Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Forward (+)

16505093 .. 16511194

Gene Structure 6102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGATGATCAGAAAAGACCACGGGAGTCAAACTCTTCGGTCCTTCTAGTTTATCAGAGAAAAAGAAGAATAATCTCGATGGCGCCCAACTGGTCGTACGATCTTCCCGAAGAGCTTATCATCTCTGTTGCCAAACGGCTGACAGATTGCTTGCAGGATTTTATTTTTTTCGGTGCAGTTTGCAAATCATGGAGATCAGCCGCCACTGAGGTAAAGGAGAAAAACCCTAATAATATTGCATTTAGATTATTAACACACCAAGCTCCTCTCCTTTTGCTTCCACTTTCTTATTGGCAACGGCCTCCTCCCATCTTGGTCCGTAATCCGGTTCCTAAAATTATCAGGCCGCCTTTCAAGGACAAGAATGAGGGTTTGAATGAGGCAGTTGAGTTTTACAGTCTGAAGGGAAAAGGTAATAAGATCAGTTACAAACTTAATCTACCAAAAATATTACCAAAAACAAGAATGAGGATGTGCTTTTCATCTGTTGGATGGCTGGTGATTGTATCTAAAACTAAAGGGTGTGAATGGAGTCTTGTGCATCCTTTAAATCATGCCAAAGTTGAGCTCCCAGATGTACGGGGGTCTTTGCCAGGCAGCGTTGTTTCTGGTTTCCGGTTAGGGAAGTTTGCCTTATCATCGAGCCCTTCTTGGACATCGGATTACATAGTCATGTTTCAATCAGGTCATAGATTTGGTTTTTGCAGGCCAGGGCTAGGTGAAAATTGGAAATGCATAGTATCATGGAGAGATTTAATAATGGATCTGAGTTATTATAAAGGACAGTTCTATTTCGTGCACCTTTCGAGCCGCATTTCAGTTTTTGATATTGACAAAGAAGAAATAAGGCTTGTTGCCCCAGAATTTCCAGAGGAACAACTTTTAGGTCCTAATGTGCGTATTAAAGAGCACTATTTAGTGGAATCAGCGGGGGTTCTTTTGGTAGTTCTGTTTACTACCACAACCACCAAGTTTAAAGACCAAGGATTAACATTTGGCTGCAGGGTTTTTGAGGTCCCATTTACAAACAGCAAATCGTGGTCGGACTCGGAGGTTAGGAGCTTGGGGAACAGAACCATTTTCCTAAGTAAATGTAGTTCTTCCTTCTCAATCGAGGCATCAGACTATTCTGGATCATTTCGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

382

Amino Acids

43.7

Weight (kDa)

9.49

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	131 - 378	1.2e-36	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	777
AccB1I	GGYRCC	1 cut(s)	82
AciI	CCGC	4 cut(s)	201, 347, 811, 929
AclWI	GGATC	2 cut(s)	771, 1141
AcsI	RAATTY	1 cut(s)	863
AcuI	CTGAAG	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	2 cut(s)	98, 579
AfiI	CCNNNNNNNGG	2 cut(s)	325, 716
AgsI	TTSAA	3 cut(s)	355, 376, 680
AjnI	CCWGG	2 cut(s)	592, 709
AluBI	AGCT	4 cut(s)	115, 263, 568, 1062
AluI	AGCT	4 cut(s)	115, 263, 568, 1062
Alw21I	GWGCWC	3 cut(s)	570, 801, 912
Alw44I	GTGCAC	1 cut(s)	797
AlwI	GGATC	2 cut(s)	771, 1141
AoxI	GGCC	3 cut(s)	299, 344, 707
ApaLI	GTGCAC	1 cut(s)	797
ApeKI	GCWGC	2 cut(s)	597, 999
ApoI	RAATTY	1 cut(s)	863
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	4 cut(s)	40, 316, 887, 1015
AsuHPI	GGTGA	2 cut(s)	511, 731
AvaII	GGWCC	4 cut(s)	40, 316, 887, 1015
BaeGI	GKGCMC	1 cut(s)	801
BanI	GGYRCC	1 cut(s)	82
BanII	GRGCYC	2 cut(s)	570, 647
Bbv12I	GWGCWC	3 cut(s)	570, 801, 912
BbvI	GCAGC	2 cut(s)	609, 986
BccI	CCATC	3 cut(s)	73, 317, 486
BceAI	ACGGC	2 cut(s)	152, 314
BciT130I	CCWGG	2 cut(s)	594, 711
BclI	TGATCA	1 cut(s)	7
BfaI	CTAG	2 cut(s)	47, 716
BfmI	CTRYAG	1 cut(s)	1000
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	5 cut(s)	201, 347, 598, 811, 1000
BlsI	GCNGC	5 cut(s)	202, 348, 599, 812, 1001
Bme1390I	CCNGG	2 cut(s)	594, 711
Bme18I	GGWCC	4 cut(s)	40, 316, 887, 1015
BmgT120I	GGNCC	4 cut(s)	40, 316, 887, 1015
BmiI	GGNNCC	3 cut(s)	84, 330, 1017
BmrFI	CCNGG	2 cut(s)	594, 711
BmsI	GCATC	2 cut(s)	550, 1127
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	20, 710, 982
BsaWI	WCCGGW	2 cut(s)	325, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 716
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	594, 711
BseDI	CCNNGG	3 cut(s)	20, 710, 982
BseGI	GGATG	4 cut(s)	10, 477, 497, 541
BseLI	CCNNNNNNNGG	2 cut(s)	325, 716
BseMII	CTCAG	2 cut(s)	198, 758
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	2 cut(s)	255, 294
BseSI	GKGCMC	1 cut(s)	801
BseXI	GCAGC	2 cut(s)	609, 986
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	301, 346, 709
BshNI	GGYRCC	1 cut(s)	82
BsiHKAI	GWGCWC	3 cut(s)	570, 801, 912
BsiSI	CCGG	2 cut(s)	326, 616
BsiWI	CGTACG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	1001
BslI	CCNNNNNNNGG	2 cut(s)	325, 716
BsmFI	GGGAC	1 cut(s)	1001
BsnI	GGCC	3 cut(s)	301, 346, 709
Bsp1286I	GDGCHC	4 cut(s)	570, 647, 801, 912
Bsp143I	GATC	6 cut(s)	7, 100, 194, 420, 763, 1133
BspACI	CCGC	4 cut(s)	201, 347, 811, 929
BspANI	GGCC	3 cut(s)	301, 346, 709
BspCNI	CTCAG	2 cut(s)	199, 759
BspLI	GGNNCC	3 cut(s)	84, 330, 1017
BspMAI	CTGCAG	1 cut(s)	1004
BspPI	GGATC	2 cut(s)	771, 1141
BspQI	GCTCTTC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	3 cut(s)	20, 710, 982
BssMI	GATC	6 cut(s)	7, 100, 194, 420, 763, 1133
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	982
Bst2UI	CCWGG	2 cut(s)	594, 711
Bst4CI	ACNGT	2 cut(s)	398, 786
Bst6I	CTCTTC	2 cut(s)	40, 105
BstACI	GRCGYC	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	152, 707
BstDEI	CTNAG	3 cut(s)	207, 767, 1085
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	4 cut(s)	10, 477, 497, 541
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	6 cut(s)	10, 103, 197, 423, 766, 1136
BstMBI	GATC	6 cut(s)	7, 100, 194, 420, 763, 1133
BstNI	CCWGG	2 cut(s)	594, 711
BstSCI	CCNGG	2 cut(s)	592, 709
BstSFI	CTRYAG	1 cut(s)	1000
BstSLI	GKGCMC	1 cut(s)	801
BstV1I	GCAGC	2 cut(s)	609, 986
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BsuRI	GGCC	3 cut(s)	301, 346, 709
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	4 cut(s)	10, 477, 497, 541
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	152, 707
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	4 cut(s)	40, 316, 887, 1015
Csp6I	GTAC	2 cut(s)	97, 578
CviAII	CATG	4 cut(s)	189, 554, 673, 744
CviQI	GTAC	2 cut(s)	97, 578
DdeI	CTNAG	3 cut(s)	207, 767, 1085
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	6 cut(s)	9, 102, 196, 422, 765, 1135
DpnII	GATC	6 cut(s)	7, 100, 194, 420, 763, 1133
DraI	TTTAAA	2 cut(s)	549, 976
Eam1104I	CTCTTC	2 cut(s)	40, 105
EarI	CTCTTC	2 cut(s)	40, 105
Ecl136II	GAGCTC	1 cut(s)	568
Eco130I	CCWWGG	1 cut(s)	982
Eco24I	GRGCYC	2 cut(s)	570, 647
Eco47I	GGWCC	4 cut(s)	40, 316, 887, 1015
Eco53kI	GAGCTC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	568
EcoO109I	RGGNCCY	2 cut(s)	887, 1015
EcoRII	CCWGG	2 cut(s)	592, 709
EcoT14I	CCWWGG	1 cut(s)	982
EcoT22I	ATGCAT	1 cut(s)	737
EcoT38I	GRGCYC	2 cut(s)	570, 647
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	982
FaeI	CATG	4 cut(s)	192, 557, 676, 747
FaiI	YATR	8 cut(s)	190, 555, 668, 674, 690, 737, 745, 777
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FaqI	GGGAC	1 cut(s)	1001
FatI	CATG	4 cut(s)	188, 553, 672, 743
FauI	CCCGC	1 cut(s)	922
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	5 cut(s)	201, 347, 598, 811, 1000
FokI	GGATG	4 cut(s)	17, 484, 504, 528
FriOI	GRGCYC	2 cut(s)	570, 647
Fsp4HI	GCNGC	5 cut(s)	201, 347, 598, 811, 1000
FspBI	CTAG	2 cut(s)	47, 716
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	5 cut(s)	201, 347, 598, 811, 1000
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	301, 346, 709
HapII	CCGG	2 cut(s)	326, 616
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	192, 557, 676, 747
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	4 cut(s)	26, 532, 923, 1046
HpaII	CCGG	2 cut(s)	326, 616
HphI	GGTGA	2 cut(s)	511, 731
Hpy166II	GTNNAC	2 cut(s)	799, 954
Hpy188I	TCNGA	8 cut(s)	12, 57, 402, 661, 768, 1045, 1051, 1123
Hpy188III	TCNNGA	4 cut(s)	76, 107, 869, 1131
Hpy8I	GTNNAC	2 cut(s)	799, 954
HpyAV	CCTTC	4 cut(s)	53, 397, 657, 1114
HpyCH4III	ACNGT	2 cut(s)	398, 786
HpyCH4V	TGCA	9 cut(s)	154, 176, 183, 239, 541, 705, 735, 799, 1002
HpyF3I	CTNAG	3 cut(s)	207, 767, 1085
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	4 cut(s)	192, 557, 676, 747
HspAI	GCGC	1 cut(s)	83
KasI	GGCGCC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	7, 100, 194, 420, 763, 1133
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	3 cut(s)	268, 573, 1059
Lsp1109I	GCAGC	2 cut(s)	609, 986
LweI	GCATC	2 cut(s)	550, 1127
MaeI	CTAG	2 cut(s)	47, 716
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	6 cut(s)	9, 102, 196, 422, 765, 1135
MboI	GATC	6 cut(s)	7, 100, 194, 420, 763, 1133
MboII	GAAGA	6 cut(s)	27, 78, 95, 122, 851, 1092
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	4 cut(s)	570, 647, 801, 912
MluCI	AATT	3 cut(s)	336, 724, 863
Mly113I	GGCGCC	1 cut(s)	83
MlyI	GAGTC	3 cut(s)	35, 541, 1040
MmeI	TCCRAC	2 cut(s)	469, 1023
Mph1103I	ATGCAT	1 cut(s)	737
MseI	TTAA	7 cut(s)	251, 435, 548, 755, 903, 975, 989
MslI	CAYNNNNRTG	1 cut(s)	671
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	2 cut(s)	326, 616
MspR9I	CCNGG	2 cut(s)	594, 711
MvaI	CCWGG	2 cut(s)	594, 711
NarI	GGCGCC	1 cut(s)	83
NdeII	GATC	6 cut(s)	7, 100, 194, 420, 763, 1133
NlaIII	CATG	4 cut(s)	192, 557, 676, 747
NlaIV	GGNNCC	3 cut(s)	84, 330, 1017
NsiI	ATGCAT	1 cut(s)	737
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	923
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	5 cut(s)	202, 348, 599, 812, 1001
PleI	GAGTC	3 cut(s)	34, 540, 1040
PluTI	GGCGCC	1 cut(s)	86
PpsI	GAGTC	3 cut(s)	34, 540, 1040
PpuMI	RGGWCCY	2 cut(s)	887, 1015
PsiI	TTATAA	1 cut(s)	777
Psp124BI	GAGCTC	1 cut(s)	570
Psp5II	RGGWCCY	2 cut(s)	887, 1015
Psp6I	CCWGG	2 cut(s)	592, 709
PspGI	CCWGG	2 cut(s)	592, 709
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	84, 330, 1017
PspPI	GGNCC	4 cut(s)	40, 316, 887, 1015
PspPPI	RGGWCCY	2 cut(s)	887, 1015
PsrI	GAACNNNNNNTAC	2 cut(s)	1081, 1113
PstI	CTGCAG	1 cut(s)	1004
PsuI	RGATCY	1 cut(s)	763
RsaI	GTAC	2 cut(s)	98, 579
RsaNI	GTAC	2 cut(s)	97, 578
RseI	CAYNNNNRTG	1 cut(s)	671
SacI	GAGCTC	1 cut(s)	570
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	7 cut(s)	251, 435, 548, 755, 903, 975, 989
SatI	GCNGC	5 cut(s)	201, 347, 598, 811, 1000
Sau3AI	GATC	6 cut(s)	7, 100, 194, 420, 763, 1133
Sau96I	GGNCC	4 cut(s)	40, 316, 887, 1015
SchI	GAGTC	3 cut(s)	35, 541, 1040
ScrFI	CCNGG	2 cut(s)	594, 711
SduI	GDGCHC	4 cut(s)	570, 647, 801, 912
SfaNI	GCATC	2 cut(s)	550, 1127
SfcI	CTRYAG	1 cut(s)	1000
SfoI	GGCGCC	1 cut(s)	84
SinI	GGWCC	4 cut(s)	40, 316, 887, 1015
SmiMI	CAYNNNNRTG	1 cut(s)	671
Sse9I	AATT	3 cut(s)	336, 724, 863
SsiI	CCGC	4 cut(s)	201, 347, 811, 929
SspDI	GGCGCC	1 cut(s)	82
SspI	AATATT	2 cut(s)	235, 450
SspMI	CTAG	2 cut(s)	47, 716
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	2 cut(s)	592, 709
StyI	CCWWGG	1 cut(s)	982
TaaI	ACNGT	2 cut(s)	398, 786
TaqI	TCGA	4 cut(s)	77, 641, 806, 1113
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	3 cut(s)	336, 724, 863
TauI	GCSGC	3 cut(s)	203, 349, 813
TfiI	GAWTC	1 cut(s)	923
Tru1I	TTAA	7 cut(s)	251, 435, 548, 755, 903, 975, 989
Tru9I	TTAA	7 cut(s)	251, 435, 548, 755, 903, 975, 989
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	597, 999
TspDTI	ATGAA	1 cut(s)	471
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	797
VpaK11BI	GGWCC	4 cut(s)	40, 316, 887, 1015
XapI	RAATTY	1 cut(s)	863
XcmI	CCANNNNNNNNNTGG	1 cut(s)	288
XspI	CTAG	2 cut(s)	47, 716
Zsp2I	ATGCAT	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.