Rmu_sc0006266.1_g000019

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006266.1
OG0000399
Physical Location & Seq
Forward (+)
45918 .. 49256
3339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006266.1_g000019.1.cds

Sequence Viewer

Length: 975 bp
atgcattctcagattcagttgccagatattgacagaattaaatgggacgacgggaacggccagtattttattatgaaaaagtttgtctcaacatcaagtccttcttggacatctgattacataatcatggtacttggtaaacacagaacattagtattttgcagaccaggagacaatcaatggacatccatcaatacaagtaagcgcaggatgtactgggatgacataactcactataagggaaagttttacgtggtaggaggttatggcaccatctttgtttgtgacattgaagaccctcagcaaccaaaacttaagagggacttattggtggtttcgcgttttaatggtgatatgtataatctaacggctttcaaggtgccattgagtaatggcatgtggtcagactcattagagcctaaattagatagcccactagggcagcccaaagagaagaggcccaaactcaaggcccagcagggcatggttgacctcggcccaaaccacccctctaccacgcctgcagccgcctgtgcagcgccgcctacgagtccggccccgaaactagtctcaccacgatccgcgttgttgaactccgccagaagccagcactactccgagtccccaagccaatgccatgcagcgcctaaacccgagacccgcatgccgcacagttgtctagacccgaacttcacaagccgtaccgtcgccagatcgagccttaagatctcctccgcccccagctcgagcagtccctgcacagaaaaccaccacaaatgccagaaaaaccagctaacctgcatccaaacagcctgccaaaccatagccgaacaacttctcccccaatctcaacccagggcattgaagcgctcgtccggcagtcagcctagtgacgccgtagagaagccggcgctatccatggcagccgccggacggggaactgtttggtggtgttttcctctcctgcggctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

324

Amino Acids

35.97

Weight (kDa)

9.39

Isoelectric Point (pI)

66.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 806
AccB1I GGYRCC 2 cut(s) 269, 379
AccII CGCG 2 cut(s) 340, 584
AciI CCGC 9 cut(s) 528, 542, 582, 597, 661, 668, 735, 927, 967
AclWI GGATC 1 cut(s) 573
AcoI YGGCCR 1 cut(s) 58
AcyI GRCGYC 1 cut(s) 894
AfaI GTAC 3 cut(s) 132, 215, 703
AfeI AGCGCT 1 cut(s) 869
AfiI CCNNNNNNNGG 1 cut(s) 933
AflII CTTAAG 2 cut(s) 314, 722
AgsI TTSAA 4 cut(s) 293, 376, 592, 865
AhlI ACTAGT 1 cut(s) 565
AjnI CCWGG 2 cut(s) 166, 854
AloI GAACNNNNNNTCC 2 cut(s) 822, 854
AluBI AGCT 2 cut(s) 744, 793
AluI AGCT 2 cut(s) 744, 793
Alw26I GTCTC 4 cut(s) 91, 165, 574, 650
AlwI GGATC 1 cut(s) 573
AlwNI CAGNNNCTG 1 cut(s) 756
Ama87I CYCGRG 2 cut(s) 653, 745
Aor51HI AGCGCT 1 cut(s) 869
AoxI GGCC 5 cut(s) 58, 458, 471, 496, 555
ApeKI GCWGC 5 cut(s) 442, 524, 536, 641, 923
Asp700I GAANNNNTTC 1 cut(s) 834
AspLEI GCGC 5 cut(s) 207, 541, 646, 870, 913
AspS9I GGNCC 4 cut(s) 459, 472, 497, 556
AsuHPI GGTGA 2 cut(s) 362, 564
AvaI CYCGRG 2 cut(s) 653, 745
BanI GGYRCC 2 cut(s) 269, 379
BbsI GAAGAC 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 5 cut(s) 454, 536, 548, 653, 935
BccI CCATC 2 cut(s) 197, 281
BceAI ACGGC 4 cut(s) 73, 384, 684, 881
BciT130I CCWGG 2 cut(s) 168, 856
BcoDI GTCTC 4 cut(s) 91, 165, 574, 650
BcuI ACTAGT 1 cut(s) 565
BfaI CTAG 5 cut(s) 437, 566, 680, 888, 973
BfmI CTRYAG 1 cut(s) 522
BfoI RGCGCY 4 cut(s) 542, 647, 871, 914
BfrI CTTAAG 2 cut(s) 314, 722
BfuAI ACCTGC 1 cut(s) 806
BglII AGATCT 1 cut(s) 726
Bme1390I CCNGG 2 cut(s) 168, 856
BmeT110I CYCGRG 2 cut(s) 653, 745
BmgT120I GGNCC 4 cut(s) 459, 472, 497, 556
BmiI GGNNCC 3 cut(s) 271, 381, 558
BmrFI CCNGG 2 cut(s) 168, 856
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 810
BmuI ACTGGG 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 452
BsaAI YACGTR 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 894
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 4 cut(s) 493, 854, 855, 918
BsaXI ACNNNNNCTCC 2 cut(s) 822, 852
Bsc4I CCNNNNNNNGG 1 cut(s) 933
Bse118I RCCGGY 1 cut(s) 907
Bse1I ACTGG 2 cut(s) 61, 221
BseBI CCWGG 2 cut(s) 168, 856
BseDI CCNNGG 4 cut(s) 493, 854, 855, 918
BseGI GGATG 4 cut(s) 185, 216, 226, 801
BseLI CCNNNNNNNGG 1 cut(s) 933
BseMII CTCAG 2 cut(s) 23, 314
BseNI ACTGG 2 cut(s) 61, 221
BseRI GAGGAG 1 cut(s) 721
BseXI GCAGC 5 cut(s) 454, 536, 548, 653, 935
BseYI CCCAGC 2 cut(s) 474, 740
BsgI GTGCAG 2 cut(s) 555, 742
Bsh1236I CGCG 2 cut(s) 340, 584
BshFI GGCC 5 cut(s) 60, 460, 473, 498, 557
BshNI GGYRCC 2 cut(s) 269, 379
BsiHKCI CYCGRG 2 cut(s) 653, 745
BsiSI CCGG 4 cut(s) 554, 876, 908, 930
BslFI GGGAC 4 cut(s) 59, 335, 607, 738
BslI CCNNNNNNNGG 1 cut(s) 933
BsmAI GTCTC 4 cut(s) 91, 165, 574, 650
BsmFI GGGAC 4 cut(s) 59, 335, 607, 738
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 5 cut(s) 60, 460, 473, 498, 557
Bso31I GGTCTC 1 cut(s) 650
BsoBI CYCGRG 2 cut(s) 653, 745
Bsp143I GATC 3 cut(s) 578, 713, 726
Bsp19I CCATGG 1 cut(s) 918
BspACI CCGC 9 cut(s) 528, 542, 582, 597, 661, 668, 735, 927, 967
BspANI GGCC 5 cut(s) 60, 460, 473, 498, 557
BspCNI CTCAG 2 cut(s) 22, 313
BspFNI CGCG 2 cut(s) 340, 584
BspLI GGNNCC 3 cut(s) 271, 381, 558
BspMAI CTGCAG 1 cut(s) 526
BspMI ACCTGC 1 cut(s) 806
BspPI GGATC 1 cut(s) 573
BspT107I GGYRCC 2 cut(s) 269, 379
BspTI CTTAAG 2 cut(s) 314, 722
BspTNI GGTCTC 1 cut(s) 650
BsrFI RCCGGY 1 cut(s) 907
BsrI ACTGG 2 cut(s) 61, 221
BssAI RCCGGY 1 cut(s) 907
BssECI CCNNGG 4 cut(s) 493, 854, 855, 918
BssMI GATC 3 cut(s) 578, 713, 726
BssNI GRCGYC 1 cut(s) 894
BssT1I CCWWGG 1 cut(s) 918
Bst2UI CCWGG 2 cut(s) 168, 856
Bst4CI ACNGT 3 cut(s) 674, 706, 943
Bst6I CTCTTC 1 cut(s) 449
BstACI GRCGYC 1 cut(s) 894
BstAFI CTTAAG 2 cut(s) 314, 722
BstAPI GCANNNNNTGC 1 cut(s) 756
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 5 cut(s) 522, 608, 665, 814, 909
BstDEI CTNAG 2 cut(s) 9, 300
BstDSI CCRYGG 1 cut(s) 918
BstF5I GGATG 4 cut(s) 185, 216, 226, 801
BstFNI CGCG 2 cut(s) 340, 584
BstH2I RGCGCY 4 cut(s) 542, 647, 871, 914
BstHHI GCGC 5 cut(s) 207, 541, 646, 870, 913
BstKTI GATC 3 cut(s) 581, 716, 729
BstMAI GTCTC 4 cut(s) 91, 165, 574, 650
BstMBI GATC 3 cut(s) 578, 713, 726
BstMWI GCNNNNNNNGC 4 cut(s) 533, 536, 756, 876
BstNI CCWGG 2 cut(s) 168, 856
BstNSI RCATGY 2 cut(s) 400, 667
BstSCI CCNGG 2 cut(s) 166, 854
BstSFI CTRYAG 1 cut(s) 522
BstUI CGCG 2 cut(s) 340, 584
BstV1I GCAGC 5 cut(s) 454, 536, 548, 653, 935
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 726
BstYI RGATCY 1 cut(s) 726
BsuRI GGCC 5 cut(s) 60, 460, 473, 498, 557
BtgI CCRYGG 1 cut(s) 918
BtsCI GGATG 4 cut(s) 185, 216, 226, 801
BveI ACCTGC 1 cut(s) 806
Cac8I GCNNGC 5 cut(s) 522, 608, 665, 814, 909
CaiI CAGNNNCTG 1 cut(s) 756
CfoI GCGC 5 cut(s) 207, 541, 646, 870, 913
Cfr10I RCCGGY 1 cut(s) 907
Cfr13I GGNCC 4 cut(s) 459, 472, 497, 556
CseI GACGC 1 cut(s) 902
Csp6I GTAC 3 cut(s) 131, 214, 702
CviAII CATG 6 cut(s) 127, 397, 484, 638, 664, 919
CviQI GTAC 3 cut(s) 131, 214, 702
DdeI CTNAG 2 cut(s) 9, 300
DpnI GATC 3 cut(s) 580, 715, 728
DpnII GATC 3 cut(s) 578, 713, 726
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
EciI GGCGGA 2 cut(s) 586, 724
Eco130I CCWWGG 1 cut(s) 918
Eco31I GGTCTC 1 cut(s) 650
Eco47III AGCGCT 1 cut(s) 869
Eco88I CYCGRG 2 cut(s) 653, 745
EcoRII CCWGG 2 cut(s) 166, 854
EcoT14I CCWWGG 1 cut(s) 918
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 918
FaeI CATG 6 cut(s) 130, 400, 487, 641, 667, 922
FalI AAGNNNNNCTT 4 cut(s) 88, 120, 308, 340
FaqI GGGAC 4 cut(s) 59, 335, 607, 738
FatI CATG 6 cut(s) 126, 396, 483, 637, 663, 918
FauI CCCGC 1 cut(s) 668
FokI GGATG 4 cut(s) 172, 223, 233, 788
FspBI CTAG 5 cut(s) 437, 566, 680, 888, 973
GlaI GCGC 5 cut(s) 206, 540, 645, 869, 912
GsaI CCCAGC 2 cut(s) 478, 744
HaeII RGCGCY 4 cut(s) 542, 647, 871, 914
HaeIII GGCC 5 cut(s) 60, 460, 473, 498, 557
HapII CCGG 4 cut(s) 554, 876, 908, 930
HgaI GACGC 1 cut(s) 902
HhaI GCGC 5 cut(s) 207, 541, 646, 870, 913
Hin1I GRCGYC 1 cut(s) 894
Hin1II CATG 6 cut(s) 130, 400, 487, 641, 667, 922
Hin6I GCGC 5 cut(s) 205, 539, 644, 868, 911
HinP1I GCGC 5 cut(s) 205, 539, 644, 868, 911
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HinfI GANTC 4 cut(s) 13, 407, 550, 620
HpaII CCGG 4 cut(s) 554, 876, 908, 930
HphI GGTGA 2 cut(s) 362, 564
Hpy166II GTNNAC 2 cut(s) 140, 490
Hpy188I TCNGA 4 cut(s) 12, 115, 406, 619
Hpy188III TCNNGA 1 cut(s) 680
Hpy8I GTNNAC 2 cut(s) 140, 490
Hpy99I CGWCG 2 cut(s) 53, 710
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 3 cut(s) 674, 706, 943
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 7 cut(s) 4, 162, 524, 536, 641, 759, 801
HpyF10VI GCNNNNNNNGC 4 cut(s) 533, 536, 756, 876
HpyF3I CTNAG 2 cut(s) 9, 300
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 894
Hsp92II CATG 6 cut(s) 130, 400, 487, 641, 667, 922
HspAI GCGC 5 cut(s) 205, 539, 644, 868, 911
KroI GCCGGC 1 cut(s) 907
KroNI GCCGGC 1 cut(s) 909
Kzo9I GATC 3 cut(s) 578, 713, 726
Lsp1109I GCAGC 5 cut(s) 454, 536, 548, 653, 935
LweI GCATC 1 cut(s) 810
MaeI CTAG 5 cut(s) 437, 566, 680, 888, 973
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 284, 890
MalI GATC 3 cut(s) 580, 715, 728
MboI GATC 3 cut(s) 578, 713, 726
MboII GAAGA 2 cut(s) 305, 466
MflI RGATCY 1 cut(s) 726
MluCI AATT 2 cut(s) 36, 422
MlyI GAGTC 3 cut(s) 401, 559, 629
MnlI CCTC 8 cut(s) 254, 309, 312, 450, 503, 520, 742, 969
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 907
MroXI GAANNNNTTC 1 cut(s) 834
MseI TTAA 4 cut(s) 39, 315, 345, 723
MslI CAYNNNNRTG 1 cut(s) 125
MspCI CTTAAG 2 cut(s) 314, 722
MspI CCGG 4 cut(s) 554, 876, 908, 930
MspR9I CCNGG 2 cut(s) 168, 856
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 2 cut(s) 168, 856
MvnI CGCG 2 cut(s) 340, 584
MwoI GCNNNNNNNGC 4 cut(s) 533, 536, 756, 876
NaeI GCCGGC 1 cut(s) 909
NcoI CCATGG 1 cut(s) 918
NdeII GATC 3 cut(s) 578, 713, 726
NgoMIV GCCGGC 1 cut(s) 907
NlaIII CATG 6 cut(s) 130, 400, 487, 641, 667, 922
NlaIV GGNNCC 3 cut(s) 271, 381, 558
NmeAIII GCCGAG 1 cut(s) 474
NmuCI GTSAC 2 cut(s) 284, 890
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 400, 667
PaeI GCATGC 1 cut(s) 667
PaeR7I CTCGAG 1 cut(s) 745
PasI CCCWGGG 1 cut(s) 855
PctI GAATGC 1 cut(s) 4
PdiI GCCGGC 1 cut(s) 909
PdmI GAANNNNTTC 1 cut(s) 834
PfeI GAWTC 1 cut(s) 13
PleI GAGTC 3 cut(s) 401, 558, 628
PpsI GAGTC 3 cut(s) 401, 558, 628
Ppu21I YACGTR 1 cut(s) 253
Psp6I CCWGG 2 cut(s) 166, 854
PspFI CCCAGC 2 cut(s) 474, 740
PspGI CCWGG 2 cut(s) 166, 854
PspN4I GGNNCC 3 cut(s) 271, 381, 558
PspPI GGNCC 4 cut(s) 459, 472, 497, 556
PspXI VCTCGAGB 1 cut(s) 745
PstI CTGCAG 1 cut(s) 526
PstNI CAGNNNCTG 1 cut(s) 756
PsuI RGATCY 1 cut(s) 726
RsaI GTAC 3 cut(s) 132, 215, 703
RsaNI GTAC 3 cut(s) 131, 214, 702
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 4 cut(s) 39, 315, 345, 723
Sau3AI GATC 3 cut(s) 578, 713, 726
Sau96I GGNCC 4 cut(s) 459, 472, 497, 556
SchI GAGTC 3 cut(s) 401, 559, 629
ScrFI CCNGG 2 cut(s) 168, 856
SetI ASST 7 cut(s) 255, 265, 381, 495, 746, 795, 800
SfaNI GCATC 1 cut(s) 810
SfcI CTRYAG 1 cut(s) 522
Sfr274I CTCGAG 1 cut(s) 745
SlaI CTCGAG 1 cut(s) 745
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 4 cut(s) 314, 467, 722, 745
SmoI CTYRAG 4 cut(s) 314, 467, 722, 745
SpeI ACTAGT 1 cut(s) 565
SphI GCATGC 1 cut(s) 667
Sse9I AATT 2 cut(s) 36, 422
SsiI CCGC 9 cut(s) 528, 542, 582, 597, 661, 668, 735, 927, 967
SspMI CTAG 5 cut(s) 437, 566, 680, 888, 973
StyD4I CCNGG 2 cut(s) 166, 854
StyI CCWWGG 1 cut(s) 918
TaaI ACNGT 3 cut(s) 674, 706, 943
TaiI ACGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 716, 746
TasI AATT 2 cut(s) 36, 422
TatI WGTACW 1 cut(s) 213
TauI GCSGC 5 cut(s) 530, 544, 670, 929, 970
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 4 cut(s) 39, 315, 345, 723
Tru9I TTAA 4 cut(s) 39, 315, 345, 723
TseFI GTSAC 2 cut(s) 284, 890
TseI GCWGC 5 cut(s) 442, 524, 536, 641, 923
Tsp45I GTSAC 2 cut(s) 284, 890
TspDTI ATGAA 1 cut(s) 89
Vha464I CTTAAG 2 cut(s) 314, 722
XbaI TCTAGA 1 cut(s) 679
XceI RCATGY 2 cut(s) 400, 667
XhoI CTCGAG 1 cut(s) 745
XmnI GAANNNNTTC 1 cut(s) 834
XspI CTAG 5 cut(s) 437, 566, 680, 888, 973
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.