RLG00000012198

F-box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
16185839 .. 16186661
823 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012198

Sequence Viewer

Length: 684 bp
ATGACGACGTGTGTTTCATCTTTGGGGTGGCTGATGATTGTGTCGGGAGCTAATGGTGGCAGATGGAATCTGTTTCATCCTTTAACTCTTGCCAAAATTGAGCTCCCAGATGGAGGGGCGCATTTGCCAGGCGTTATAGAGAAGCTTGCCTTATCATCGAGCCCTTCTTGGACATCGGATTACAGCTGCGTTTCAGTGTTTGATATTGATAAAGAAGAAATAAGGGTTGTTGCACCCGAATTTCCAAAGGGACAACTTTTAGGTCCCAATGTCCGTACTTCAAATCGATATTTAGTGGAATCGGCTGGGGTTCTGTTGGTGGTTCTGTTTACTGCTAATATGACCAATTTTGAAGATGCAGCATCGACATATGGCTGCAGGGTTTTTGAGGTCCCATTTACAAACAGCAAATCATGGTCGGACTCGGAGGTTAGGAGCTTGGGGAACAGAACCATTTTCCTAAGTAAATGTAGTTCTTCCTTCTCAATCGAGGCATCAGACTATTCTGGATCATGTAAGCCCAATTCCATCTACTTCATGAATAACAAGATAGTCCTTCCGAGACAAAGCCGAGATATGGGTGTTTTTAATATGAAGGATAGGACAATCACCCGAGACTTTGACAAATTCTTTAATTATGAAGAATCGAGAGGATTCCATTTATGGATTCAACCGAGTTTGTAA

Protein Analysis

228

Amino Acids

25.34

Weight (kDa)

6.31

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 3 - 66 8.4e-06 KIB1-4 beta-propeller
Beta-prop_KIB1-4 PF03478 60 - 197 1.6e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 517
AcsI RAATTY 2 cut(s) 239, 626
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 113, 577
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 3 cut(s) 282, 353, 671
AjiI CACGTC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 5 cut(s) 50, 103, 145, 186, 438
AluI AGCT 5 cut(s) 50, 103, 145, 186, 438
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 556, 609
AlwI GGATC 1 cut(s) 517
Ama87I CYCGRG 1 cut(s) 612
ApeKI GCWGC 3 cut(s) 186, 359, 375
ApoI RAATTY 2 cut(s) 239, 626
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 263, 391
AsuHPI GGTGA 1 cut(s) 601
AvaI CYCGRG 1 cut(s) 612
AvaII GGWCC 2 cut(s) 263, 391
BanII GRGCYC 2 cut(s) 105, 164
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 173, 362, 371
BccI CCATC 3 cut(s) 57, 104, 536
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 556, 609
BfmI CTRYAG 1 cut(s) 376
BisI GCNGC 3 cut(s) 187, 360, 376
BlsI GCNGC 3 cut(s) 188, 361, 377
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 2 cut(s) 263, 391
BmeT110I CYCGRG 1 cut(s) 612
BmgBI CACGTC 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 263, 391
BmiI GGNNCC 2 cut(s) 265, 393
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 3 cut(s) 346, 371, 503
Bsa29I ATCGAT 1 cut(s) 286
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 577
BseBI CCWGG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 286
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 113, 577
BseXI GCAGC 3 cut(s) 173, 362, 371
BseYI CCCAGC 1 cut(s) 305
BshVI ATCGAT 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 612
BslFI GGGAC 3 cut(s) 249, 264, 377
BslI CCNNNNNNNGG 2 cut(s) 113, 577
BsmAI GTCTC 2 cut(s) 556, 609
BsmFI GGGAC 3 cut(s) 249, 264, 377
BsoBI CYCGRG 1 cut(s) 612
Bsp1286I GDGCHC 2 cut(s) 105, 164
Bsp143I GATC 1 cut(s) 509
BspDI ATCGAT 1 cut(s) 286
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 2 cut(s) 265, 393
BspMAI CTGCAG 1 cut(s) 380
BspPI GGATC 1 cut(s) 517
BssMI GATC 1 cut(s) 509
Bst2UI CCWGG 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 461
BstF5I GGATG 1 cut(s) 76
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 512
BstMAI GTCTC 2 cut(s) 556, 609
BstMBI GATC 1 cut(s) 509
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 376
BstV1I GCAGC 3 cut(s) 173, 362, 371
Bsu15I ATCGAT 1 cut(s) 286
BsuTUI ATCGAT 1 cut(s) 286
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 537
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 263, 391
ClaI ATCGAT 1 cut(s) 286
Csp6I GTAC 1 cut(s) 276
CviAII CATG 3 cut(s) 414, 513, 538
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 461
DpnI GATC 1 cut(s) 511
DpnII GATC 1 cut(s) 509
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 105, 164
Eco47I GGWCC 2 cut(s) 263, 391
Eco53kI GAGCTC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 612
EcoICRI GAGCTC 1 cut(s) 103
EcoO109I RGGNCCY 2 cut(s) 263, 391
EcoRII CCWGG 1 cut(s) 127
EcoT38I GRGCYC 2 cut(s) 105, 164
FaeI CATG 3 cut(s) 417, 516, 541
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 3 cut(s) 249, 264, 377
FatI CATG 3 cut(s) 413, 512, 537
FauNDI CATATG 1 cut(s) 370
Fnu4HI GCNGC 3 cut(s) 187, 360, 376
FokI GGATG 1 cut(s) 63
FriOI GRGCYC 2 cut(s) 105, 164
Fsp4HI GCNGC 3 cut(s) 187, 360, 376
GlaI GCGC 1 cut(s) 120
GluI GCNGC 3 cut(s) 187, 360, 376
GsaI CCCAGC 1 cut(s) 309
HhaI GCGC 1 cut(s) 121
Hin1II CATG 3 cut(s) 417, 516, 541
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 6 cut(s) 67, 299, 422, 644, 654, 667
HphI GGTGA 1 cut(s) 601
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 5 cut(s) 178, 421, 427, 499, 561
Hpy188III TCNNGA 4 cut(s) 45, 507, 538, 648
Hpy8I GTNNAC 1 cut(s) 330
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 174, 490, 566, 589
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 3 cut(s) 233, 359, 378
HpyF3I CTNAG 1 cut(s) 461
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 3 cut(s) 417, 516, 541
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 1 cut(s) 509
LmnI GCTCC 3 cut(s) 47, 108, 435
LpnPI CCDG 6 cut(s) 114, 120, 141, 291, 364, 492
Lsp1109I GCAGC 3 cut(s) 173, 362, 371
LweI GCATC 3 cut(s) 346, 371, 503
MaeII ACGT 1 cut(s) 8
MalI GATC 1 cut(s) 511
MboI GATC 1 cut(s) 509
MboII GAAGA 4 cut(s) 227, 365, 468, 653
MhlI GDGCHC 2 cut(s) 105, 164
MluCI AATT 6 cut(s) 96, 239, 346, 523, 626, 634
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 5 cut(s) 107, 382, 421, 484, 644
MseI TTAA 3 cut(s) 83, 588, 633
MspA1I CMGCKG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
NdeI CATATG 1 cut(s) 370
NdeII GATC 1 cut(s) 509
NlaIII CATG 3 cut(s) 417, 516, 541
NlaIV GGNNCC 2 cut(s) 265, 393
NmeAIII GCCGAG 1 cut(s) 596
PagI TCATGA 1 cut(s) 537
PfeI GAWTC 5 cut(s) 67, 299, 644, 654, 667
PkrI GCNGC 3 cut(s) 188, 361, 377
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
PpuMI RGGWCCY 2 cut(s) 263, 391
Psp124BI GAGCTC 1 cut(s) 105
Psp5II RGGWCCY 2 cut(s) 263, 391
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 265, 393
PspPI GGNCC 2 cut(s) 263, 391
PspPPI RGGWCCY 2 cut(s) 263, 391
PsrI GAACNNNNNNTAC 2 cut(s) 457, 489
PstI CTGCAG 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 186
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 3 cut(s) 83, 588, 633
SatI GCNGC 3 cut(s) 187, 360, 376
Sau3AI GATC 1 cut(s) 509
Sau96I GGNCC 2 cut(s) 263, 391
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 2 cut(s) 105, 164
SetI ASST 9 cut(s) 11, 52, 105, 147, 188, 265, 393, 432, 440
SfaNI GCATC 3 cut(s) 346, 371, 503
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 2 cut(s) 263, 391
Sse9I AATT 6 cut(s) 96, 239, 346, 523, 626, 634
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 127
TaiI ACGT 1 cut(s) 11
TaqI TCGA 5 cut(s) 158, 286, 365, 489, 647
TasI AATT 6 cut(s) 96, 239, 346, 523, 626, 634
TfiI GAWTC 5 cut(s) 67, 299, 644, 654, 667
Tru1I TTAA 3 cut(s) 83, 588, 633
Tru9I TTAA 3 cut(s) 83, 588, 633
TscAI CASTG 1 cut(s) 201
TseI GCWGC 3 cut(s) 186, 359, 375
TspDTI ATGAA 6 cut(s) 6, 65, 526, 554, 608, 654
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 201
VpaK11BI GGWCC 2 cut(s) 263, 391
XapI RAATTY 2 cut(s) 239, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.