Rroxscaffold_3G00248640

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000399
Physical Location & Seq
Forward (+)
42000247 .. 42000837
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248640.1

Sequence Viewer

Length: 591 bp
ATGGCTGTTTACAATTGGGACAGATTGGCATTTTGTAGACCGGGAGATAATGGATGGACCATGGTAGAAGAAACAAATATTGAGAGTCGTATTTACGGTGATATAACTTATTATAAGGGACAATTCTACATTGTGGATGGTTGCGGACGTGTCTTGGTTTGTCACATTGAAGACACTGAACAAGCAAGGATAAGGGTGATTATTGGTCAGTTGGTTCCTTTGAAACTTGGACATGTTGTTAGGGATTACTCTCTGGTGGAATCGAGAGGGGTCTTATTGGCAGTTCAGCATGTTTACACATTCAAGGATAGCTTCCAGGCTAATGAGTTTAGGGTTTTTGAGGTTCCATTTAGTAATGGAAATTGGTCGGACTCGGAGGTAACAAACTTAGGGAGCAGAACATTGTTCTTAGATCCAAGTTCTTCATTCTCTATTGAAGCCTCCACCGACTCTAGTTGCGAGAAGAATTGCATATACTACACAAACAATACTATTCAATCTTTCCGCAGAAAAATTGTTAGGGACTATGGTATTTTTACTATGGCAGACAATAATGAATACATACATGGGCGAATACTCAATTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

196

Amino Acids

22.51

Weight (kDa)

5.38

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 7 - 179 3.8e-32 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AccI GTMKAC 1 cut(s) 37
AciI CCGC 2 cut(s) 144, 505
AclWI GGATC 1 cut(s) 407
AflIII ACRYGT 2 cut(s) 148, 232
AgsI TTSAA 5 cut(s) 170, 223, 304, 437, 497
AjiI CACGTC 1 cut(s) 149
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
AlwI GGATC 1 cut(s) 407
AspS9I GGNCC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 110, 208
AvaII GGWCC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 177
BccI CCATC 2 cut(s) 48, 131
BciT130I CCWGG 1 cut(s) 317
BcnI CCSGG 1 cut(s) 42
BfaI CTAG 1 cut(s) 453
Bme1390I CCNGG 2 cut(s) 42, 317
Bme18I GGWCC 1 cut(s) 57
BmgBI CACGTC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 216, 345
BmrFI CCNGG 2 cut(s) 42, 317
BpiI GAAGAC 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 59, 142
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 3 cut(s) 32, 132, 536
BsmFI GGGAC 3 cut(s) 32, 132, 536
Bsp143I GATC 1 cut(s) 412
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 2 cut(s) 144, 505
BspLI GGNNCC 2 cut(s) 216, 345
BspPI GGATC 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 98
BstDEI CTNAG 2 cut(s) 388, 409
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 59, 142
BstKTI GATC 1 cut(s) 415
BstMBI GATC 1 cut(s) 412
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 2 cut(s) 236, 293
BstSCI CCNGG 2 cut(s) 40, 315
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BtgI CCRYGG 1 cut(s) 60
BtrI CACGTC 1 cut(s) 149
BtsCI GGATG 2 cut(s) 59, 142
BtsIMutI CAGTG 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 57
CviAII CATG 4 cut(s) 61, 233, 290, 566
CviJI RGCY 4 cut(s) 5, 312, 320, 440
CviKI_1 RGCY 4 cut(s) 5, 312, 320, 440
DdeI CTNAG 2 cut(s) 388, 409
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 64, 236, 293, 569
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 3 cut(s) 32, 132, 536
FatI CATG 4 cut(s) 60, 232, 289, 565
FblI GTMKAC 1 cut(s) 37
FokI GGATG 2 cut(s) 66, 149
FspBI CTAG 1 cut(s) 453
HapII CCGG 1 cut(s) 41
Hin1II CATG 4 cut(s) 64, 236, 293, 569
HinfI GANTC 4 cut(s) 85, 260, 371, 449
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 110, 208
Hpy166II GTNNAC 3 cut(s) 10, 38, 295
Hpy188I TCNGA 2 cut(s) 370, 376
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 3 cut(s) 10, 38, 295
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 471
HpyF3I CTNAG 2 cut(s) 388, 409
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 4 cut(s) 64, 236, 293, 569
Kzo9I GATC 1 cut(s) 412
LmnI GCTCC 1 cut(s) 393
LpnPI CCDG 4 cut(s) 54, 239, 302, 329
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 161, 379
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 5 cut(s) 80, 182, 414, 475, 576
MfeI CAATTG 1 cut(s) 13
MflI RGATCY 1 cut(s) 412
MluCI AATT 6 cut(s) 13, 122, 361, 466, 513, 580
MlyI GAGTC 3 cut(s) 94, 365, 443
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 4 cut(s) 260, 334, 370, 451
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 2 cut(s) 42, 317
MunI CAATTG 1 cut(s) 13
MvaI CCWGG 1 cut(s) 317
NciI CCSGG 1 cut(s) 42
NcoI CCATGG 1 cut(s) 60
NdeII GATC 1 cut(s) 412
NlaIII CATG 4 cut(s) 64, 236, 293, 569
NlaIV GGNNCC 2 cut(s) 216, 345
NmuCI GTSAC 1 cut(s) 161
NspI RCATGY 2 cut(s) 236, 293
PciI ACATGT 1 cut(s) 232
PfeI GAWTC 1 cut(s) 260
PleI GAGTC 3 cut(s) 93, 365, 443
PpsI GAGTC 3 cut(s) 93, 365, 443
PscI ACATGT 1 cut(s) 232
PsiI TTATAA 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 216, 345
PspPI GGNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 412
Sau3AI GATC 1 cut(s) 412
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 3 cut(s) 94, 365, 443
ScrFI CCNGG 2 cut(s) 42, 317
SetI ASST 4 cut(s) 151, 314, 345, 381
SinI GGWCC 1 cut(s) 57
Sse9I AATT 6 cut(s) 13, 122, 361, 466, 513, 580
SsiI CCGC 2 cut(s) 144, 505
SspI AATATT 1 cut(s) 79
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 2 cut(s) 40, 315
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 263
TasI AATT 6 cut(s) 13, 122, 361, 466, 513, 580
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 3 cut(s) 414, 570, 576
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 57
XceI RCATGY 2 cut(s) 236, 293
XmiI GTMKAC 1 cut(s) 37
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.