Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Forward (+)

33950905 .. 33954048

Gene Structure 3144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0213400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTCGAGGAGGAAGAGGAGGACGACGACGATGATGAATACGGCCCCTATCGTGGCGGCAGCGGCGGGAGTCGTAAGCGGAGCAAGAAGAGGCCTTCTGGTACCAATATTCAGATGAACGAAGAGGTTGCGATTAAGCTGCAAAAGTATGGCACACCAAAACAGGATGCACTTAGAAGGGATCTAACTATTAACAGCTTATTTTATAATATCAATACCAAATCCATTGAAGATTGGACTAATAGAGCTGCAAGGTTCGGATTCATACTCGATGAACAACTAAAGGAAGCTGCTGCCTGTGATGAAGTGAAAGCTGCTCTATCAGCTAAAATTAGCAGAGAGCGAATTGGAGCTGAAATTGATCTGATGATCTCCGGAAACCAACCTGCCCAAGCTATGACCTATATATGTGACTTGAAGTTATTTTGGGTTGTCTTCAGTCTTCATCCACAGTGTGAGCCATCAGAAGGATGTGACAGCGATTGTGTTGCGTACTTGGATTTTACTTGGAATCTTATTCAATTAGTGGGGCACTCTACCTTCAATGACGAACAAAGAAGGCTCTCCTTTTATGCTGCAATGTTCCTTCCACTTAGGAAGACTATGTATAAAGATAGGAAAGCAAAAGATATCGATGTGGTATGTGGGAACAGCTTGATTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

221

Amino Acids

25.16

Weight (kDa)

5.0

Isoelectric Point (pI)

56.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	45 - 81	1.2e-07	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	394
Acc65I	GGTACC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	374
AciI	CCGC	4 cut(s)	57, 63, 66, 79
AclWI	GGATC	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	421
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	2 cut(s)	103, 494
AfiI	CCNNNNNNNGG	2 cut(s)	53, 467
AgsI	TTSAA	4 cut(s)	230, 418, 521, 544
AluBI	AGCT	9 cut(s)	139, 198, 248, 290, 314, 326, 353, 395, 654
AluI	AGCT	9 cut(s)	139, 198, 248, 290, 314, 326, 353, 395, 654
AlwI	GGATC	1 cut(s)	189
Aor13HI	TCCGGA	1 cut(s)	374
AoxI	GGCC	2 cut(s)	43, 92
ApeKI	GCWGC	7 cut(s)	60, 139, 248, 290, 293, 314, 575
Asp718I	GGTACC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	534
BanI	GGYRCC	1 cut(s)	101
BbsI	GAAGAC	3 cut(s)	427, 434, 605
BbvI	GCAGC	7 cut(s)	72, 126, 235, 277, 280, 301, 562
BccI	CCATC	1 cut(s)	469
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	6 cut(s)	110, 121, 144, 155, 470, 504
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	9 cut(s)	58, 61, 64, 140, 249, 291, 294, 315, 576
BlsI	GCNGC	9 cut(s)	59, 62, 65, 141, 250, 292, 295, 316, 577
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	46, 103
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	3 cut(s)	427, 434, 605
Bsa29I	ATCGAT	1 cut(s)	633
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 467
Bse3DI	GCAATG	1 cut(s)	585
BseAI	TCCGGA	1 cut(s)	374
BseCI	ATCGAT	1 cut(s)	633
BseGI	GGATG	3 cut(s)	172, 445, 476
BseLI	CCNNNNNNNGG	2 cut(s)	53, 467
BseMI	GCAATG	1 cut(s)	585
BseRI	GAGGAG	2 cut(s)	23, 32
BseSI	GKGCMC	1 cut(s)	534
BseXI	GCAGC	7 cut(s)	72, 126, 235, 277, 280, 301, 562
BshFI	GGCC	2 cut(s)	45, 94
BshNI	GGYRCC	1 cut(s)	101
BshVI	ATCGAT	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	53, 467
BsnI	GGCC	2 cut(s)	45, 94
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp13I	TCCGGA	1 cut(s)	374
Bsp143I	GATC	3 cut(s)	181, 361, 369
BspACI	CCGC	4 cut(s)	57, 63, 66, 79
BspANI	GGCC	2 cut(s)	45, 94
BspDI	ATCGAT	1 cut(s)	633
BspEI	TCCGGA	1 cut(s)	374
BspLI	GGNNCC	2 cut(s)	46, 103
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	585
BssMI	GATC	3 cut(s)	181, 361, 369
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	3 cut(s)	9, 83, 117
BstDEI	CTNAG	2 cut(s)	173, 593
BstF5I	GGATG	3 cut(s)	172, 445, 476
BstKTI	GATC	3 cut(s)	184, 364, 372
BstMBI	GATC	3 cut(s)	181, 361, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 323
BstSLI	GKGCMC	1 cut(s)	534
BstV1I	GCAGC	7 cut(s)	72, 126, 235, 277, 280, 301, 562
BstV2I	GAAGAC	3 cut(s)	427, 434, 605
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	633
BsuRI	GGCC	2 cut(s)	45, 94
BsuTUI	ATCGAT	1 cut(s)	633
BtsCI	GGATG	3 cut(s)	172, 445, 476
BtsIMutI	CAGTG	1 cut(s)	458
BveI	ACCTGC	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	1 cut(s)	633
Csp6I	GTAC	2 cut(s)	102, 493
CviQI	GTAC	2 cut(s)	102, 493
DdeI	CTNAG	2 cut(s)	173, 593
DpnI	GATC	3 cut(s)	183, 363, 371
DpnII	GATC	3 cut(s)	181, 361, 369
DraIII	CACNNNGTG	1 cut(s)	455
Eam1104I	CTCTTC	3 cut(s)	9, 83, 117
EarI	CTCTTC	3 cut(s)	9, 83, 117
Eco147I	AGGCCT	1 cut(s)	94
Eco32I	GATATC	1 cut(s)	631
Eco57I	CTGAAG	1 cut(s)	421
EcoRV	GATATC	1 cut(s)	631
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	9 cut(s)	58, 61, 64, 140, 249, 291, 294, 315, 576
FokI	GGATG	3 cut(s)	179, 432, 483
Fsp4HI	GCNGC	9 cut(s)	58, 61, 64, 140, 249, 291, 294, 315, 576
GluI	GCNGC	9 cut(s)	58, 61, 64, 140, 249, 291, 294, 315, 576
HaeIII	GGCC	2 cut(s)	45, 94
HapII	CCGG	1 cut(s)	375
HinfI	GANTC	3 cut(s)	70, 261, 511
HpaII	CCGG	1 cut(s)	375
Hpy188I	TCNGA	4 cut(s)	114, 260, 366, 466
Hpy188III	TCNNGA	1 cut(s)	375
Hpy99I	CGWCG	2 cut(s)	29, 32
HpyAV	CCTTC	6 cut(s)	105, 171, 461, 550, 552, 596
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4V	TGCA	4 cut(s)	142, 170, 251, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 323
HpyF3I	CTNAG	2 cut(s)	173, 593
Kpn2I	TCCGGA	1 cut(s)	374
KpnI	GGTACC	1 cut(s)	105
Kzo9I	GATC	3 cut(s)	181, 361, 369
LmnI	GCTCC	2 cut(s)	81, 350
LpnPI	CCDG	5 cut(s)	84, 149, 310, 388, 399
Lsp1109I	GCAGC	7 cut(s)	72, 126, 235, 277, 280, 301, 562
LweI	GCATC	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	410, 473
MalI	GATC	3 cut(s)	183, 363, 371
MboI	GATC	3 cut(s)	181, 361, 369
MboII	GAAGA	7 cut(s)	26, 100, 134, 242, 427, 434, 610
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	4 cut(s)	330, 345, 357, 521
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	5 cut(s)	4, 10, 13, 84, 118
MroI	TCCGGA	1 cut(s)	374
MseI	TTAA	2 cut(s)	135, 192
MspA1I	CMGCKG	1 cut(s)	63
MspI	CCGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	63, 323
NdeII	GATC	3 cut(s)	181, 361, 369
NlaIV	GGNNCC	2 cut(s)	46, 103
NmuCI	GTSAC	2 cut(s)	410, 473
PceI	AGGCCT	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	261, 511
PkrI	GCNGC	9 cut(s)	59, 62, 65, 141, 250, 292, 295, 316, 577
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
PsiI	TTATAA	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	46, 103
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	2 cut(s)	103, 494
RsaNI	GTAC	2 cut(s)	102, 493
SaqAI	TTAA	2 cut(s)	135, 192
SatI	GCNGC	9 cut(s)	58, 61, 64, 140, 249, 291, 294, 315, 576
Sau3AI	GATC	3 cut(s)	181, 361, 369
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	1 cut(s)	157
Sse9I	AATT	4 cut(s)	330, 345, 357, 521
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	4 cut(s)	57, 63, 66, 79
SspI	AATATT	1 cut(s)	109
StuI	AGGCCT	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	3 cut(s)	6, 270, 633
TasI	AATT	4 cut(s)	330, 345, 357, 521
TauI	GCSGC	2 cut(s)	60, 66
TfiI	GAWTC	2 cut(s)	261, 511
Tru1I	TTAA	2 cut(s)	135, 192
Tru9I	TTAA	2 cut(s)	135, 192
TscAI	CASTG	1 cut(s)	458
TseFI	GTSAC	2 cut(s)	410, 473
TseI	GCWGC	7 cut(s)	60, 139, 248, 290, 293, 314, 575
Tsp45I	GTSAC	2 cut(s)	410, 473
TspDTI	ATGAA	6 cut(s)	51, 131, 253, 288, 318, 434
TspRI	CASTG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.