Rorug06G0210400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000399
Physical Location & Seq
Forward (+)
33479897 .. 33480225
329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0210400.1

Sequence Viewer

Length: 237 bp
ATGCTTGAGCAGGCCATACATCTTAAACAAGAGCTGTTTGACCAACTCTTAATGATGTTGTGGGCACTCTGGAAAAATAGAAATAACATGTTGTGGAATGGCACGAGTCAAACTGCAAATGATCTTGTTTTGAGCTCGCTGGCATGGCTTGAAGAGTTTAGACAAGCCAGGCAAGTTAACAAATTGCCTACTGTGCATGAAAAGCAAAGATGGAAACCAGCCTCTGATGGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

78

Amino Acids

9.3

Weight (kDa)

9.39

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 1 cut(s) 152
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 2 cut(s) 34, 135
AluI AGCT 2 cut(s) 34, 135
Alw21I GWGCWC 1 cut(s) 137
AlwNI CAGNNNCTG 1 cut(s) 224
AoxI GGCC 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 137
BauI CACGAG 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 137
BccI CCATC 2 cut(s) 204, 221
BciT130I CCWGG 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 67
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 137
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 67, 137
Bsp143I GATC 1 cut(s) 121
BspANI GGCC 1 cut(s) 14
BssMI GATC 1 cut(s) 121
BssSI CACGAG 1 cut(s) 103
Bst2BI CACGAG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 12, 137, 141
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 3 cut(s) 145, 193, 202
BstNI CCWGG 1 cut(s) 169
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 167
BstSLI GKGCMC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 14
Cac8I GCNNGC 3 cut(s) 12, 137, 141
CaiI CAGNNNCTG 1 cut(s) 224
CviAII CATG 3 cut(s) 88, 144, 197
CviJI RGCY 6 cut(s) 14, 34, 135, 148, 167, 221
CviKI_1 RGCY 6 cut(s) 14, 34, 135, 148, 167, 221
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 137
Eco53kI GAGCTC 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 3 cut(s) 91, 147, 200
FaiI YATR 4 cut(s) 17, 89, 145, 198
FatI CATG 3 cut(s) 87, 143, 196
FriOI GRGCYC 1 cut(s) 137
HaeIII GGCC 1 cut(s) 14
Hin1II CATG 3 cut(s) 91, 147, 200
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 1 cut(s) 106
HpaI GTTAAC 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 116, 196
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 193, 202
Hsp92II CATG 3 cut(s) 91, 147, 200
KspAI GTTAAC 1 cut(s) 178
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 5 cut(s) 55, 125, 154, 181, 231
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 1 cut(s) 164
MhlI GDGCHC 2 cut(s) 67, 137
MluCI AATT 1 cut(s) 182
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 1 cut(s) 232
MseI TTAA 3 cut(s) 24, 50, 177
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 3 cut(s) 145, 193, 202
NdeII GATC 1 cut(s) 121
NlaIII CATG 3 cut(s) 91, 147, 200
NspI RCATGY 1 cut(s) 91
PciI ACATGT 1 cut(s) 87
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
PscI ACATGT 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PstNI CAGNNNCTG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 137
SaqAI TTAA 3 cut(s) 24, 50, 177
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 2 cut(s) 67, 137
SetI ASST 2 cut(s) 36, 137
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 1 cut(s) 182
SstI GAGCTC 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 193
TasI AATT 1 cut(s) 182
Tru1I TTAA 3 cut(s) 24, 50, 177
Tru9I TTAA 3 cut(s) 24, 50, 177
TspDTI ATGAA 1 cut(s) 213
XceI RCATGY 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.