Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Reverse (-)

6886258 .. 6886989

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1040400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCACCCAACTTGTTGTCCAATTTTTCCATAAGGAAGTTTGTCTTATCAACCAGCCCGTCTTGGACCTCAAATTTCATTGTCATGGTTTATCAGTCTCAAACTGTATCATTTTGCAAACCAGGACACAGTGAACATTGGATAAAAGTATGTCTGCACACACCAGGAACATTAAATGATCTAACTTATTACGAGGCACAACTTTATGCCGTGAACTATTATGGTCATGTTTTTATTTGTGATATTGAAGATCCCAAGCAAGCAGAAGTAAGGATTGTTGCTCCACAATTTCCAAAGGAATATTTGGGTCCTATGATGCAAATTAAAGTAGCTTGTCTGGTGGAATCAGCCGGGGACCTGTTGGTGGTTTTGTCTTTTTTCAACCCGAAGACAAAGTTCCATTCAACTATTGGCTGCAGAGTTTTCAAGGTCCCATTTAGTGACGGCAATTCATGGTTGGACTCGGAGGTAAAGAATCTGGGTAATAGATCCCTGTTCTTGTGCATAAATGCTTCTTCTTTCTCTGTTGTGGCCTCAGACTGTTCTGGATGGAAGCCGATTTGCATTTACTTCATGAATAATGAGCGTGTTCATCTAAGAGTAGATATAGACATGGGTATCTTTAATATGGATGATGGACAAATCGAGCGGCCCTTTGATAATTCCTTTAATACCTGTTATAAAGGAAGGAATTATGAAACATCACATTTGTGGATTGAACCAAGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

244

Amino Acids

27.75

Weight (kDa)

6.15

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	7 - 209	2e-34	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	681
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	649
AciI	CCGC	1 cut(s)	649
AclWI	GGATC	2 cut(s)	245, 483
AcsI	RAATTY	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	5 cut(s)	248, 382, 405, 427, 719
AjnI	CCWGG	2 cut(s)	121, 163
AleI	CACNNNNGTG	1 cut(s)	709
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	245, 483
AoxI	GGCC	2 cut(s)	531, 650
ApeKI	GCWGC	1 cut(s)	414
ApoI	RAATTY	1 cut(s)	73
AspS9I	GGNCC	5 cut(s)	66, 308, 355, 430, 651
AsuC2I	CCSGG	1 cut(s)	352
AvaII	GGWCC	4 cut(s)	66, 308, 355, 430
BaeI	ACNNNNGTAYC	2 cut(s)	601, 634
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	2 cut(s)	543, 629
BceAI	ACGGC	2 cut(s)	194, 460
BciT130I	CCWGG	2 cut(s)	123, 165
BcnI	CCSGG	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	415
BisI	GCNGC	2 cut(s)	415, 650
BlsI	GCNGC	2 cut(s)	416, 651
Bme1390I	CCNGG	3 cut(s)	123, 165, 352
Bme18I	GGWCC	4 cut(s)	66, 308, 355, 430
BmgT120I	GGNCC	5 cut(s)	66, 308, 355, 430, 651
BmiI	GGNNCC	4 cut(s)	6, 309, 356, 432
BmrFI	CCNGG	3 cut(s)	123, 165, 352
BmsI	GCATC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
BseBI	CCWGG	2 cut(s)	123, 165
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	554, 637
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	549
BseXI	GCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	140
BshFI	GGCC	2 cut(s)	533, 652
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	2 cut(s)	368, 416
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	2 cut(s)	368, 416
BsnI	GGCC	2 cut(s)	533, 652
Bsp143I	GATC	3 cut(s)	178, 250, 488
BspACI	CCGC	1 cut(s)	649
BspANI	GGCC	2 cut(s)	533, 652
BspCNI	CTCAG	1 cut(s)	548
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	4 cut(s)	6, 309, 356, 432
BspMAI	CTGCAG	1 cut(s)	419
BspPI	GGATC	2 cut(s)	245, 483
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	649
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	178, 250, 488
Bst2UI	CCWGG	2 cut(s)	123, 165
Bst4CI	ACNGT	3 cut(s)	106, 131, 542
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	535, 596
BstF5I	GGATG	2 cut(s)	554, 637
BstKTI	GATC	3 cut(s)	181, 253, 491
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	3 cut(s)	178, 250, 488
BstNI	CCWGG	2 cut(s)	123, 165
BstSCI	CCNGG	3 cut(s)	121, 163, 350
BstSFI	CTRYAG	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	2 cut(s)	250, 488
BstYI	RGATCY	2 cut(s)	250, 488
BsuRI	GGCC	2 cut(s)	533, 652
BtsCI	GGATG	2 cut(s)	554, 637
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	261
CciI	TCATGA	1 cut(s)	573
Cfr13I	GGNCC	5 cut(s)	66, 308, 355, 430, 651
CviAII	CATG	5 cut(s)	85, 227, 453, 574, 613
CviJI	RGCY	7 cut(s)	57, 332, 350, 414, 533, 556, 652
CviKI_1	RGCY	7 cut(s)	57, 332, 350, 414, 533, 556, 652
DdeI	CTNAG	2 cut(s)	535, 596
DpnI	GATC	3 cut(s)	180, 252, 490
DpnII	GATC	3 cut(s)	178, 250, 488
Eco47I	GGWCC	4 cut(s)	66, 308, 355, 430
EcoO109I	RGGNCCY	3 cut(s)	308, 355, 430
EcoRII	CCWGG	2 cut(s)	121, 163
FaeI	CATG	5 cut(s)	88, 230, 456, 577, 616
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	2 cut(s)	368, 416
FatI	CATG	5 cut(s)	84, 226, 452, 573, 612
Fnu4HI	GCNGC	2 cut(s)	415, 650
FokI	GGATG	2 cut(s)	561, 644
Fsp4HI	GCNGC	2 cut(s)	415, 650
GluI	GCNGC	2 cut(s)	415, 650
HaeIII	GGCC	2 cut(s)	533, 652
HapII	CCGG	1 cut(s)	351
Hin1II	CATG	5 cut(s)	88, 230, 456, 577, 616
HinfI	GANTC	3 cut(s)	344, 461, 475
HpaII	CCGG	1 cut(s)	351
Hpy166II	GTNNAC	2 cut(s)	134, 214
Hpy188I	TCNGA	2 cut(s)	466, 538
Hpy188III	TCNNGA	2 cut(s)	546, 574
Hpy8I	GTNNAC	2 cut(s)	134, 214
HpyAV	CCTTC	1 cut(s)	681
HpyCH4III	ACNGT	3 cut(s)	106, 131, 542
HpyCH4V	TGCA	6 cut(s)	117, 157, 319, 417, 504, 564
HpyF3I	CTNAG	2 cut(s)	535, 596
Hsp92II	CATG	5 cut(s)	88, 230, 456, 577, 616
Kzo9I	GATC	3 cut(s)	178, 250, 488
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	3 cut(s)	180, 252, 490
MbiI	CCGCTC	1 cut(s)	649
MboI	GATC	3 cut(s)	178, 250, 488
MboII	GAAGA	3 cut(s)	260, 400, 507
MflI	RGATCY	2 cut(s)	250, 488
MluCI	AATT	7 cut(s)	22, 73, 287, 321, 448, 661, 691
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	4 cut(s)	79, 187, 460, 544
MseI	TTAA	4 cut(s)	173, 324, 624, 669
MslI	CAYNNNNRTG	2 cut(s)	83, 709
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	3 cut(s)	123, 165, 352
MvaI	CCWGG	2 cut(s)	123, 165
NciI	CCSGG	1 cut(s)	352
NdeII	GATC	3 cut(s)	178, 250, 488
NlaIII	CATG	5 cut(s)	88, 230, 456, 577, 616
NlaIV	GGNNCC	4 cut(s)	6, 309, 356, 432
NmuCI	GTSAC	1 cut(s)	440
OliI	CACNNNNGTG	1 cut(s)	709
PagI	TCATGA	1 cut(s)	573
PfeI	GAWTC	2 cut(s)	344, 475
PkrI	GCNGC	2 cut(s)	416, 651
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PpuMI	RGGWCCY	3 cut(s)	308, 355, 430
PsiI	TTATAA	1 cut(s)	681
Psp5II	RGGWCCY	3 cut(s)	308, 355, 430
Psp6I	CCWGG	2 cut(s)	121, 163
PspGI	CCWGG	2 cut(s)	121, 163
PspN4I	GGNNCC	4 cut(s)	6, 309, 356, 432
PspPI	GGNCC	5 cut(s)	66, 308, 355, 430, 651
PspPPI	RGGWCCY	3 cut(s)	308, 355, 430
PstI	CTGCAG	1 cut(s)	419
PsuI	RGATCY	2 cut(s)	250, 488
RseI	CAYNNNNRTG	2 cut(s)	83, 709
SaqAI	TTAA	4 cut(s)	173, 324, 624, 669
SatI	GCNGC	2 cut(s)	415, 650
Sau3AI	GATC	3 cut(s)	178, 250, 488
Sau96I	GGNCC	5 cut(s)	66, 308, 355, 430, 651
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	3 cut(s)	123, 165, 352
SetI	ASST	6 cut(s)	71, 334, 360, 432, 471, 677
SfaNI	GCATC	1 cut(s)	306
SfcI	CTRYAG	1 cut(s)	415
SinI	GGWCC	4 cut(s)	66, 308, 355, 430
SmiMI	CAYNNNNRTG	2 cut(s)	83, 709
Sse9I	AATT	7 cut(s)	22, 73, 287, 321, 448, 661, 691
SsiI	CCGC	1 cut(s)	649
SspI	AATATT	1 cut(s)	302
StyD4I	CCNGG	3 cut(s)	121, 163, 350
TaaI	ACNGT	3 cut(s)	106, 131, 542
TaqI	TCGA	1 cut(s)	645
TasI	AATT	7 cut(s)	22, 73, 287, 321, 448, 661, 691
TauI	GCSGC	1 cut(s)	652
TfiI	GAWTC	2 cut(s)	344, 475
Tru1I	TTAA	4 cut(s)	173, 324, 624, 669
Tru9I	TTAA	4 cut(s)	173, 324, 624, 669
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	6 cut(s)	67, 441, 562, 581, 590, 711
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	4 cut(s)	66, 308, 355, 430
XapI	RAATTY	1 cut(s)	73
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.