Rh6DG299400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000399
Physical Location & Seq
Reverse (-)
50051230 .. 50052605
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG299400.1

Sequence Viewer

Length: 270 bp
ATGGCTACCGGGTGGTGCGATTCTCTTCCGAATTACCTTGTCTCTCTCGGCGAAAGGCTGGCAGTTTTCTGGAACAAGTTTATCACTGCAGTGCGGAAATCATTCGGCGCTGATCAGGTTCCTCTTCTTATGCTTCCAAAGAGGATTGATGCAGCCATGGTTCAGTTTTACACCCTCGCAAAAGGTGAGATCTACAACGCCAATCTCCCAGAAATCAGTGGTAAGGCCTGCTTTGCTTCCCTGGGATGGCTGCTTACTGATATCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

89

Amino Acids

9.87

Weight (kDa)

7.75

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 246
AjnI CCWGG 1 cut(s) 240
AleI CACNNNNGTG 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 46
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 152, 250
Asp700I GAANNNNTTC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 110
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 197
BbvI GCAGC 2 cut(s) 164, 237
BccI CCATC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 242
BclI TGATCA 1 cut(s) 112
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 111
BglII AGATCT 1 cut(s) 189
BisI GCNGC 2 cut(s) 153, 251
BlsI GCNGC 2 cut(s) 154, 252
Bme1390I CCNGG 2 cut(s) 10, 242
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 10, 242
BmsI GCATC 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 10
BsaJI CCNNGG 3 cut(s) 156, 240, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 3 cut(s) 156, 240, 241
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 164, 237
BshFI GGCC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 46
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 2 cut(s) 112, 189
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 91
BssECI CCNNGG 3 cut(s) 156, 240, 241
BssMI GATC 2 cut(s) 112, 189
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 242
Bst6I CTCTTC 2 cut(s) 30, 129
BstC8I GCNNGC 2 cut(s) 60, 229
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 251
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 115, 192
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 2 cut(s) 112, 189
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 2 cut(s) 8, 240
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 164, 237
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 251
BtsI GCAGTG 2 cut(s) 84, 96
BtsIMutI CAGTG 3 cut(s) 84, 96, 223
Cac8I GCNNGC 2 cut(s) 60, 229
CfoI GCGC 1 cut(s) 110
CviAII CATG 1 cut(s) 157
CviJI RGCY 5 cut(s) 5, 58, 155, 227, 250
CviKI_1 RGCY 5 cut(s) 5, 58, 155, 227, 250
DpnI GATC 2 cut(s) 114, 191
DpnII GATC 2 cut(s) 112, 189
Eam1104I CTCTTC 2 cut(s) 30, 129
EarI CTCTTC 2 cut(s) 30, 129
Eco130I CCWWGG 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 227
Eco32I GATATC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 240
EcoRV GATATC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 160
FaiI YATR 2 cut(s) 131, 158
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 1 cut(s) 156
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 153, 251
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 153, 251
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 153, 251
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 9
HhaI GCGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 89, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 2 cut(s) 112, 189
LpnPI CCDG 8 cut(s) 22, 44, 55, 101, 222, 227, 241, 254
Lsp1109I GCAGC 2 cut(s) 164, 237
LweI GCATC 1 cut(s) 139
MalI GATC 2 cut(s) 114, 191
MboI GATC 2 cut(s) 112, 189
MboII GAAGA 2 cut(s) 17, 116
MflI RGATCY 1 cut(s) 189
MluCI AATT 1 cut(s) 31
MnlI CCTC 3 cut(s) 132, 135, 185
MroXI GAANNNNTTC 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 10, 242
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 1 cut(s) 10
NcoI CCATGG 1 cut(s) 156
NdeII GATC 2 cut(s) 112, 189
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 120
NmeAIII GCCGAG 1 cut(s) 27
OliI CACNNNNGTG 1 cut(s) 89
PasI CCCWGGG 1 cut(s) 241
PceI AGGCCT 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 2 cut(s) 154, 252
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 89
SatI GCNGC 2 cut(s) 153, 251
Sau3AI GATC 2 cut(s) 112, 189
ScrFI CCNGG 2 cut(s) 10, 242
SetI ASST 3 cut(s) 39, 120, 187
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 89
Sse9I AATT 1 cut(s) 31
SseBI AGGCCT 1 cut(s) 227
SsiI CCGC 1 cut(s) 94
StuI AGGCCT 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 8, 240
StyI CCWWGG 1 cut(s) 156
TasI AATT 1 cut(s) 31
TfiI GAWTC 1 cut(s) 20
TscAI CASTG 3 cut(s) 91, 96, 223
TseI GCWGC 2 cut(s) 152, 250
TspRI CASTG 3 cut(s) 91, 96, 223
XmnI GAANNNNTTC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.