RchiOBHm_Chr7g0210061

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000399
Physical Location & Seq
Reverse (-)
27671604 .. 27672673
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18796

Sequence Viewer

Length: 642 bp
ATGATGTATAAACATTATGGAGACAAGGACTATCTCATTATAGAAAACCGTGTCACTTTGAACAAGTTTGCCTTATCATCGAGCCCTTCTTCGACATCGGATTATGTAGTCAAGGCTGTTTACAATTGGGACAGATTGACATTTTGTAGACCGGTAGATGAATGGACCATGGTAGAAGAAACAAATGAGAATTATACGTTCTACTGTGATATAGCTTATTATAAGGGAGTAAGGGACATGCAATTCTACATTGTGGATAACTGCGGACGTGTCTTGGTTTGTCACATTGAAGACACTGAACAAGCAAGGATAAGGGTGATTATTGGTCAATCGGTTCCTTTGAAACTTGGACGTCATGTTGGGATTACTTTCTGGTGGAATCGAGAGGGGGTCTTATTGGCAGTTCAACATGTTTACACATTCAAGGACAGCTTCCAGGCTATTGAGTTTAGGGTTTTTGAGGTTCCATTTAGTAATGGAAATTGGTCGGACTCGGAGGTAACAAACTTGGGGAGCAGAATATTGTTCTTAGGTCCAAGTTCTTCATTCTCTATTGAAGCCTCCACCGACTCTAGTTGCGAGAAGAATTGCATAATACTACACAAACAATACTATTCAATCTTTCCGCAGAAAAATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

213

Amino Acids

24.8

Weight (kDa)

5.74

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 16 - 198 7.8e-28 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AatII GACGTC 1 cut(s) 355
AccI GTMKAC 1 cut(s) 148
AciI CCGC 2 cut(s) 264, 626
AcyI GRCGYC 1 cut(s) 352
AflIII ACRYGT 2 cut(s) 268, 409
AgeI ACCGGT 1 cut(s) 151
AgsI TTSAA 7 cut(s) 61, 290, 343, 407, 424, 557, 618
AjiI CACGTC 1 cut(s) 269
AjnI CCWGG 1 cut(s) 435
AluBI AGCT 2 cut(s) 215, 432
AluI AGCT 2 cut(s) 215, 432
Alw26I GTCTC 1 cut(s) 15
AsiGI ACCGGT 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 165, 533
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 2 cut(s) 165, 533
BanII GRGCYC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 297
BciT130I CCWGG 1 cut(s) 437
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 573
Bme1390I CCNGG 1 cut(s) 437
Bme18I GGWCC 2 cut(s) 165, 533
BmgBI CACGTC 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 165, 533
BmiI GGNNCC 2 cut(s) 336, 465
BmrFI CCNGG 1 cut(s) 437
BpiI GAAGAC 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 151
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 151
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 2 cut(s) 143, 248
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 2 cut(s) 143, 248
Bsp1286I GDGCHC 1 cut(s) 86
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 2 cut(s) 264, 626
BspLI GGNNCC 2 cut(s) 336, 465
BsrFI RCCGGY 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 168
BssNI GRCGYC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 2 cut(s) 50, 206
BstACI GRCGYC 1 cut(s) 352
BstDEI CTNAG 1 cut(s) 529
BstDSI CCRYGG 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 437
BstNSI RCATGY 2 cut(s) 241, 413
BstSCI CCNGG 1 cut(s) 435
BstV2I GAAGAC 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 168
BtrI CACGTC 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 294
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 165, 533
CspAI ACCGGT 1 cut(s) 151
CviAII CATG 4 cut(s) 169, 238, 356, 410
CviJI RGCY 6 cut(s) 84, 116, 215, 432, 440, 560
CviKI_1 RGCY 6 cut(s) 84, 116, 215, 432, 440, 560
DdeI CTNAG 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 165, 533
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 4 cut(s) 172, 241, 359, 413
FalI AAGNNNNNCTT 4 cut(s) 56, 88, 416, 448
FaqI GGGAC 2 cut(s) 143, 248
FatI CATG 4 cut(s) 168, 237, 355, 409
FblI GTMKAC 1 cut(s) 148
FriOI GRGCYC 1 cut(s) 86
FspBI CTAG 1 cut(s) 573
HapII CCGG 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 352
Hin1II CATG 4 cut(s) 172, 241, 359, 413
HinfI GANTC 3 cut(s) 379, 491, 569
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 3 cut(s) 121, 149, 415
Hpy188I TCNGA 3 cut(s) 100, 490, 496
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 3 cut(s) 121, 149, 415
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 2 cut(s) 50, 206
HpyCH4IV ACGT 3 cut(s) 197, 268, 352
HpyCH4V TGCA 2 cut(s) 241, 591
HpyF3I CTNAG 1 cut(s) 529
HpySE526I ACGT 3 cut(s) 197, 268, 352
Hsp92I GRCGYC 1 cut(s) 352
Hsp92II CATG 4 cut(s) 172, 241, 359, 413
LmnI GCTCC 1 cut(s) 513
LpnPI CCDG 4 cut(s) 165, 358, 422, 449
MaeI CTAG 1 cut(s) 573
MaeII ACGT 3 cut(s) 197, 268, 352
MaeIII GTNAC 3 cut(s) 52, 281, 499
MboII GAAGA 5 cut(s) 81, 188, 302, 534, 595
MfeI CAATTG 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 6 cut(s) 124, 190, 242, 481, 586, 634
MlyI GAGTC 2 cut(s) 485, 563
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 4 cut(s) 379, 454, 490, 571
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 437
MunI CAATTG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 437
NcoI CCATGG 1 cut(s) 168
NlaIII CATG 4 cut(s) 172, 241, 359, 413
NlaIV GGNNCC 2 cut(s) 336, 465
NmuCI GTSAC 2 cut(s) 52, 281
NspI RCATGY 2 cut(s) 241, 413
PciI ACATGT 1 cut(s) 409
PfeI GAWTC 1 cut(s) 379
PinAI ACCGGT 1 cut(s) 151
PleI GAGTC 2 cut(s) 485, 563
PpsI GAGTC 2 cut(s) 485, 563
PscI ACATGT 1 cut(s) 409
PsiI TTATAA 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 435
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 2 cut(s) 336, 465
PspPI GGNCC 2 cut(s) 165, 533
Sau96I GGNCC 2 cut(s) 165, 533
SchI GAGTC 2 cut(s) 485, 563
ScrFI CCNGG 1 cut(s) 437
SduI GDGCHC 1 cut(s) 86
SetI ASST 8 cut(s) 200, 217, 271, 355, 434, 465, 501, 535
SinI GGWCC 2 cut(s) 165, 533
Sse9I AATT 6 cut(s) 124, 190, 242, 481, 586, 634
SsiI CCGC 2 cut(s) 264, 626
SspI AATATT 1 cut(s) 522
SspMI CTAG 1 cut(s) 573
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 50, 206
TaiI ACGT 3 cut(s) 200, 271, 355
TaqI TCGA 3 cut(s) 80, 92, 382
TasI AATT 6 cut(s) 124, 190, 242, 481, 586, 634
TfiI GAWTC 1 cut(s) 379
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 2 cut(s) 52, 281
Tsp45I GTSAC 2 cut(s) 52, 281
TspDTI ATGAA 2 cut(s) 174, 534
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 2 cut(s) 165, 533
XceI RCATGY 2 cut(s) 241, 413
XmiI GTMKAC 1 cut(s) 148
XspI CTAG 1 cut(s) 573
ZraI GACGTC 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.