Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Forward (+)

18564288 .. 18565553

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G190800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCCTGTAACCTGAAAACCACGGTGGCTGACTGGTCGGGTCTTCCTCAAGAACTTGTCGTCTCCATTGCCAAACAGATAGCTTTCTTGGAGGATTTTATTGCTTTTGGTGCAGTCTGCAAATCATGGAGATCAGCCGCGGCCAAGGAAAACTTTACCAGTCGATTAAAACATCAGGGCCCATTTCTTATGCTCCCACAGGAACATGGAGCTGCCATCCAAGCTGAGGGCAAAGTATGTTGTTCTTGTTCAGGATGGCTAATCACTTTACAAGGTTTGCAATTTAATCTGCTGCATCCTTTAAATCGTTCACAAATTAAGTTGCCTCGTTTTACAGATTCTAGTGCAAAACTTTCACCAGGACGATTTTATGCCGTAAGCCATAATGGGAGGGTTTCGGTTTTCGACATTGAAAACCCTACCAAGGAAGCAAAAACTGAGGTTGTTGTTCCACGGCTGCCAAGGGAACTACTTGTACATATTTCTCCTGGTAGAGTGAAGTCTTTGGTGGAGTCAGCAGGGGACTTATTAGTAGTTTCGGCTCATGAAGAAGGTTACGAACGAGCTCCTAAGTTTAGGGTTTTCAAGGTGCCTTTGAGGGATGGCAATTGGCAGTTAGACTCGGAAGTGAAGGACTTGGGTAATAGAACCCTATTTTTGGGTGATAATAATACTTCATTCTCTGTTTTGGCCTCGGACTACTCTGGATGCGAGCCGAATTGCATATACTTTTTTTCATACATATCTCAGCAGTACATATATTCCCGGCAGCCTCATAACTATCTTTTACCTTCAAGAGAGAACATAGACATTGGTATTTTTCATATGAAAAATGGAAGAATTCAGGAACACTTTTATTGGGAACAAAGAAGGTTCCCTACCTTTGGGACACCTTCCCTTGGGTTTAGTCCAAATGGCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

308

Amino Acids

34.59

Weight (kDa)

8.42

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	589
AccII	CGCG	1 cut(s)	140
AciI	CCGC	2 cut(s)	138, 140
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	840
AfaI	GTAC	2 cut(s)	477, 755
AfiI	CCNNNNNNNGG	5 cut(s)	226, 424, 658, 884, 899
AgsI	TTSAA	3 cut(s)	413, 586, 795
AjnI	CCWGG	2 cut(s)	358, 487
AluBI	AGCT	4 cut(s)	83, 212, 224, 566
AluI	AGCT	4 cut(s)	83, 212, 224, 566
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	1 cut(s)	67
AoxI	GGCC	4 cut(s)	3, 141, 178, 690
ApaI	GGGCCC	1 cut(s)	182
ApeKI	GCWGC	4 cut(s)	212, 292, 457, 769
ApoI	RAATTY	1 cut(s)	840
AspS9I	GGNCC	2 cut(s)	178, 179
AsuC2I	CCSGG	1 cut(s)	766
AsuHPI	GGTGA	2 cut(s)	348, 674
BaeGI	GKGCMC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	589
BanII	GRGCYC	2 cut(s)	182, 568
BarI	GAAGNNNNNNTAC	2 cut(s)	862, 894
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	568
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	4 cut(s)	199, 279, 444, 781
BccI	CCATC	3 cut(s)	224, 249, 596
BceAI	ACGGC	2 cut(s)	359, 470
BciT130I	CCWGG	2 cut(s)	360, 489
BcnI	CCSGG	1 cut(s)	766
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	342
BisI	GCNGC	6 cut(s)	138, 141, 213, 293, 458, 770
BlsI	GCNGC	6 cut(s)	139, 142, 214, 294, 459, 771
Bme1390I	CCNGG	3 cut(s)	360, 489, 766
BmgT120I	GGNCC	2 cut(s)	178, 179
BmiI	GGNNCC	3 cut(s)	180, 591, 875
BmrFI	CCNGG	3 cut(s)	360, 489, 766
BmsI	GCATC	2 cut(s)	304, 698
BpiI	GAAGAC	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	766
BsaJI	CCNNGG	8 cut(s)	21, 138, 144, 423, 452, 461, 693, 898
Bsc4I	CCNNNNNNNGG	5 cut(s)	226, 424, 658, 884, 899
Bse1I	ACTGG	2 cut(s)	38, 159
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	360, 489
BseDI	CCNNGG	8 cut(s)	21, 138, 144, 423, 452, 461, 693, 898
BseGI	GGATG	5 cut(s)	216, 260, 295, 607, 713
BseLI	CCNNNNNNNGG	5 cut(s)	226, 424, 658, 884, 899
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	216, 429, 761
BseNI	ACTGG	2 cut(s)	38, 159
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	4 cut(s)	199, 279, 444, 781
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	4 cut(s)	5, 143, 180, 692
BshNI	GGYRCC	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	568
BsiSI	CCGG	1 cut(s)	766
BslFI	GGGAC	2 cut(s)	536, 901
BslI	CCNNNNNNNGG	5 cut(s)	226, 424, 658, 884, 899
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	536, 901
BsnI	GGCC	4 cut(s)	5, 143, 180, 692
Bsp120I	GGGCCC	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	182, 568
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	2 cut(s)	138, 140
BspANI	GGCC	4 cut(s)	5, 143, 180, 692
BspCNI	CTCAG	3 cut(s)	217, 430, 760
BspFNI	CGCG	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	3 cut(s)	180, 591, 875
BspT107I	GGYRCC	1 cut(s)	589
BsrDI	GCAATG	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	38, 159
BssECI	CCNNGG	8 cut(s)	21, 138, 144, 423, 452, 461, 693, 898
BssMI	GATC	1 cut(s)	131
BssT1I	CCWWGG	4 cut(s)	144, 423, 461, 898
Bst2UI	CCWGG	2 cut(s)	360, 489
Bst4CI	ACNGT	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	713
BstDEI	CTNAG	4 cut(s)	225, 438, 570, 747
BstDSI	CCRYGG	3 cut(s)	21, 138, 452
BstF5I	GGATG	5 cut(s)	216, 260, 295, 607, 713
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 221
BstNI	CCWGG	2 cut(s)	360, 489
BstSCI	CCNGG	3 cut(s)	358, 487, 764
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	4 cut(s)	199, 279, 444, 781
BstV2I	GAAGAC	1 cut(s)	35
BsuRI	GGCC	4 cut(s)	5, 143, 180, 692
BtgI	CCRYGG	3 cut(s)	21, 138, 452
BtsCI	GGATG	5 cut(s)	216, 260, 295, 607, 713
Cac8I	GCNNGC	1 cut(s)	713
CciI	TCATGA	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	178, 179
Cfr42I	CCGCGG	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	476, 754
CviAII	CATG	3 cut(s)	126, 206, 545
CviQI	GTAC	2 cut(s)	476, 754
DdeI	CTNAG	4 cut(s)	225, 438, 570, 747
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
DraI	TTTAAA	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	566
Eco130I	CCWWGG	4 cut(s)	144, 423, 461, 898
Eco24I	GRGCYC	2 cut(s)	182, 568
Eco53kI	GAGCTC	1 cut(s)	566
EcoICRI	GAGCTC	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	840
EcoRII	CCWGG	2 cut(s)	358, 487
EcoT14I	CCWWGG	4 cut(s)	144, 423, 461, 898
EcoT38I	GRGCYC	2 cut(s)	182, 568
ErhI	CCWWGG	4 cut(s)	144, 423, 461, 898
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	3 cut(s)	129, 209, 548
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	2 cut(s)	536, 901
FatI	CATG	3 cut(s)	125, 205, 544
FauNDI	CATATG	1 cut(s)	825
Fnu4HI	GCNGC	6 cut(s)	138, 141, 213, 293, 458, 770
FokI	GGATG	5 cut(s)	203, 267, 282, 614, 720
FriOI	GRGCYC	2 cut(s)	182, 568
Fsp4HI	GCNGC	6 cut(s)	138, 141, 213, 293, 458, 770
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	6 cut(s)	138, 141, 213, 293, 458, 770
HaeIII	GGCC	4 cut(s)	5, 143, 180, 692
HapII	CCGG	1 cut(s)	766
Hin1II	CATG	3 cut(s)	129, 209, 548
HinfI	GANTC	3 cut(s)	338, 512, 620
HpaII	CCGG	1 cut(s)	766
HphI	GGTGA	2 cut(s)	348, 674
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	2 cut(s)	625, 697
Hpy188III	TCNNGA	6 cut(s)	50, 252, 545, 705, 795, 845
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	5 cut(s)	545, 625, 801, 864, 903
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	6 cut(s)	113, 120, 280, 295, 347, 723
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 221
HpyF3I	CTNAG	4 cut(s)	225, 438, 570, 747
Hsp92II	CATG	3 cut(s)	129, 209, 548
KspI	CCGCGG	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	3 cut(s)	198, 209, 571
Lsp1109I	GCAGC	4 cut(s)	199, 279, 444, 781
LweI	GCATC	2 cut(s)	304, 698
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	8, 554
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	3 cut(s)	35, 560, 849
MfeI	CAATTG	1 cut(s)	607
MhlI	GDGCHC	2 cut(s)	182, 568
MluCI	AATT	5 cut(s)	281, 315, 607, 718, 840
MlyI	GAGTC	2 cut(s)	521, 614
MnlI	CCTC	9 cut(s)	57, 85, 220, 336, 384, 433, 591, 703, 783
MseI	TTAA	4 cut(s)	167, 285, 302, 318
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	766
MspR9I	CCNGG	3 cut(s)	360, 489, 766
MunI	CAATTG	1 cut(s)	607
MvaI	CCWGG	2 cut(s)	360, 489
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	110, 221
NciI	CCSGG	1 cut(s)	766
NdeI	CATATG	1 cut(s)	825
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	3 cut(s)	129, 209, 548
NlaIV	GGNNCC	3 cut(s)	180, 591, 875
PagI	TCATGA	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	6 cut(s)	139, 142, 214, 294, 459, 771
PleI	GAGTC	2 cut(s)	520, 614
PpsI	GAGTC	2 cut(s)	520, 614
Psp124BI	GAGCTC	1 cut(s)	568
Psp6I	CCWGG	2 cut(s)	358, 487
PspGI	CCWGG	2 cut(s)	358, 487
PspN4I	GGNNCC	3 cut(s)	180, 591, 875
PspOMI	GGGCCC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	178, 179
PsrI	GAACNNNNNNTAC	2 cut(s)	459, 491
RsaI	GTAC	2 cut(s)	477, 755
RsaNI	GTAC	2 cut(s)	476, 754
SacI	GAGCTC	1 cut(s)	568
SacII	CCGCGG	1 cut(s)	141
SaqAI	TTAA	4 cut(s)	167, 285, 302, 318
SatI	GCNGC	6 cut(s)	138, 141, 213, 293, 458, 770
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	2 cut(s)	178, 179
SchI	GAGTC	2 cut(s)	521, 614
ScrFI	CCNGG	3 cut(s)	360, 489, 766
SduI	GDGCHC	2 cut(s)	182, 568
SfaNI	GCATC	2 cut(s)	304, 698
Sfr303I	CCGCGG	1 cut(s)	141
SgrBI	CCGCGG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	5 cut(s)	281, 315, 607, 718, 840
SsiI	CCGC	2 cut(s)	138, 140
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	568
StyD4I	CCNGG	3 cut(s)	358, 487, 764
StyI	CCWWGG	4 cut(s)	144, 423, 461, 898
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	163, 405
TasI	AATT	5 cut(s)	281, 315, 607, 718, 840
TatI	WGTACW	2 cut(s)	475, 753
TauI	GCSGC	2 cut(s)	140, 143
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	4 cut(s)	167, 285, 302, 318
Tru9I	TTAA	4 cut(s)	167, 285, 302, 318
TseI	GCWGC	4 cut(s)	212, 292, 457, 769
TspDTI	ATGAA	5 cut(s)	561, 666, 726, 812, 842
XapI	RAATTY	1 cut(s)	840
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.