Rorug07G0044900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000399
Physical Location & Seq
Forward (+)
3272020 .. 3272316
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0044900.1

Sequence Viewer

Length: 297 bp
ATGGTTGCTAAGAGGCCGACTCCGGAATGTGAGATTGCTGAGAAAGGGCTACTTGCTAGGGAGTTTGTCAGTCTGAGATCTATTGGCATGGCAAGGAGCCAAGGAAGGCTACTTGGGAGTGTGAGATTCGGTAAGACTACTATTATTATTTATAGGCTTTCGGTGGGCCAGGGCGAGGAGCAGCAGAAACCTGTGATTCCGGTGGTTGGTGAAGCCGACAAGGAGTACGGTTTCGACCGCGACGGTCCGGTCACCATCCCGTGCCACGTGGAGAGTTCCTCGCCGTTGAGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

98

Amino Acids

10.71

Weight (kDa)

8.71

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AccII CGCG 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 22
AciI CCGC 1 cut(s) 238
AcvI CACGTG 1 cut(s) 268
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 175, 206
AjnI CCWGG 1 cut(s) 168
Aor13HI TCCGGA 1 cut(s) 22
AoxI GGCC 2 cut(s) 14, 166
ApeKI GCWGC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 166, 245
AsuHPI GGTGA 2 cut(s) 221, 244
AvaII GGWCC 1 cut(s) 245
BbrPI CACGTG 1 cut(s) 268
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 170
BfaI CTAG 1 cut(s) 57
BglII AGATCT 1 cut(s) 77
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 166, 245
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 170
BplI GAGNNNNNCTC 3 cut(s) 36, 263, 295
BsaAI YACGTR 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 100, 169
BsaWI WCCGGW 3 cut(s) 22, 199, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 206
BseAI TCCGGA 1 cut(s) 22
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 100, 169
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 175, 206
BseMII CTCAG 2 cut(s) 30, 65
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 16, 168
BsiEI CGRYCG 1 cut(s) 238
BsiSI CCGG 3 cut(s) 23, 200, 248
BslI CCNNNNNNNGG 2 cut(s) 175, 206
BsnI GGCC 2 cut(s) 16, 168
Bsp13I TCCGGA 1 cut(s) 22
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 1 cut(s) 238
BspANI GGCC 2 cut(s) 16, 168
BspCNI CTCAG 2 cut(s) 31, 66
BspEI TCCGGA 1 cut(s) 22
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 100, 169
BssMI GATC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 230, 245
BstBAI YACGTR 1 cut(s) 268
BstDEI CTNAG 3 cut(s) 9, 39, 74
BstEII GGTNACC 1 cut(s) 250
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 1 cut(s) 80
BstMBI GATC 1 cut(s) 77
BstMCI CGRYCG 1 cut(s) 238
BstNI CCWGG 1 cut(s) 170
BstPI GGTNACC 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 2 cut(s) 16, 168
BtsCI GGATG 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 166, 245
CpoI CGGWCCG 1 cut(s) 245
Csp6I GTAC 1 cut(s) 226
CspI CGGWCCG 1 cut(s) 245
CviAII CATG 2 cut(s) 88, 294
CviJI RGCY 7 cut(s) 16, 49, 99, 109, 157, 168, 215
CviKI_1 RGCY 7 cut(s) 16, 49, 99, 109, 157, 168, 215
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 3 cut(s) 9, 39, 74
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 268
Eco91I GGTNACC 1 cut(s) 250
EcoO65I GGTNACC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 91, 297
FaiI YATR 3 cut(s) 89, 153, 295
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 2 cut(s) 87, 293
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 1 cut(s) 57
GluI GCNGC 1 cut(s) 182
HaeIII GGCC 2 cut(s) 16, 168
HapII CCGG 3 cut(s) 23, 200, 248
Hin1II CATG 2 cut(s) 91, 297
HinfI GANTC 3 cut(s) 19, 126, 196
HpaII CCGG 3 cut(s) 23, 200, 248
HphI GGTGA 2 cut(s) 221, 244
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 2 cut(s) 230, 245
HpyCH4IV ACGT 1 cut(s) 267
HpyF3I CTNAG 3 cut(s) 9, 39, 74
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 2 cut(s) 91, 297
Kpn2I TCCGGA 1 cut(s) 22
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 2 cut(s) 96, 178
LpnPI CCDG 6 cut(s) 36, 155, 182, 204, 213, 261
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 250
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MflI RGATCY 1 cut(s) 77
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 4 cut(s) 6, 169, 282, 289
MroI TCCGGA 1 cut(s) 22
MspI CCGG 3 cut(s) 23, 200, 248
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 240
NdeII GATC 1 cut(s) 77
NlaIII CATG 2 cut(s) 91, 297
NlaIV GGNNCC 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 250
PfeI GAWTC 2 cut(s) 126, 196
PkrI GCNGC 1 cut(s) 183
PleI GAGTC 1 cut(s) 13
PmaCI CACGTG 1 cut(s) 268
PmlI CACGTG 1 cut(s) 268
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 168
PspCI CACGTG 1 cut(s) 268
PspEI GGTNACC 1 cut(s) 250
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 2 cut(s) 166, 245
PsuI RGATCY 1 cut(s) 77
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
Rsr2I CGGWCCG 1 cut(s) 245
RsrII CGGWCCG 1 cut(s) 245
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 2 cut(s) 166, 245
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 170
SetI ASST 2 cut(s) 193, 270
SinI GGWCC 1 cut(s) 245
SsiI CCGC 1 cut(s) 238
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 230, 245
TaiI ACGT 1 cut(s) 270
TaqI TCGA 1 cut(s) 234
TfiI GAWTC 2 cut(s) 126, 196
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 245
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.