Rw7G014690

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000399
Physical Location & Seq
Forward (+)
14400995 .. 14402062
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G014690.1

Sequence Viewer

Length: 1068 bp
ATGGCTAAGTGGTCAGATCTTCCTGGAGATCTTCTTGTGCCTATCGCCAAACAGATGGTCTTAATAGAAGATTTTTTGGCTTTTGGTAGAGTTTGTAAATCATGGAATTCTGCCGCCACCAAAGAAAACTATACTGGTGGATTCACTCATCAAACTCCGTTGCTTATGCTGGTGGGTATTAGTATTACTGATCCCAGGTTTGCACTTTACAACCTCAAAAAAGGTAGGGTCCTTGATATTAATATTGGATCCTGTCTCTGGTATCGTTCTTCTCTTGGATGGCTCATCCCACAAGAAGATAGGAAATATCTATTGCATCCTTTCAAAGACGAAAAAATTGTGCTGCCACTCTTTTTCAATGGTTCGGAAATAACGAAGTTTGTCTTATCATCTGCTCCTTCTCTGACATCAGATTACATAATCATGGTTGCTACTGATTACCTTAGAGAGTTCGCATTCTGGAGACCAAAAGACGATGCATGGACTATAATATCATCACCAGATCGCTGCTGGATGCCAGATGAAGGAAGATACGATATAGCTTATTATGAAGGACAATTTTATATCGTGGAAAACGACGGCCGTGTCTTGGTTTGTGACATTGAGGACCCTAAGAAAGCAAAAACAAGGGTCGTTGTTTCAGAGATGCCAATTCTACATGAGATTGCCGAGAAATTATACCTGGTAAAATCGGCCGGCGTCTTATTGTTGGTTATCAGTCTTCGGGAACCATACAGAAGCACTAACTGGTTTAGGGTTTTCGAGGTGCCACTTAGTACTGGTAATTGGTCAAACTCAGTGGAGGTAAAGAACTTGGGGAATTGTGCCTTGTTTCTGAGTGAAAATAGTTCTTCATTCTCTATACGGGTCTCAGACTACTCTGCTTTGAAGGCCAATTGCATATACCACGCAGGTACGTGTTTGGGTGTTTTTAGCATGGAAGATGGAAAGATGGAGCAAACATATTTTTATTATTATGAATTTTTTGATTCAAAACAACCATATGCATGGATTCAACAGTATGGATACAGCGGTGTTTCTATGGAGAATGGACTCACCCTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

355

Amino Acids

40.66

Weight (kDa)

5.42

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 70 - 304 3.5e-45 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 584
Acc36I ACCTGC 1 cut(s) 902
AccB1I GGYRCC 1 cut(s) 766
AciI CCGC 2 cut(s) 114, 1032
AclWI GGATC 3 cut(s) 185, 243, 256
AcoI YGGCCR 2 cut(s) 580, 693
AcsI RAATTY 2 cut(s) 106, 980
AcyI GRCGYC 1 cut(s) 699
AfaI GTAC 2 cut(s) 778, 916
AfiI CCNNNNNNNGG 3 cut(s) 258, 524, 589
AflIII ACRYGT 1 cut(s) 917
AgsI TTSAA 5 cut(s) 325, 358, 889, 993, 1016
AjnI CCWGG 3 cut(s) 22, 194, 681
AluBI AGCT 1 cut(s) 542
AluI AGCT 1 cut(s) 542
Alw26I GTCTC 3 cut(s) 260, 457, 874
AlwI GGATC 3 cut(s) 185, 243, 256
AoxI GGCC 3 cut(s) 580, 693, 891
ApeKI GCWGC 2 cut(s) 343, 507
ApoI RAATTY 2 cut(s) 106, 980
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AseI ATTAAT 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 229, 607
AsuHPI GGTGA 3 cut(s) 489, 1048, 1054
AvaII GGWCC 2 cut(s) 229, 607
BaeI ACNNNNGTAYC 2 cut(s) 1018, 1051
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 766
BbsI GAAGAC 1 cut(s) 713
BbvI GCAGC 2 cut(s) 330, 494
BccI CCATC 4 cut(s) 49, 273, 938, 946
BceAI ACGGC 2 cut(s) 567, 595
BciT130I CCWGG 3 cut(s) 24, 196, 683
BciVI GTATCC 1 cut(s) 1019
BcoDI GTCTC 3 cut(s) 260, 457, 874
BfuAI ACCTGC 1 cut(s) 902
BfuI GTATCC 1 cut(s) 1019
BglII AGATCT 2 cut(s) 16, 28
BisI GCNGC 3 cut(s) 114, 344, 508
BlsI GCNGC 3 cut(s) 115, 345, 509
BmcAI AGTACT 1 cut(s) 778
Bme1390I CCNGG 3 cut(s) 24, 196, 683
Bme18I GGWCC 2 cut(s) 229, 607
BmgT120I GGNCC 2 cut(s) 229, 607
BmiI GGNNCC 5 cut(s) 230, 250, 609, 729, 768
BmrFI CCNGG 3 cut(s) 24, 196, 683
BmsI GCATC 4 cut(s) 325, 466, 504, 636
BpiI GAAGAC 1 cut(s) 713
BpmI CTGGAG 2 cut(s) 45, 481
BsaAI YACGTR 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 699
BsaI GGTCTC 2 cut(s) 457, 874
BsaJI CCNNGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 524, 589
Bse118I RCCGGY 1 cut(s) 695
Bse1I ACTGG 3 cut(s) 139, 752, 784
BseBI CCWGG 3 cut(s) 24, 196, 683
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 4 cut(s) 284, 285, 316, 519
BseLI CCNNNNNNNGG 3 cut(s) 258, 524, 589
BseMII CTCAG 3 cut(s) 810, 827, 885
BseNI ACTGG 3 cut(s) 139, 752, 784
BseX3I CGGCCG 2 cut(s) 580, 693
BseXI GCAGC 2 cut(s) 330, 494
Bsh1285I CGRYCG 2 cut(s) 583, 696
BshFI GGCC 3 cut(s) 582, 695, 893
BshNI GGYRCC 1 cut(s) 766
BsiEI CGRYCG 2 cut(s) 583, 696
BsiSI CCGG 1 cut(s) 696
BslI CCNNNNNNNGG 3 cut(s) 258, 524, 589
BsmAI GTCTC 3 cut(s) 260, 457, 874
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 3 cut(s) 582, 695, 893
Bso31I GGTCTC 2 cut(s) 457, 874
Bsp143I GATC 5 cut(s) 16, 28, 190, 248, 502
BspACI CCGC 2 cut(s) 114, 1032
BspANI GGCC 3 cut(s) 582, 695, 893
BspCNI CTCAG 3 cut(s) 809, 828, 884
BspLI GGNNCC 5 cut(s) 230, 250, 609, 729, 768
BspMI ACCTGC 1 cut(s) 902
BspPI GGATC 3 cut(s) 185, 243, 256
BspT107I GGYRCC 1 cut(s) 766
BspTNI GGTCTC 2 cut(s) 457, 874
BsrFI RCCGGY 1 cut(s) 695
BsrI ACTGG 3 cut(s) 139, 752, 784
BssAI RCCGGY 1 cut(s) 695
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 5 cut(s) 16, 28, 190, 248, 502
BssNI GRCGYC 1 cut(s) 699
Bst2UI CCWGG 3 cut(s) 24, 196, 683
Bst4CI ACNGT 1 cut(s) 1020
BstACI GRCGYC 1 cut(s) 699
BstBAI YACGTR 1 cut(s) 918
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 7 cut(s) 6, 443, 612, 773, 796, 836, 871
BstF5I GGATG 4 cut(s) 284, 285, 316, 519
BstKTI GATC 5 cut(s) 19, 31, 193, 251, 505
BstMAI GTCTC 3 cut(s) 260, 457, 874
BstMBI GATC 5 cut(s) 16, 28, 190, 248, 502
BstMCI CGRYCG 2 cut(s) 583, 696
BstMWI GCNNNNNNNGC 1 cut(s) 890
BstNI CCWGG 3 cut(s) 24, 196, 683
BstSCI CCNGG 3 cut(s) 22, 194, 681
BstV1I GCAGC 2 cut(s) 330, 494
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 3 cut(s) 16, 28, 248
BstXI CCANNNNNNTGG 2 cut(s) 55, 1008
BstYI RGATCY 3 cut(s) 16, 28, 248
BstZI CGGCCG 2 cut(s) 580, 693
BsuI GTATCC 1 cut(s) 1019
BsuRI GGCC 3 cut(s) 582, 695, 893
BtsCI GGATG 4 cut(s) 284, 285, 316, 519
BtsIMutI CAGTG 1 cut(s) 804
BveI ACCTGC 1 cut(s) 902
Cac8I GCNNGC 1 cut(s) 697
Cfr10I RCCGGY 1 cut(s) 695
Cfr13I GGNCC 2 cut(s) 229, 607
CseI GACGC 1 cut(s) 688
CsiI ACCWGGT 1 cut(s) 681
Csp6I GTAC 2 cut(s) 777, 915
CspCI CAANNNNNGTGG 2 cut(s) 780, 815
CviAII CATG 6 cut(s) 102, 424, 480, 659, 937, 1008
CviJI RGCY 7 cut(s) 5, 80, 283, 542, 582, 695, 893
CviKI_1 RGCY 7 cut(s) 5, 80, 283, 542, 582, 695, 893
CviQI GTAC 2 cut(s) 777, 915
DdeI CTNAG 7 cut(s) 6, 443, 612, 773, 796, 836, 871
DpnI GATC 5 cut(s) 18, 30, 192, 250, 504
DpnII GATC 5 cut(s) 16, 28, 190, 248, 502
DrdI GACNNNNNNGTC 1 cut(s) 584
DseDI GACNNNNNNGTC 1 cut(s) 584
EaeI YGGCCR 2 cut(s) 580, 693
EagI CGGCCG 2 cut(s) 580, 693
EclXI CGGCCG 2 cut(s) 580, 693
Eco31I GGTCTC 2 cut(s) 457, 874
Eco47I GGWCC 2 cut(s) 229, 607
Eco52I CGGCCG 2 cut(s) 580, 693
EcoO109I RGGNCCY 2 cut(s) 229, 607
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 3 cut(s) 22, 194, 681
EcoT22I ATGCAT 2 cut(s) 481, 1009
FaeI CATG 6 cut(s) 105, 427, 483, 662, 940, 1011
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FatI CATG 6 cut(s) 101, 423, 479, 658, 936, 1007
FauNDI CATATG 1 cut(s) 1003
Fnu4HI GCNGC 3 cut(s) 114, 344, 508
FokI GGATG 4 cut(s) 272, 291, 303, 526
Fsp4HI GCNGC 3 cut(s) 114, 344, 508
GluI GCNGC 3 cut(s) 114, 344, 508
GsuI CTGGAG 2 cut(s) 45, 481
HaeIII GGCC 3 cut(s) 582, 695, 893
HapII CCGG 1 cut(s) 696
HgaI GACGC 1 cut(s) 688
Hin1I GRCGYC 1 cut(s) 699
Hin1II CATG 6 cut(s) 105, 427, 483, 662, 940, 1011
HinfI GANTC 4 cut(s) 141, 989, 1012, 1053
HpaII CCGG 1 cut(s) 696
HphI GGTGA 3 cut(s) 489, 1048, 1054
Hpy188I TCNGA 7 cut(s) 16, 367, 405, 412, 643, 837, 874
Hpy188III TCNNGA 2 cut(s) 460, 725
Hpy99I CGWCG 1 cut(s) 581
HpyAV CCTTC 4 cut(s) 408, 518, 545, 883
HpyCH4III ACNGT 1 cut(s) 1020
HpyCH4IV ACGT 1 cut(s) 917
HpyCH4V TGCA 5 cut(s) 203, 316, 479, 900, 1007
HpyF10VI GCNNNNNNNGC 1 cut(s) 890
HpyF3I CTNAG 7 cut(s) 6, 443, 612, 773, 796, 836, 871
HpySE526I ACGT 1 cut(s) 917
Hsp92I GRCGYC 1 cut(s) 699
Hsp92II CATG 6 cut(s) 105, 427, 483, 662, 940, 1011
KroI GCCGGC 1 cut(s) 695
KroNI GCCGGC 1 cut(s) 697
Kzo9I GATC 5 cut(s) 16, 28, 190, 248, 502
LmnI GCTCC 2 cut(s) 400, 955
Lsp1109I GCAGC 2 cut(s) 330, 494
LweI GCATC 4 cut(s) 325, 466, 504, 636
MabI ACCWGGT 1 cut(s) 681
MaeII ACGT 1 cut(s) 917
MaeIII GTNAC 1 cut(s) 596
MalI GATC 5 cut(s) 18, 30, 192, 250, 504
MboI GATC 5 cut(s) 16, 28, 190, 248, 502
MboII GAAGA 9 cut(s) 11, 23, 80, 261, 308, 540, 713, 843, 953
MfeI CAATTG 1 cut(s) 895
MflI RGATCY 3 cut(s) 16, 28, 248
MluCI AATT 9 cut(s) 106, 336, 557, 651, 674, 784, 820, 895, 980
MlyI GAGTC 1 cut(s) 1047
MnlI CCTC 4 cut(s) 224, 598, 757, 796
Mph1103I ATGCAT 2 cut(s) 481, 1009
MroNI GCCGGC 1 cut(s) 695
MseI TTAA 2 cut(s) 62, 240
MslI CAYNNNNRTG 2 cut(s) 422, 1006
MspA1I CMGCKG 1 cut(s) 1032
MspI CCGG 1 cut(s) 696
MspR9I CCNGG 3 cut(s) 24, 196, 683
MunI CAATTG 1 cut(s) 895
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 3 cut(s) 24, 196, 683
MwoI GCNNNNNNNGC 1 cut(s) 890
NaeI GCCGGC 1 cut(s) 697
NdeI CATATG 1 cut(s) 1003
NdeII GATC 5 cut(s) 16, 28, 190, 248, 502
NgoMIV GCCGGC 1 cut(s) 695
NlaIII CATG 6 cut(s) 105, 427, 483, 662, 940, 1011
NlaIV GGNNCC 5 cut(s) 230, 250, 609, 729, 768
NmeAIII GCCGAG 1 cut(s) 694
NmuCI GTSAC 1 cut(s) 596
NsiI ATGCAT 2 cut(s) 481, 1009
PcsI WCGNNNNNNNCGW 2 cut(s) 371, 573
PctI GAATGC 1 cut(s) 455
PdiI GCCGGC 1 cut(s) 697
PfeI GAWTC 3 cut(s) 141, 989, 1012
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 3 cut(s) 115, 345, 509
PleI GAGTC 1 cut(s) 1047
PpsI GAGTC 1 cut(s) 1047
Ppu21I YACGTR 1 cut(s) 918
PpuMI RGGWCCY 2 cut(s) 229, 607
PshBI ATTAAT 1 cut(s) 240
Psp5II RGGWCCY 2 cut(s) 229, 607
Psp6I CCWGG 3 cut(s) 22, 194, 681
PspGI CCWGG 3 cut(s) 22, 194, 681
PspN4I GGNNCC 5 cut(s) 230, 250, 609, 729, 768
PspPI GGNCC 2 cut(s) 229, 607
PspPPI RGGWCCY 2 cut(s) 229, 607
PsuI RGATCY 3 cut(s) 16, 28, 248
RsaI GTAC 2 cut(s) 778, 916
RsaNI GTAC 2 cut(s) 777, 915
RseI CAYNNNNRTG 2 cut(s) 422, 1006
SaqAI TTAA 2 cut(s) 62, 240
SatI GCNGC 3 cut(s) 114, 344, 508
Sau3AI GATC 5 cut(s) 16, 28, 190, 248, 502
Sau96I GGNCC 2 cut(s) 229, 607
ScaI AGTACT 1 cut(s) 778
SchI GAGTC 1 cut(s) 1047
ScrFI CCNGG 3 cut(s) 24, 196, 683
SexAI ACCWGGT 1 cut(s) 681
SfaNI GCATC 4 cut(s) 325, 466, 504, 636
SinI GGWCC 2 cut(s) 229, 607
SmiMI CAYNNNNRTG 2 cut(s) 422, 1006
Sse9I AATT 9 cut(s) 106, 336, 557, 651, 674, 784, 820, 895, 980
SsiI CCGC 2 cut(s) 114, 1032
SspI AATATT 1 cut(s) 244
StyD4I CCNGG 3 cut(s) 22, 194, 681
TaaI ACNGT 1 cut(s) 1020
TaiI ACGT 1 cut(s) 920
TaqI TCGA 1 cut(s) 762
TasI AATT 9 cut(s) 106, 336, 557, 651, 674, 784, 820, 895, 980
TatI WGTACW 1 cut(s) 776
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 3 cut(s) 141, 989, 1012
Tru1I TTAA 2 cut(s) 62, 240
Tru9I TTAA 2 cut(s) 62, 240
TscAI CASTG 1 cut(s) 804
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 2 cut(s) 343, 507
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 4 cut(s) 537, 564, 843, 993
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 1 cut(s) 804
VpaK11BI GGWCC 2 cut(s) 229, 607
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 2 cut(s) 106, 980
XcmI CCANNNNNNNNNTGG 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 778
Zsp2I ATGCAT 2 cut(s) 481, 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.