACTGG 2 cut(s) 98, 730
BseRI GAGGAG 3 cut(s) 39, 291, 294
BseXI GCAGC 1 cut(s) 590
BseYI CCCAGC 1 cut(s) 171
BshFI GGCC 1 cut(s) 460
BshNI GGYRCC 1 cut(s) 745
BsiSI CCGG 3 cut(s) 428, 473, 895
BslFI GGGAC 2 cut(s) 525, 688
BslI CCNNNNNNNGG 3 cut(s) 39, 685, 946
BsmAI GTCTC 1 cut(s) 910
BsmBI CGTCTC 1 cut(s) 910
BsmFI GGGAC 2 cut(s) 525, 688
BsmI GAATGC 2 cut(s) 416, 1018
BsnI GGCC 1 cut(s) 460
Bsp1286I GDGCHC 2 cut(s) 365, 849
Bsp143I GATC 6 cut(s) 44, 51, 120, 259, 558, 565
BspACI CCGC 2 cut(s) 136, 311
BspANI GGCC 1 cut(s) 460
BspLI GGNNCC 7 cut(s) 459, 477, 600, 676, 677, 747, 899
BspPI GGATC 1 cut(s) 560
BspT107I GGYRCC 1 cut(s) 745
BsrI ACTGG 2 cut(s) 98, 730
BssECI CCNNGG 2 cut(s) 428, 849
BssMI GATC 6 cut(s) 44, 51, 120, 259, 558, 565
BssT1I CCWWGG 1 cut(s) 849
Bst4CI ACNGT 2 cut(s) 235, 713
Bst6I CTCTTC 1 cut(s) 626
BstAPI GCANNNNNTGC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 77, 192
BstF5I GGATG 3 cut(s) 227, 859, 955
BstKTI GATC 6 cut(s) 47, 54, 123, 262, 561, 568
BstMAI GTCTC 1 cut(s) 910
BstMBI GATC 6 cut(s) 44, 51, 120, 259, 558, 565
BstMWI GCNNNNNNNGC 2 cut(s) 204, 1024
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 590
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 460
BtgZI GCGATG 1 cut(s) 999
BtrI CACGTC 1 cut(s) 904
BtsCI GGATG 3 cut(s) 227, 859, 955
Cfr13I GGNCC 2 cut(s) 458, 675
Csp6I GTAC 3 cut(s) 433, 444, 994
CviAII CATG 6 cut(s) 39, 281, 391, 447, 768, 1023
CviQI GTAC 3 cut(s) 433, 444, 994
DdeI CTNAG 2 cut(s) 77, 192
DpnI GATC 6 cut(s) 46, 53, 122, 261, 560, 567
DpnII GATC 6 cut(s) 44, 51, 120, 259, 558, 565
DriI GACNNNNNGTC 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 626
Eam1105I GACNNNNNGTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 626
Eco130I CCWWGG 1 cut(s) 849
Eco24I GRGCYC 2 cut(s) 365, 849
Eco47I GGWCC 1 cut(s) 675
EcoO109I RGGNCCY 2 cut(s) 458, 675
EcoT14I CCWWGG 1 cut(s) 849
EcoT38I GRGCYC 2 cut(s) 365, 849
ErhI CCWWGG 1 cut(s) 849
Esp3I CGTCTC 1 cut(s) 910
FaeI CATG 6 cut(s) 42, 284, 394, 450, 771, 1026
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 2 cut(s) 525, 688
FatI CATG 6 cut(s) 38, 280, 390, 446, 767, 1022
FauNDI CATATG 1 cut(s) 942
Fnu4HI GCNGC 2 cut(s) 311, 579
FokI GGATG 3 cut(s) 234, 866, 962
FriOI GRGCYC 2 cut(s) 365, 849
Fsp4HI GCNGC 2 cut(s) 311, 579
FspBI CTAG 2 cut(s) 185, 218
GluI GCNGC 2 cut(s) 311, 579
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 1 cut(s) 585
HaeIII GGCC 1 cut(s) 460
HapII CCGG 3 cut(s) 428, 473, 895
Hin1II CATG 6 cut(s) 42, 284, 394, 450, 771, 1026
HincII GTYRAC 2 cut(s) 231, 276
HindII GTYRAC 2 cut(s) 231, 276
HinfI GANTC 4 cut(s) 451, 607, 662, 857
HpaI GTTAAC 1 cut(s) 276
HpaII CCGG 3 cut(s) 428, 473, 895
Hpy166II GTNNAC 3 cut(s) 231, 276, 529
Hpy188I TCNGA 2 cut(s) 379, 781
Hpy188III TCNNGA 3 cut(s) 602, 611, 838
Hpy8I GTNNAC 3 cut(s) 231, 276, 529
HpyAV CCTTC 3 cut(s) 152, 375, 940
HpyCH4III ACNGT 2 cut(s) 235, 713
HpyCH4IV ACGT 1 cut(s) 903
HpyCH4V TGCA 5 cut(s) 497, 578, 647, 821, 867
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 1024
HpyF3I CTNAG 2 cut(s) 77, 192
HpySE526I ACGT 1 cut(s) 903
Hsp92II CATG 6 cut(s) 42, 284, 394, 450, 771, 1026
KflI GGGWCCC 1 cut(s) 675
KspAI GTTAAC 1 cut(s) 276
Kzo9I GATC 6 cut(s) 44, 51, 120, 259, 558, 565
LmnI GCTCC 3 cut(s) 475, 604, 897
Lsp1109I GCAGC 1 cut(s) 590
LweI GCATC 1 cut(s) 484
MaeI CTAG 2 cut(s) 185, 218
MaeII ACGT 1 cut(s) 903
MaeIII GTNAC 3 cut(s) 332, 691, 718
MalI GATC 6 cut(s) 46, 53, 122, 261, 560, 567
MboI GATC 6 cut(s) 44, 51, 120, 259, 558, 565
MboII GAAGA 7 cut(s) 204, 352, 575, 613, 716, 822, 986
MfeI CAATTG 1 cut(s) 874
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 2 cut(s) 365, 849
MlyI GAGTC 1 cut(s) 445
MnlI CCTC 6 cut(s) 17, 309, 312, 315, 582, 736
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 6 cut(s) 267, 275, 482, 753, 990, 1010
MspI CCGG 3 cut(s) 428, 473, 895
MspR9I CCNGG 1 cut(s) 429
MunI CAATTG 1 cut(s) 874
Mva1269I GAATGC 2 cut(s) 416, 1018
MwoI GCNNNNNNNGC 2 cut(s) 204, 1024
NciI CCSGG 1 cut(s) 429
NdeI CATATG 1 cut(s) 942
NdeII GATC 6 cut(s) 44, 51, 120, 259, 558, 565
NlaIII CATG 6 cut(s) 42, 284, 394, 450, 771, 1026
NlaIV GGNNCC 7 cut(s) 459, 477, 600, 676, 677, 747, 899
NmuCI GTSAC 1 cut(s) 691
PctI GAATGC 2 cut(s) 416, 1018
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 607, 662, 857
PflMI CCANNNNNTGG 1 cut(s) 39
PkrI GCNGC 2 cut(s) 312, 580
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PpuMI RGGWCCY 1 cut(s) 675
PshBI ATTAAT 1 cut(s) 753
Psp5II RGGWCCY 1 cut(s) 675
PspFI CCCAGC 1 cut(s) 171
PspN4I GGNNCC 7 cut(s) 459, 477, 600, 676, 677, 747, 899
PspPI GGNCC 2 cut(s) 458, 675
PspPPI RGGWCCY 1 cut(s) 675
PsuI RGATCY 1 cut(s) 565
RsaI GTAC 3 cut(s) 434, 445, 995
RsaNI GTAC 3 cut(s) 433, 444, 994
SaqAI TTAA 6 cut(s) 267, 275, 482, 753, 990, 1010
SatI GCNGC 2 cut(s) 311, 579
Sau3AI GATC 6 cut(s) 44, 51, 120, 259, 558, 565
Sau96I GGNCC 2 cut(s) 458, 675
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 2 cut(s) 365, 849
SfaNI GCATC 1 cut(s) 484
SfcI CTRYAG 1 cut(s) 145
SinI GGWCC 1 cut(s) 675
SsiI CCGC 2 cut(s) 136, 311
SspI AATATT 1 cut(s) 486
SspMI CTAG 2 cut(s) 185, 218
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 849
TaaI ACNGT 2 cut(s) 235, 713
TaiI ACGT 1 cut(s) 906
TaqI TCGA 4 cut(s) 359, 561, 741, 924
TatI WGTACW 1 cut(s) 993
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 3 cut(s) 607, 662, 857
Tru1I TTAA 6 cut(s) 267, 275, 482, 753, 990, 1010
Tru9I TTAA 6 cut(s) 267, 275, 482, 753, 990, 1010
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 1 cut(s) 578
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 7 cut(s) 17, 626, 756, 822, 959, 996, 1011
TspGWI ACGGA 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 675
VspI ATTAAT 1 cut(s) 753
XapI RAATTY 4 cut(s) 61, 165, 320, 790
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 185, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.