Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Reverse (-)

52133011 .. 52134249

Gene Structure 1239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G028150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACACCCAACTGGTCGTACGATGTTCCTGAAGAGCTTATGATGTCTGTTGCCAGACTGCTGACAGATTCCTTGCAAGATTTTATTTTTTTCGGTGCAGTTTGCAAATCATGGAGATCAGCCGCCACTGAGCTAAAGGAGAAAAACCCTAATAATACTGCATTGAGATTATTAACACGTCAAGTTCCTCTCCTTTTGCTTCCACTTTCTTATTGGAACCGGCTTCCTAGCTTCCTCCAGAATCCGGGGTGTGAATGGAGTCTCGTGCATCCTTTAAATCATGCCAAAATTGAGCTCCCAGATGTACAGTCTTTGCCACGCGATATTTTGTTGAGGTCAGGGAAGTTTGTCTTATCATCGAGCCCTTCTTGGACATCGGATTACATAGTCATGTTTCATTCAAGTAATAGATTAGGGTTTTGCAGACCGGGGCTGGGTGAAAATTGGAAAATAATAAATTTATGGCAACCGTTGAGGGAACTGCCTGTAATAAAGGATCTAATTTATTACAAGGACCAGTTCTATTTCTTGTACCATTCTGGTGGCGTTTCTGTTTTTGATATTGACAAAGAAGAAATGGGGCTTGTTGCTCCAAAATTTCCAGAGGAACAACTTTTAGGTCCTAATGTGCGTATTAAAGAACACTATTTAGTGGAATCAGCTGGGGTTCTATTGGTGGTTCTGTTTACTACTACCACCACCAAGTGTAAAGAGCAAGAATTATCATTTGGCTGCAGGGTCTTTGAGGTTCCATTTACAAACAGCAAATCGTGGTTGGACTCGGAGGTTAGCAGCTTGGGGAACAGAACCATTTTCCTAAGTAAATGTAGTTCTTCCTTCTCAATCGAGGCGTCAGACTATTCTGGATTATGCAAGCCCAATTGCATCTACTTCATGAATAATATGATAGTCTTTCCAAGAGAATACAGAGATATGGGTGTTTTAAATATGGAGGATGGGAAAATCACCCGAGATTTTGACAAATTCTTTAATTATGAAGAATCAAGAGGATTCCATTTATGGATTCAACCGAGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

346

Amino Acids

39.93

Weight (kDa)

5.94

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	85 - 314	5.3e-41	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	321
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	504
AcsI	RAATTY	3 cut(s)	457, 596, 983
AcuI	CTGAAG	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	851
AdeI	CACNNNGTG	1 cut(s)	705
AfaI	GTAC	3 cut(s)	20, 306, 533
AfiI	CCNNNNNNNGG	2 cut(s)	244, 434
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	402, 1028
AjiI	CACGTC	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	711, 743
AluBI	AGCT	6 cut(s)	37, 133, 231, 295, 662, 795
AluI	AGCT	6 cut(s)	37, 133, 231, 295, 662, 795
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	504
Ama87I	CYCGRG	1 cut(s)	969
ApeKI	GCWGC	2 cut(s)	732, 792
ApoI	RAATTY	3 cut(s)	457, 596, 983
AspS9I	GGNCC	2 cut(s)	514, 620
AsuC2I	CCSGG	2 cut(s)	246, 429
AsuHPI	GGTGA	2 cut(s)	449, 958
AvaI	CYCGRG	1 cut(s)	969
AvaII	GGWCC	2 cut(s)	514, 620
BanII	GRGCYC	2 cut(s)	297, 365
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	719, 804
BccI	CCATC	1 cut(s)	950
BcnI	CCSGG	2 cut(s)	246, 429
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	733
BisI	GCNGC	3 cut(s)	123, 733, 793
BlsI	GCNGC	3 cut(s)	124, 734, 794
Bme1390I	CCNGG	2 cut(s)	246, 429
Bme18I	GGWCC	2 cut(s)	514, 620
BmeT110I	CYCGRG	1 cut(s)	969
BmgBI	CACGTC	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	514, 620
BmiI	GGNNCC	2 cut(s)	218, 750
BmrFI	CCNGG	2 cut(s)	246, 429
BmsI	GCATC	2 cut(s)	277, 894
BpmI	CTGGAG	1 cut(s)	221
BpuMI	CCSGG	2 cut(s)	246, 429
BsaHI	GRCGYC	1 cut(s)	851
BsaJI	CCNNGG	2 cut(s)	245, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 434
Bse118I	RCCGGY	1 cut(s)	219
Bse1I	ACTGG	2 cut(s)	17, 517
BseDI	CCNNGG	2 cut(s)	245, 428
BseGI	GGATG	2 cut(s)	268, 961
BseLI	CCNNNNNNNGG	2 cut(s)	244, 434
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	17, 517
BseXI	GCAGC	2 cut(s)	719, 804
BseYI	CCCAGC	2 cut(s)	433, 662
BsgI	GTGCAG	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	969
BsiSI	CCGG	3 cut(s)	220, 245, 428
BsiWI	CGTACG	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	244, 434
BsmAI	GTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	969
Bsp1286I	GDGCHC	2 cut(s)	297, 365
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	116, 496
BspACI	CCGC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	894
BspLI	GGNNCC	2 cut(s)	218, 750
BspMAI	CTGCAG	1 cut(s)	737
BspPI	GGATC	1 cut(s)	504
BspQI	GCTCTTC	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	219
BsrGI	TGTACA	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	17, 517
BssAI	RCCGGY	1 cut(s)	219
BssECI	CCNNGG	2 cut(s)	245, 428
BssMI	GATC	2 cut(s)	116, 496
BssNI	GRCGYC	1 cut(s)	851
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	309, 471
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	851
BstAUI	TGTACA	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	875
BstDEI	CTNAG	2 cut(s)	129, 818
BstF5I	GGATG	2 cut(s)	268, 961
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	2 cut(s)	119, 499
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	2 cut(s)	116, 496
BstSCI	CCNGG	2 cut(s)	244, 427
BstSFI	CTRYAG	1 cut(s)	733
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	719, 804
BstX2I	RGATCY	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	496
BtrI	CACGTC	1 cut(s)	179
BtsCI	GGATG	2 cut(s)	268, 961
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	875
CciI	TCATGA	1 cut(s)	894
Cfr10I	RCCGGY	1 cut(s)	219
Cfr13I	GGNCC	2 cut(s)	514, 620
CseI	GACGC	1 cut(s)	840
Csp6I	GTAC	3 cut(s)	19, 305, 532
CviAII	CATG	4 cut(s)	111, 281, 391, 895
CviQI	GTAC	3 cut(s)	19, 305, 532
DdeI	CTNAG	2 cut(s)	129, 818
DpnI	GATC	2 cut(s)	118, 498
DpnII	GATC	2 cut(s)	116, 496
DraI	TTTAAA	2 cut(s)	276, 945
DraIII	CACNNNGTG	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	2 cut(s)	297, 365
Eco47I	GGWCC	2 cut(s)	514, 620
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	969
EcoICRI	GAGCTC	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	620
EcoT38I	GRGCYC	2 cut(s)	297, 365
FaeI	CATG	4 cut(s)	114, 284, 394, 898
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FatI	CATG	4 cut(s)	110, 280, 390, 894
Fnu4HI	GCNGC	3 cut(s)	123, 733, 793
FokI	GGATG	2 cut(s)	255, 968
FriOI	GRGCYC	2 cut(s)	297, 365
Fsp4HI	GCNGC	3 cut(s)	123, 733, 793
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	3 cut(s)	123, 733, 793
GsaI	CCCAGC	2 cut(s)	437, 666
GsuI	CTGGAG	1 cut(s)	221
HapII	CCGG	3 cut(s)	220, 245, 428
HgaI	GACGC	1 cut(s)	840
Hin1I	GRCGYC	1 cut(s)	851
Hin1II	CATG	4 cut(s)	114, 284, 394, 898
HinfI	GANTC	8 cut(s)	68, 241, 259, 656, 779, 1001, 1011, 1024
HpaII	CCGG	3 cut(s)	220, 245, 428
HphI	GGTGA	2 cut(s)	449, 958
Hpy166II	GTNNAC	1 cut(s)	687
Hpy188I	TCNGA	3 cut(s)	379, 784, 856
Hpy188III	TCNNGA	6 cut(s)	29, 238, 602, 864, 895, 1005
Hpy8I	GTNNAC	1 cut(s)	687
HpyAV	CCTTC	2 cut(s)	375, 847
HpyCH4III	ACNGT	2 cut(s)	309, 471
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	9 cut(s)	76, 98, 105, 161, 268, 423, 735, 873, 885
HpyF3I	CTNAG	2 cut(s)	129, 818
HpySE526I	ACGT	1 cut(s)	178
Hsp92I	GRCGYC	1 cut(s)	851
Hsp92II	CATG	4 cut(s)	114, 284, 394, 898
Kzo9I	GATC	2 cut(s)	116, 496
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	300, 595
Lsp1109I	GCAGC	2 cut(s)	719, 804
LweI	GCATC	2 cut(s)	277, 894
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	178
MalI	GATC	2 cut(s)	118, 498
MboI	GATC	2 cut(s)	116, 496
MboII	GAAGA	4 cut(s)	44, 584, 825, 1010
MfeI	CAATTG	1 cut(s)	880
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	297, 365
MluCI	AATT	9 cut(s)	288, 442, 457, 501, 596, 719, 880, 983, 991
MlyI	GAGTC	2 cut(s)	268, 773
MmeI	TCCRAC	1 cut(s)	756
MseI	TTAA	5 cut(s)	173, 275, 636, 944, 990
MslI	CAYNNNNRTG	2 cut(s)	389, 540
MspA1I	CMGCKG	1 cut(s)	662
MspI	CCGG	3 cut(s)	220, 245, 428
MspR9I	CCNGG	2 cut(s)	246, 429
MunI	CAATTG	1 cut(s)	880
MvnI	CGCG	1 cut(s)	321
NciI	CCSGG	2 cut(s)	246, 429
NdeII	GATC	2 cut(s)	116, 496
NlaIII	CATG	4 cut(s)	114, 284, 394, 898
NlaIV	GGNNCC	2 cut(s)	218, 750
PagI	TCATGA	1 cut(s)	894
PciSI	GCTCTTC	1 cut(s)	27
PfeI	GAWTC	6 cut(s)	68, 241, 656, 1001, 1011, 1024
Pfl23II	CGTACG	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	124, 734, 794
PleI	GAGTC	2 cut(s)	267, 773
PpsI	GAGTC	2 cut(s)	267, 773
PpuMI	RGGWCCY	1 cut(s)	620
Psp124BI	GAGCTC	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	620
PspFI	CCCAGC	2 cut(s)	433, 662
PspLI	CGTACG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	218, 750
PspPI	GGNCC	2 cut(s)	514, 620
PspPPI	RGGWCCY	1 cut(s)	620
PsrI	GAACNNNNNNTAC	2 cut(s)	814, 846
PstI	CTGCAG	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	3 cut(s)	20, 306, 533
RsaNI	GTAC	3 cut(s)	19, 305, 532
RseI	CAYNNNNRTG	2 cut(s)	389, 540
SacI	GAGCTC	1 cut(s)	297
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	5 cut(s)	173, 275, 636, 944, 990
SatI	GCNGC	3 cut(s)	123, 733, 793
Sau3AI	GATC	2 cut(s)	116, 496
Sau96I	GGNCC	2 cut(s)	514, 620
SchI	GAGTC	2 cut(s)	268, 773
ScrFI	CCNGG	2 cut(s)	246, 429
SduI	GDGCHC	2 cut(s)	297, 365
SfaNI	GCATC	2 cut(s)	277, 894
SfcI	CTRYAG	1 cut(s)	733
SinI	GGWCC	2 cut(s)	514, 620
SmiMI	CAYNNNNRTG	2 cut(s)	389, 540
Sse9I	AATT	9 cut(s)	288, 442, 457, 501, 596, 719, 880, 983, 991
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	244, 427
TaaI	ACNGT	2 cut(s)	309, 471
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	359, 846
TasI	AATT	9 cut(s)	288, 442, 457, 501, 596, 719, 880, 983, 991
TatI	WGTACW	1 cut(s)	304
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	6 cut(s)	68, 241, 656, 1001, 1011, 1024
Tru1I	TTAA	5 cut(s)	173, 275, 636, 944, 990
Tru9I	TTAA	5 cut(s)	173, 275, 636, 944, 990
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	2 cut(s)	732, 792
TspDTI	ATGAA	4 cut(s)	386, 883, 911, 1011
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	2 cut(s)	514, 620
XapI	RAATTY	3 cut(s)	457, 596, 983
XcmI	CCANNNNNNNNNTGG	1 cut(s)	210
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.