FvH4_5g02180

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000399
Physical Location & Seq
Reverse (-)
1355579 .. 1356586
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02180.t1

Sequence Viewer

Length: 1008 bp
ATGGAGTTCTGCCGCCACCAAAGAAAACTTTACTCCTGGATTAACACATCAAGTTCCACTATGCTTCCAGGTATAAAGGACAATAGTAATCCTATTCCCGGCCAGTGTTACAACCTCAGAAAAGGTAAGGTTTCTAGGTTTAATATACCAAAGACCATCACTCAACGTCGTCAATTAAAGCCCTTTTGTATGTCTTCTCTTGGATGGTTCATCACTGCATCATCTAGACATTTGAGTACTTCTGATTCGAGACATATTTATCTGTTGCATCCTTTCAAACATGAAGAAATTGTGCTACCAACCTTTGAATTTGGGTCTCTACGTAAGTTTGTGTTATCATGTAGTCCTTCTCTGACATCAGATTACACAGTCATGGTTTCTACTGATCACGGGGGAGAGTTCGCTTTCTGGAGACCCAAGGACAAGGAATGGAATTTTATATCATCAAAACTAGATACATGGGATTGGGATTCAGATAGGCGATCTTATGATATAGCTTATTACAGAGGACAATTTTATATCGTCGACTCCGATGGCCGTGTGTTGGTTTTTGACATTGATGACCCGGAGGATGCAACAGCAAATAAGGTGGCTGTTTCAGAGAGTCCAACATGGAGGAGTAGATATAGTGTAAATCAACTGTACCTGGTAGAATCAGGTGGTGCCTTACTGTTGGTTTTAAGGCTTGAACACACTTGTCAAAATGGGTTTAGGGTTTTTGAGGTGCCACTTAGTAGTGGGAACTGGTTGGAAGCGGAGGAGGTAAAGAACTTGGGGAACCGAGCCTTGTTTCTAAGTTTGAGAAATTCTTCCTTCTCCATAGAGGTCTCAGGCTCTTCTGGTTGCAAGGCCAATTGCATATACTTTGCAAGACATCGGAGTAGTAAATCTACTCGGACTCATTTTGAGCTGGGAGTTTTTAGTATGGAAGATAGGGAAGTCCAACCATTCATACCGAACTCATGTCACGTTCAGAAACCATATGTATGGACTCAGCCAACTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

336

Amino Acids

38.63

Weight (kDa)

8.7

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 37 - 307 4.6e-50 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 662, 724
AccI GTMKAC 1 cut(s) 525
AciI CCGC 2 cut(s) 13, 755
AcoI YGGCCR 2 cut(s) 100, 535
AcsI RAATTY 3 cut(s) 308, 433, 805
AfaI GTAC 2 cut(s) 238, 644
AfiI CCNNNNNNNGG 2 cut(s) 98, 544
AgsI TTSAA 3 cut(s) 277, 308, 689
AjnI CCWGG 3 cut(s) 35, 67, 645
AluBI AGCT 2 cut(s) 497, 910
AluI AGCT 2 cut(s) 497, 910
Alw26I GTCTC 4 cut(s) 244, 321, 406, 832
AoxI GGCC 3 cut(s) 100, 535, 849
ApoI RAATTY 3 cut(s) 308, 433, 805
Asp700I GAANNNNTTC 1 cut(s) 808
AsuC2I CCSGG 2 cut(s) 99, 566
BanI GGYRCC 2 cut(s) 662, 724
BbsI GAAGAC 1 cut(s) 186
BccI CCATC 3 cut(s) 164, 198, 527
BceAI ACGGC 1 cut(s) 522
BciT130I CCWGG 3 cut(s) 37, 69, 647
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 2 cut(s) 99, 566
BcoDI GTCTC 4 cut(s) 244, 321, 406, 832
BfaI CTAG 3 cut(s) 135, 225, 452
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 5 cut(s) 37, 69, 99, 566, 647
BmiI GGNNCC 3 cut(s) 664, 726, 779
BmrFI CCNGG 5 cut(s) 37, 69, 99, 566, 647
BmsI GCATC 3 cut(s) 227, 277, 562
BpiI GAAGAC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 430
BpuMI CCSGG 2 cut(s) 99, 566
BsaAI YACGTR 1 cut(s) 323
BsaI GGTCTC 3 cut(s) 321, 406, 832
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 544
Bse1I ACTGG 2 cut(s) 103, 749
BseBI CCWGG 3 cut(s) 37, 69, 647
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 3 cut(s) 209, 268, 577
BseLI CCNNNNNNNGG 2 cut(s) 98, 544
BseMII CTCAG 3 cut(s) 130, 843, 1007
BseNI ACTGG 2 cut(s) 103, 749
BseRI GAGGAG 2 cut(s) 631, 773
BseYI CCCAGC 1 cut(s) 910
BshFI GGCC 3 cut(s) 102, 537, 851
BshNI GGYRCC 2 cut(s) 662, 724
BsiSI CCGG 2 cut(s) 99, 566
BslI CCNNNNNNNGG 2 cut(s) 98, 544
BsmAI GTCTC 4 cut(s) 244, 321, 406, 832
BsnI GGCC 3 cut(s) 102, 537, 851
Bso31I GGTCTC 3 cut(s) 321, 406, 832
Bsp143I GATC 2 cut(s) 385, 482
BspACI CCGC 2 cut(s) 13, 755
BspANI GGCC 3 cut(s) 102, 537, 851
BspCNI CTCAG 3 cut(s) 129, 842, 1006
BspLI GGNNCC 3 cut(s) 664, 726, 779
BspQI GCTCTTC 1 cut(s) 841
BspT107I GGYRCC 2 cut(s) 662, 724
BspTNI GGTCTC 3 cut(s) 321, 406, 832
BsrI ACTGG 2 cut(s) 103, 749
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 2 cut(s) 385, 482
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 3 cut(s) 37, 69, 647
Bst4CI ACNGT 3 cut(s) 370, 642, 672
Bst6I CTCTTC 1 cut(s) 841
BstBAI YACGTR 1 cut(s) 323
BstDEI CTNAG 5 cut(s) 116, 731, 794, 829, 993
BstF5I GGATG 3 cut(s) 209, 268, 577
BstKTI GATC 2 cut(s) 388, 485
BstMAI GTCTC 4 cut(s) 244, 321, 406, 832
BstMBI GATC 2 cut(s) 385, 482
BstNI CCWGG 3 cut(s) 37, 69, 647
BstSCI CCNGG 5 cut(s) 35, 67, 97, 564, 645
BstSNI TACGTA 1 cut(s) 323
BstV2I GAAGAC 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 987
BsuRI GGCC 3 cut(s) 102, 537, 851
BtsCI GGATG 3 cut(s) 209, 268, 577
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 110, 213
CsiI ACCWGGT 1 cut(s) 645
Csp6I GTAC 2 cut(s) 237, 643
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 6 cut(s) 281, 339, 373, 459, 612, 963
CviQI GTAC 2 cut(s) 237, 643
DdeI CTNAG 5 cut(s) 116, 731, 794, 829, 993
DpnI GATC 2 cut(s) 387, 484
DpnII GATC 2 cut(s) 385, 482
EaeI YGGCCR 2 cut(s) 100, 535
Eam1104I CTCTTC 1 cut(s) 841
EarI CTCTTC 1 cut(s) 841
Eco105I TACGTA 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 417
Eco31I GGTCTC 3 cut(s) 321, 406, 832
EcoRII CCWGG 3 cut(s) 35, 67, 645
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 6 cut(s) 284, 342, 376, 462, 615, 966
FatI CATG 6 cut(s) 280, 338, 372, 458, 611, 962
FauNDI CATATG 1 cut(s) 982
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 3 cut(s) 216, 255, 584
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 3 cut(s) 135, 225, 452
GluI GCNGC 1 cut(s) 13
GsaI CCCAGC 1 cut(s) 914
GsuI CTGGAG 1 cut(s) 430
HaeIII GGCC 3 cut(s) 102, 537, 851
HapII CCGG 2 cut(s) 99, 566
Hin1II CATG 6 cut(s) 284, 342, 376, 462, 615, 966
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 7 cut(s) 245, 470, 527, 604, 653, 898, 991
HpaII CCGG 2 cut(s) 99, 566
Hpy166II GTNNAC 1 cut(s) 526
Hpy188III TCNNGA 3 cut(s) 225, 249, 409
Hpy8I GTNNAC 1 cut(s) 526
Hpy99I CGWCG 2 cut(s) 171, 527
HpyAV CCTTC 2 cut(s) 357, 823
HpyCH4III ACNGT 3 cut(s) 370, 642, 672
HpyCH4IV ACGT 3 cut(s) 166, 322, 969
HpyCH4V TGCA 6 cut(s) 218, 268, 575, 846, 858, 869
HpyF3I CTNAG 5 cut(s) 116, 731, 794, 829, 993
HpySE526I ACGT 3 cut(s) 166, 322, 969
Hsp92II CATG 6 cut(s) 284, 342, 376, 462, 615, 966
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 2 cut(s) 385, 482
LguI GCTCTTC 1 cut(s) 841
LweI GCATC 3 cut(s) 227, 277, 562
MabI ACCWGGT 1 cut(s) 645
MaeI CTAG 3 cut(s) 135, 225, 452
MaeII ACGT 3 cut(s) 166, 322, 969
MaeIII GTNAC 2 cut(s) 107, 965
MalI GATC 2 cut(s) 387, 484
MboI GATC 2 cut(s) 385, 482
MboII GAAGA 5 cut(s) 186, 296, 801, 828, 941
MfeI CAATTG 1 cut(s) 853
MluCI AATT 7 cut(s) 173, 288, 308, 433, 512, 805, 853
MlyI GAGTC 4 cut(s) 521, 613, 892, 985
MmeI TCCRAC 3 cut(s) 632, 729, 967
MnlI CCTC 8 cut(s) 125, 500, 562, 609, 715, 751, 754, 817
MroXI GAANNNNTTC 1 cut(s) 808
MseI TTAA 4 cut(s) 42, 141, 176, 680
MslI CAYNNNNRTG 2 cut(s) 371, 985
MspI CCGG 2 cut(s) 99, 566
MspR9I CCNGG 5 cut(s) 37, 69, 99, 566, 647
MunI CAATTG 1 cut(s) 853
MvaI CCWGG 3 cut(s) 37, 69, 647
NciI CCSGG 2 cut(s) 99, 566
NdeI CATATG 1 cut(s) 982
NdeII GATC 2 cut(s) 385, 482
NlaIII CATG 6 cut(s) 284, 342, 376, 462, 615, 966
NlaIV GGNNCC 3 cut(s) 664, 726, 779
NmuCI GTSAC 1 cut(s) 965
PciSI GCTCTTC 1 cut(s) 841
PcsI WCGNNNNNNNCGW 1 cut(s) 528
PdmI GAANNNNTTC 1 cut(s) 808
PfeI GAWTC 3 cut(s) 245, 470, 653
PfoI TCCNGGA 1 cut(s) 35
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 4 cut(s) 521, 612, 892, 985
PpsI GAGTC 4 cut(s) 521, 612, 892, 985
Ppu21I YACGTR 1 cut(s) 323
Psp6I CCWGG 3 cut(s) 35, 67, 645
PspFI CCCAGC 1 cut(s) 910
PspGI CCWGG 3 cut(s) 35, 67, 645
PspN4I GGNNCC 3 cut(s) 664, 726, 779
RsaI GTAC 2 cut(s) 238, 644
RsaNI GTAC 2 cut(s) 237, 643
RseI CAYNNNNRTG 2 cut(s) 371, 985
SalI GTCGAC 1 cut(s) 524
SapI GCTCTTC 1 cut(s) 841
SaqAI TTAA 4 cut(s) 42, 141, 176, 680
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 2 cut(s) 385, 482
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 4 cut(s) 521, 613, 892, 985
ScrFI CCNGG 5 cut(s) 37, 69, 99, 566, 647
SexAI ACCWGGT 1 cut(s) 645
SfaNI GCATC 3 cut(s) 227, 277, 562
SmiMI CAYNNNNRTG 2 cut(s) 371, 985
SnaBI TACGTA 1 cut(s) 323
Sse9I AATT 7 cut(s) 173, 288, 308, 433, 512, 805, 853
SsiI CCGC 2 cut(s) 13, 755
SspMI CTAG 3 cut(s) 135, 225, 452
StyD4I CCNGG 5 cut(s) 35, 67, 97, 564, 645
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 370, 642, 672
TaiI ACGT 3 cut(s) 169, 325, 972
TaqI TCGA 2 cut(s) 248, 525
TasI AATT 7 cut(s) 173, 288, 308, 433, 512, 805, 853
TatI WGTACW 1 cut(s) 236
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 3 cut(s) 245, 470, 653
Tru1I TTAA 4 cut(s) 42, 141, 176, 680
Tru9I TTAA 4 cut(s) 42, 141, 176, 680
TscAI CASTG 2 cut(s) 110, 220
TseFI GTSAC 1 cut(s) 965
Tsp45I GTSAC 1 cut(s) 965
TspDTI ATGAA 3 cut(s) 199, 297, 940
TspRI CASTG 2 cut(s) 110, 220
XapI RAATTY 3 cut(s) 308, 433, 805
XbaI TCTAGA 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 808
XspI CTAG 3 cut(s) 135, 225, 452
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.