Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Reverse (-)

19041777 .. 19042340

Gene Structure 564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATGGATGTGGTTTATTATAAGGGTCAGTTCTATTTCTTGTACTTTTCCGGCCGCGTTTCAGTGTTTGATATTGACAAAGAAGAACTAAGAGTTGTTGCTCCAAGTCTTCCAAAGGAACAGCTTTTACTCCTTCTAGGTTCTAATGTGCGTATTAAAAAGAGATACTTAGTTGAATCGGGAGGGGTTCTGTTGGTGGTTCTGTTTACTGCTCATACGTACAGCTCTGAAGGTTTAGCATTTGGCTGCAGGGTTTTTGAGGTCCCATTTACAGACAGCAAATCATGGGTGGACTCGGAGGTTAAGAGCTTGGGGAAACGAACCATTTTCCTAACTCCTTCGAGTTCTTCCTTCTCCATCGAGGCGTCAGACTATTCTAGATGTAAACCCAACTGCATCTATTTCATGAACGACAAGATAATCTTTCCAGAGATACGCAAAGATATGGGTGTTTACAATATGGAGGATGGGACAATCACCCGAGATTTTGACAGTTTCTTTGGTTTTGAAGAAGAAAGAGGAAACCATTTATGGATTCAGCCGAGTTTAGGGCTGTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

188

Amino Acids

21.53

Weight (kDa)

5.48

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	3 - 153	5.1e-27	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	365
AfaI	GTAC	2 cut(s)	44, 221
AfiI	CCNNNNNNNGG	1 cut(s)	548
AgsI	TTSAA	2 cut(s)	176, 509
AluBI	AGCT	3 cut(s)	124, 225, 309
AluI	AGCT	3 cut(s)	124, 225, 309
Ama87I	CYCGRG	1 cut(s)	480
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	246
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	480
AvaII	GGWCC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	2 cut(s)	365, 461
BfaI	CTAG	2 cut(s)	137, 378
BfmI	CTRYAG	1 cut(s)	247
BisI	GCNGC	2 cut(s)	55, 247
BlsI	GCNGC	2 cut(s)	56, 248
Bme18I	GGWCC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	264
BmsI	GCATC	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
BseGI	GGATG	2 cut(s)	13, 472
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	248, 484
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmFI	GGGAC	2 cut(s)	248, 484
BsnI	GGCC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	480
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	264
BspMAI	CTGCAG	1 cut(s)	251
BssNI	GRCGYC	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	494
BstACI	GRCGYC	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	89, 169
BstF5I	GGATG	2 cut(s)	13, 472
BstFNI	CGCG	1 cut(s)	57
BstMCI	CGRYCG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	247
BstSNI	TACGTA	1 cut(s)	219
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	101
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	13, 472
BtsIMutI	CAGTG	1 cut(s)	69
CciI	TCATGA	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	43, 220
CviAII	CATG	2 cut(s)	285, 406
CviJI	RGCY	7 cut(s)	54, 124, 225, 246, 309, 541, 553
CviKI_1	RGCY	7 cut(s)	54, 124, 225, 246, 309, 541, 553
CviQI	GTAC	2 cut(s)	43, 220
DdeI	CTNAG	2 cut(s)	89, 169
EaeI	YGGCCR	1 cut(s)	52
EagI	CGGCCG	1 cut(s)	52
EclXI	CGGCCG	1 cut(s)	52
Eco105I	TACGTA	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	262
Eco52I	CGGCCG	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	262
FaeI	CATG	2 cut(s)	288, 409
FaiI	YATR	7 cut(s)	21, 216, 286, 407, 446, 461, 532
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 407, 439
FaqI	GGGAC	2 cut(s)	248, 484
FatI	CATG	2 cut(s)	284, 405
Fnu4HI	GCNGC	2 cut(s)	55, 247
FokI	GGATG	2 cut(s)	20, 479
Fsp4HI	GCNGC	2 cut(s)	55, 247
FspBI	CTAG	2 cut(s)	137, 378
GluI	GCNGC	2 cut(s)	55, 247
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	354
Hin1I	GRCGYC	1 cut(s)	365
Hin1II	CATG	2 cut(s)	288, 409
HinfI	GANTC	3 cut(s)	176, 293, 535
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	4 cut(s)	207, 292, 386, 454
Hpy188I	TCNGA	3 cut(s)	229, 298, 370
Hpy188III	TCNNGA	4 cut(s)	180, 378, 406, 428
Hpy8I	GTNNAC	4 cut(s)	207, 292, 386, 454
HpyAV	CCTTC	4 cut(s)	143, 224, 348, 361
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	249, 396
HpyF3I	CTNAG	2 cut(s)	89, 169
HpySE526I	ACGT	1 cut(s)	218
Hsp92I	GRCGYC	1 cut(s)	365
Hsp92II	CATG	2 cut(s)	288, 409
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	3 cut(s)	64, 235, 441
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	2 cut(s)	137, 378
MaeII	ACGT	1 cut(s)	218
MboII	GAAGA	5 cut(s)	95, 101, 339, 521, 524
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	6 cut(s)	176, 253, 292, 355, 457, 512
MseI	TTAA	3 cut(s)	156, 303, 562
MspI	CCGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	57
NlaIII	CATG	2 cut(s)	288, 409
NlaIV	GGNNCC	1 cut(s)	264
PagI	TCATGA	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	176, 535
PkrI	GCNGC	2 cut(s)	56, 248
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	262
PsiI	TTATAA	1 cut(s)	21
Psp5II	RGGWCCY	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	262
PspPPI	RGGWCCY	1 cut(s)	262
PsrI	GAACNNNNNNTAC	2 cut(s)	111, 143
PstI	CTGCAG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	44, 221
RsaNI	GTAC	2 cut(s)	43, 220
SaqAI	TTAA	3 cut(s)	156, 303, 562
SatI	GCNGC	2 cut(s)	55, 247
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	287
SetI	ASST	8 cut(s)	126, 142, 221, 227, 235, 264, 303, 311
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	262
SnaBI	TACGTA	1 cut(s)	219
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	2 cut(s)	137, 378
TaaI	ACNGT	1 cut(s)	494
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	2 cut(s)	341, 360
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	176, 535
Tru1I	TTAA	3 cut(s)	156, 303, 562
Tru9I	TTAA	3 cut(s)	156, 303, 562
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	1 cut(s)	246
TspDTI	ATGAA	2 cut(s)	394, 422
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	262
XbaI	TCTAGA	1 cut(s)	377
XspI	CTAG	2 cut(s)	137, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.