Rh6DG111000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000399
Physical Location & Seq
Reverse (-)
14584740 .. 14585267
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG111000.1

Sequence Viewer

Length: 528 bp
ATGGATGGAACGACCATCCGTGAGTTTCACAACCTGAAAAAAGGGCTTTGCAAACTTAATTTTGCCAGAACTGCTGACAAGTTGTGTTACTCTTCTTTAGGATGGCTCATGACTCAATCTCAATATCTCAAACTTAATTTCTCGCATCCTTTAAATCAAAAGACAGTTGAGCTGCCACATAACTTGCTATATGAAAAGTATTATCAGCATGATAATCTGGCACCATTTCTCTGTTGTCTTAGCATAGAAGTAAATCTGACAGCTGACATGAAAAAGTTGATGCAACTTCCCTTGTATACACTTTCAAGAGGCGTAACGTTCTTCAACAAATTCCTGTCTTATTTTTTTCTTTCTATTTTCTTTGATGCCTCTTGGCTGGGCCAAAAAGCAAACTTATGCCTCTGTTTGAGTTTAATTTTCCCAAACAGATATTGTTCATGTGCATACAGATCAGATATTATAGATTGCCAAAGGAGTCACATGTACACGAGTATCAGGCACTCACTTATTAGTTATAAAAGGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

175

Amino Acids

20.52

Weight (kDa)

9.14

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 516
AccB1I GGYRCC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 296
AclI AACGTT 1 cut(s) 317
AcsI RAATTY 1 cut(s) 329
AfaI GTAC 1 cut(s) 485
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 2 cut(s) 306, 325
AluBI AGCT 2 cut(s) 172, 263
AluI AGCT 2 cut(s) 172, 263
AoxI GGCC 2 cut(s) 379, 522
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 329
AspS9I GGNCC 2 cut(s) 379, 522
BaeI ACNNNNGTAYC 2 cut(s) 475, 508
BanI GGYRCC 1 cut(s) 220
BauI CACGAG 1 cut(s) 487
BbvI GCAGC 1 cut(s) 159
BccI CCATC 2 cut(s) 23, 96
BfaI CTAG 1 cut(s) 526
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 379, 522
BmiI GGNNCC 1 cut(s) 222
BmsI GCATC 3 cut(s) 154, 270, 355
BseGI GGATG 4 cut(s) 10, 15, 107, 145
BseXI GCAGC 1 cut(s) 159
BseYI CCCAGC 1 cut(s) 376
BshFI GGCC 2 cut(s) 381, 524
BshNI GGYRCC 1 cut(s) 220
BsnI GGCC 2 cut(s) 381, 524
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 1 cut(s) 449
BspANI GGCC 2 cut(s) 381, 524
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 220
BsrGI TGTACA 1 cut(s) 483
BssMI GATC 1 cut(s) 449
BssNAI GTATAC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 487
Bst1107I GTATAC 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 487
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 97
BstAUI TGTACA 1 cut(s) 483
BstDEI CTNAG 1 cut(s) 239
BstF5I GGATG 4 cut(s) 10, 15, 107, 145
BstKTI GATC 1 cut(s) 452
BstMBI GATC 1 cut(s) 449
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 484
BstV1I GCAGC 1 cut(s) 159
BstZ17I GTATAC 1 cut(s) 297
BsuRI GGCC 2 cut(s) 381, 524
BtsCI GGATG 4 cut(s) 10, 15, 107, 145
CciI TCATGA 1 cut(s) 108
Cfr13I GGNCC 2 cut(s) 379, 522
Csp6I GTAC 1 cut(s) 484
CspCI CAANNNNNGTGG 2 cut(s) 165, 200
CviAII CATG 5 cut(s) 109, 209, 268, 438, 481
CviJI RGCY 7 cut(s) 46, 106, 172, 263, 376, 381, 524
CviKI_1 RGCY 7 cut(s) 46, 106, 172, 263, 376, 381, 524
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 1 cut(s) 239
DpnI GATC 1 cut(s) 451
DpnII GATC 1 cut(s) 449
DraI TTTAAA 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 522
FaeI CATG 5 cut(s) 112, 212, 271, 441, 484
FatI CATG 5 cut(s) 108, 208, 267, 437, 480
FblI GTMKAC 1 cut(s) 296
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 4 cut(s) 2, 17, 114, 132
Fsp4HI GCNGC 1 cut(s) 173
FspBI CTAG 1 cut(s) 526
GluI GCNGC 1 cut(s) 173
GsaI CCCAGC 1 cut(s) 380
HaeIII GGCC 2 cut(s) 381, 524
Hin1II CATG 5 cut(s) 112, 212, 271, 441, 484
HinfI GANTC 2 cut(s) 112, 475
Hpy166II GTNNAC 2 cut(s) 297, 486
Hpy188I TCNGA 2 cut(s) 258, 454
Hpy188III TCNNGA 2 cut(s) 109, 306
Hpy8I GTNNAC 2 cut(s) 297, 486
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 51, 283, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 5 cut(s) 112, 212, 271, 441, 484
Kzo9I GATC 1 cut(s) 449
LpnPI CCDG 6 cut(s) 47, 79, 203, 347, 362, 481
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 3 cut(s) 154, 270, 355
MaeI CTAG 1 cut(s) 526
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 3 cut(s) 86, 313, 476
MalI GATC 1 cut(s) 451
MboI GATC 1 cut(s) 449
MboII GAAGA 2 cut(s) 84, 313
MluCI AATT 4 cut(s) 58, 136, 329, 414
MlyI GAGTC 2 cut(s) 106, 484
MnlI CCTC 3 cut(s) 302, 379, 410
MseI TTAA 4 cut(s) 57, 135, 152, 413
MspA1I CMGCKG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 449
NlaIII CATG 5 cut(s) 112, 212, 271, 441, 484
NlaIV GGNNCC 1 cut(s) 222
NmuCI GTSAC 1 cut(s) 476
NspI RCATGY 1 cut(s) 484
PagI TCATGA 1 cut(s) 108
PciI ACATGT 1 cut(s) 480
PkrI GCNGC 1 cut(s) 174
PleI GAGTC 2 cut(s) 106, 483
PpsI GAGTC 2 cut(s) 106, 483
PscI ACATGT 1 cut(s) 480
PsiI TTATAA 1 cut(s) 516
Psp1406I AACGTT 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 376
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 2 cut(s) 379, 522
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
SaqAI TTAA 4 cut(s) 57, 135, 152, 413
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 1 cut(s) 449
Sau96I GGNCC 2 cut(s) 379, 522
SchI GAGTC 2 cut(s) 106, 484
SetI ASST 4 cut(s) 36, 174, 265, 320
SfaNI GCATC 3 cut(s) 154, 270, 355
Sse9I AATT 4 cut(s) 58, 136, 329, 414
SspMI CTAG 1 cut(s) 526
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 320
TasI AATT 4 cut(s) 58, 136, 329, 414
TatI WGTACW 1 cut(s) 483
Tru1I TTAA 4 cut(s) 57, 135, 152, 413
Tru9I TTAA 4 cut(s) 57, 135, 152, 413
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 3 cut(s) 207, 284, 426
TspGWI ACGGA 1 cut(s) 8
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 296
XspI CTAG 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.