Rh1BG289300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000399
Physical Location & Seq
Reverse (-)
42521848 .. 42523310
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG289300.1

Sequence Viewer

Length: 294 bp
ATGGGAGCAACAATTAGTAATTATCAAACAAAGAAGGACTGGATGAGTCTTCATCAAGATATTGTCTTCTGTTTTGCAGAGCAAATAGTTTCCATGAAAGATTTTTTTGCTTTTGGAGGAGTTTGCAGATCAGCTGCGATCAAGGAATACTCTAATAGAGGATTAAGATTGAAGCATAAAGTTCCGGTCCTTCTCCTTCCAAAGGAGATCAGCGATCCCCTCGACAAATATAAGGAAAGATTTACCAACTTGATTTACCAGAAACTCGCGGGAAGACGTGCTATTCTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

97

Amino Acids

11.21

Weight (kDa)

9.65

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 269
AciI CCGC 1 cut(s) 269
AclWI GGATC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 172
AjiI CACGTC 1 cut(s) 278
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AlwI GGATC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 187
AvaII GGWCC 1 cut(s) 187
BbsI GAAGAC 3 cut(s) 41, 58, 280
BbvI GCAGC 1 cut(s) 121
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 187
BpiI GAAGAC 3 cut(s) 41, 58, 280
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 202
Bsp143I GATC 4 cut(s) 128, 138, 207, 214
BspACI CCGC 1 cut(s) 269
BspFNI CGCG 1 cut(s) 269
BspPI GGATC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 44
BssMI GATC 4 cut(s) 128, 138, 207, 214
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 269
BstKTI GATC 4 cut(s) 131, 141, 210, 217
BstMBI GATC 4 cut(s) 128, 138, 207, 214
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 3 cut(s) 41, 58, 280
BtrI CACGTC 1 cut(s) 278
BtsCI GGATG 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 187
CviAII CATG 1 cut(s) 94
CviJI RGCY 1 cut(s) 134
CviKI_1 RGCY 1 cut(s) 134
DpnI GATC 4 cut(s) 130, 140, 209, 216
DpnII GATC 4 cut(s) 128, 138, 207, 214
Eco47I GGWCC 1 cut(s) 187
EcoNI CCTNNNNNAGG 1 cut(s) 200
FaeI CATG 1 cut(s) 97
FaiI YATR 3 cut(s) 95, 177, 231
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HapII CCGG 1 cut(s) 185
Hin1II CATG 1 cut(s) 97
HinfI GANTC 1 cut(s) 46
HpaII CCGG 1 cut(s) 185
Hpy188III TCNNGA 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 28, 200, 206
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 77, 126
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 1 cut(s) 97
Kzo9I GATC 4 cut(s) 128, 138, 207, 214
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 25, 198, 272
Lsp1109I GCAGC 1 cut(s) 121
MaeII ACGT 1 cut(s) 277
MalI GATC 4 cut(s) 130, 140, 209, 216
MboI GATC 4 cut(s) 128, 138, 207, 214
MboII GAAGA 4 cut(s) 41, 58, 278, 285
MluCI AATT 2 cut(s) 12, 19
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 3 cut(s) 110, 152, 230
MseI TTAA 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 269
NdeII GATC 4 cut(s) 128, 138, 207, 214
NlaIII CATG 1 cut(s) 97
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 4 cut(s) 128, 138, 207, 214
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 55
SetI ASST 2 cut(s) 136, 280
SinI GGWCC 1 cut(s) 187
Sse9I AATT 2 cut(s) 12, 19
SsiI CCGC 1 cut(s) 269
TaiI ACGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 222
TasI AATT 2 cut(s) 12, 19
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 41, 110
VpaK11BI GGWCC 1 cut(s) 187
XagI CCTNNNNNAGG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.