RchiOBHm_Chr6g0287791

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000399
Physical Location & Seq
Reverse (-)
51066071 .. 51067031
961 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25819

Sequence Viewer

Length: 936 bp
ATGCTTCCGAAGAGGATTGATGCCGCCATGGTTCAGTTTTACACCCTCGCAAAAGGTGAGATCTACAACGCCAATCTCCCAGAAATCAGTGGTAAGGTCTGCTTTGCTTCCCTGGGATGGCTGCTTACTGTAACTAGGGATCAAGGGGAATTGAAATTTAATATGCTCCACCCATCAAATCATCATGCCCAAATTCAACTTCCTGGTTTGCTGCGCTGTCCGCTCAAGAATATTTGGAAGTTTGCTTTGTCGTCCAATCCTCGTTCCACATTGGATTATATAGTCATGTTTCAGACAGCTACTACTTTGGGATTTTGCAGACCAGGACTGGGCGGCCAAGGTTGGAAACATCTCAGATTTGAGGGCCACAATTACATTAGAGATCTCACACACTATCAAGGAAGTTTCTACGTTGTGGACGAGACTGGCCGTGTTTCTGTTGTTTGTGAAATTGAAGACCCTAAGCGAGCACATTTGAGTGTTGTTGCTCCAGAGATTCCGAGTGAGGAGCAACTTCTAGGTCCTAAGAAGGGCATTAAACAGCTATATCTGGTGGAATCTGCAGGGTCCCTATTGGTGGTTTTGTGTACTTCGTACCATAATCAGTATGAATCAACTATTGGCTGCAGGGTTTTCAAGGTCCCATTCAGTAATGGCAATTCATGGTCCGACTCAGAGGTAAAGGATCTGGGTAATAGAGCCCTCTTCTTGAGTAACAGCAGTTCTTCATTCTCTATTGAGGGCTCAGGCAATTCCGGATGCAAGCCCAATTGCATATATTTCCTGAACAGCAAAAGGGTCTCTCCATTCGTTGACTTAGATGTTGGTATTTTTAATATGGAGGATGGGACAATTGATCGACACTTCAGCAATTCCTTCAATTCCGGGTTTGAAGAAATCAGAGAATCCCATCTATGGATTCAACCGAGTTTCTGA

Protein Analysis

311

Amino Acids

34.86

Weight (kDa)

6.79

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 13 - 279 2.7e-45 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 223
AccIII TCCGGA 1 cut(s) 755
AciI CCGC 3 cut(s) 24, 221, 333
AclWI GGATC 2 cut(s) 147, 693
AcoI YGGCCR 2 cut(s) 334, 427
AcsI RAATTY 2 cut(s) 155, 192
AcuI CTGAAG 1 cut(s) 850
AfaI GTAC 2 cut(s) 589, 596
AfiI CCNNNNNNNGG 5 cut(s) 117, 329, 530, 577, 915
AgsI TTSAA 7 cut(s) 154, 197, 455, 637, 880, 893, 923
AjnI CCWGG 3 cut(s) 111, 202, 322
AjuI GAANNNNNNNTTGG 4 cut(s) 183, 215, 603, 635
AluBI AGCT 2 cut(s) 299, 544
AluI AGCT 2 cut(s) 299, 544
Alw21I GWGCWC 1 cut(s) 472
Alw26I GTCTC 2 cut(s) 416, 805
AlwI GGATC 2 cut(s) 147, 693
Aor13HI TCCGGA 1 cut(s) 755
AoxI GGCC 3 cut(s) 334, 364, 427
ApeKI GCWGC 3 cut(s) 121, 211, 624
ApoI RAATTY 2 cut(s) 155, 192
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 5 cut(s) 364, 521, 567, 640, 666
AsuC2I CCSGG 1 cut(s) 886
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 4 cut(s) 521, 567, 640, 666
BanII GRGCYC 2 cut(s) 703, 746
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 3 cut(s) 108, 198, 611
BccI CCATC 4 cut(s) 111, 181, 839, 918
BceAI ACGGC 1 cut(s) 414
BciT130I CCWGG 3 cut(s) 113, 204, 324
BcnI CCSGG 1 cut(s) 886
BcoDI GTCTC 2 cut(s) 416, 805
BfaI CTAG 2 cut(s) 135, 518
BfmI CTRYAG 2 cut(s) 561, 625
BglII AGATCT 2 cut(s) 60, 382
BisI GCNGC 5 cut(s) 24, 122, 212, 334, 625
BlsI GCNGC 5 cut(s) 25, 123, 213, 335, 626
Bme1390I CCNGG 4 cut(s) 113, 204, 324, 886
Bme18I GGWCC 4 cut(s) 521, 567, 640, 666
BmgT120I GGNCC 5 cut(s) 364, 521, 567, 640, 666
BmiI GGNNCC 3 cut(s) 568, 569, 642
BmrFI CCNGG 4 cut(s) 113, 204, 324, 886
BmrI ACTGGG 1 cut(s) 338
BmsI GCATC 2 cut(s) 10, 749
BmuI ACTGGG 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 462
BpmI CTGGAG 1 cut(s) 474
Bpu10I CCTNAGC 2 cut(s) 462, 745
BpuEI CTTGAG 2 cut(s) 209, 730
BpuMI CCSGG 1 cut(s) 886
BsaI GGTCTC 1 cut(s) 805
BsaJI CCNNGG 4 cut(s) 27, 111, 112, 337
BsaWI WCCGGW 1 cut(s) 755
Bsc4I CCNNNNNNNGG 5 cut(s) 117, 329, 530, 577, 915
Bse1I ACTGG 2 cut(s) 333, 430
BseAI TCCGGA 1 cut(s) 755
BseBI CCWGG 3 cut(s) 113, 204, 324
BseDI CCNNGG 4 cut(s) 27, 111, 112, 337
BseGI GGATG 3 cut(s) 122, 764, 850
BseLI CCNNNNNNNGG 5 cut(s) 117, 329, 530, 577, 915
BseMII CTCAG 3 cut(s) 367, 687, 759
BseNI ACTGG 2 cut(s) 333, 430
BseRI GAGGAG 1 cut(s) 521
BseXI GCAGC 3 cut(s) 108, 198, 611
BshFI GGCC 3 cut(s) 336, 366, 429
BsiHKAI GWGCWC 1 cut(s) 472
BsiSI CCGG 2 cut(s) 756, 885
BslFI GGGAC 3 cut(s) 553, 626, 862
BslI CCNNNNNNNGG 5 cut(s) 117, 329, 530, 577, 915
BsmAI GTCTC 2 cut(s) 416, 805
BsmFI GGGAC 3 cut(s) 553, 626, 862
BsnI GGCC 3 cut(s) 336, 366, 429
Bso31I GGTCTC 1 cut(s) 805
Bsp1286I GDGCHC 3 cut(s) 472, 703, 746
Bsp13I TCCGGA 1 cut(s) 755
Bsp143I GATC 5 cut(s) 60, 139, 382, 685, 856
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 3 cut(s) 24, 221, 333
BspANI GGCC 3 cut(s) 336, 366, 429
BspCNI CTCAG 3 cut(s) 366, 686, 758
BspEI TCCGGA 1 cut(s) 755
BspLI GGNNCC 3 cut(s) 568, 569, 642
BspMAI CTGCAG 2 cut(s) 565, 629
BspPI GGATC 2 cut(s) 147, 693
BspTNI GGTCTC 1 cut(s) 805
BsrBI CCGCTC 1 cut(s) 223
BsrI ACTGG 2 cut(s) 333, 430
BssECI CCNNGG 4 cut(s) 27, 111, 112, 337
BssMI GATC 5 cut(s) 60, 139, 382, 685, 856
BssT1I CCWWGG 2 cut(s) 27, 337
Bst2UI CCWGG 3 cut(s) 113, 204, 324
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 2 cut(s) 5, 710
BstC8I GCNNGC 2 cut(s) 468, 764
BstDEI CTNAG 6 cut(s) 353, 462, 525, 673, 745, 817
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 122, 764, 850
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 5 cut(s) 63, 142, 385, 688, 859
BstMAI GTCTC 2 cut(s) 416, 805
BstMBI GATC 5 cut(s) 60, 139, 382, 685, 856
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 3 cut(s) 113, 204, 324
BstSCI CCNGG 4 cut(s) 111, 202, 322, 884
BstSFI CTRYAG 2 cut(s) 561, 625
BstV1I GCAGC 3 cut(s) 108, 198, 611
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 3 cut(s) 60, 382, 685
BstYI RGATCY 3 cut(s) 60, 382, 685
BsuRI GGCC 3 cut(s) 336, 366, 429
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 3 cut(s) 122, 764, 850
BtsIMutI CAGTG 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 468, 764
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 5 cut(s) 364, 521, 567, 640, 666
Csp6I GTAC 2 cut(s) 588, 595
CviAII CATG 4 cut(s) 28, 185, 286, 663
CviQI GTAC 2 cut(s) 588, 595
DdeI CTNAG 6 cut(s) 353, 462, 525, 673, 745, 817
DpnI GATC 5 cut(s) 62, 141, 384, 687, 858
DpnII GATC 5 cut(s) 60, 139, 382, 685, 856
EaeI YGGCCR 2 cut(s) 334, 427
Eam1104I CTCTTC 2 cut(s) 5, 710
EarI CTCTTC 2 cut(s) 5, 710
Eco130I CCWWGG 2 cut(s) 27, 337
Eco24I GRGCYC 2 cut(s) 703, 746
Eco31I GGTCTC 1 cut(s) 805
Eco47I GGWCC 4 cut(s) 521, 567, 640, 666
Eco57I CTGAAG 1 cut(s) 850
EcoO109I RGGNCCY 3 cut(s) 521, 567, 640
EcoRII CCWGG 3 cut(s) 111, 202, 322
EcoT14I CCWWGG 2 cut(s) 27, 337
EcoT38I GRGCYC 2 cut(s) 703, 746
ErhI CCWWGG 2 cut(s) 27, 337
FaeI CATG 4 cut(s) 31, 188, 289, 666
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FaqI GGGAC 3 cut(s) 553, 626, 862
FatI CATG 4 cut(s) 27, 184, 285, 662
Fnu4HI GCNGC 5 cut(s) 24, 122, 212, 334, 625
FokI GGATG 3 cut(s) 129, 771, 857
FriOI GRGCYC 2 cut(s) 703, 746
Fsp4HI GCNGC 5 cut(s) 24, 122, 212, 334, 625
FspBI CTAG 2 cut(s) 135, 518
GlaI GCGC 1 cut(s) 215
GluI GCNGC 5 cut(s) 24, 122, 212, 334, 625
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 3 cut(s) 336, 366, 429
HapII CCGG 2 cut(s) 756, 885
HhaI GCGC 1 cut(s) 216
Hin1II CATG 4 cut(s) 31, 188, 289, 666
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 6 cut(s) 496, 557, 611, 671, 905, 919
HpaII CCGG 2 cut(s) 756, 885
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 3 cut(s) 418, 588, 814
Hpy188I TCNGA 8 cut(s) 9, 294, 356, 501, 670, 676, 902, 935
Hpy188III TCNNGA 5 cut(s) 226, 491, 709, 756, 784
Hpy8I GTNNAC 3 cut(s) 418, 588, 814
HpyAV CCTTC 2 cut(s) 523, 886
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 5 cut(s) 318, 563, 627, 762, 774
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 6 cut(s) 353, 462, 525, 673, 745, 817
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 4 cut(s) 31, 188, 289, 666
HspAI GCGC 1 cut(s) 214
KflI GGGWCCC 1 cut(s) 567
Kpn2I TCCGGA 1 cut(s) 755
Kzo9I GATC 5 cut(s) 60, 139, 382, 685, 856
LmnI GCTCC 3 cut(s) 171, 493, 508
Lsp1109I GCAGC 3 cut(s) 108, 198, 611
LweI GCATC 2 cut(s) 10, 749
MaeI CTAG 2 cut(s) 135, 518
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 130, 713
MalI GATC 5 cut(s) 62, 141, 384, 687, 858
MbiI CCGCTC 1 cut(s) 223
MboI GATC 5 cut(s) 60, 139, 382, 685, 856
MboII GAAGA 5 cut(s) 22, 467, 697, 717, 905
MfeI CAATTG 2 cut(s) 769, 852
MflI RGATCY 3 cut(s) 60, 382, 685
MhlI GDGCHC 3 cut(s) 472, 703, 746
MlyI GAGTC 1 cut(s) 665
MmeI TCCRAC 2 cut(s) 323, 693
MnlI CCTC 9 cut(s) 6, 56, 270, 355, 499, 670, 713, 733, 835
MroI TCCGGA 1 cut(s) 755
MseI TTAA 3 cut(s) 159, 537, 834
MslI CAYNNNNRTG 1 cut(s) 477
MspI CCGG 2 cut(s) 756, 885
MspR9I CCNGG 4 cut(s) 113, 204, 324, 886
MunI CAATTG 2 cut(s) 769, 852
MvaI CCWGG 3 cut(s) 113, 204, 324
MwoI GCNNNNNNNGC 1 cut(s) 220
NciI CCSGG 1 cut(s) 886
NcoI CCATGG 1 cut(s) 27
NdeII GATC 5 cut(s) 60, 139, 382, 685, 856
NlaIII CATG 4 cut(s) 31, 188, 289, 666
NlaIV GGNNCC 3 cut(s) 568, 569, 642
PasI CCCWGGG 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PfeI GAWTC 5 cut(s) 496, 557, 611, 905, 919
PkrI GCNGC 5 cut(s) 25, 123, 213, 335, 626
PleI GAGTC 1 cut(s) 665
PpsI GAGTC 1 cut(s) 665
PpuMI RGGWCCY 3 cut(s) 521, 567, 640
Psp5II RGGWCCY 3 cut(s) 521, 567, 640
Psp6I CCWGG 3 cut(s) 111, 202, 322
PspGI CCWGG 3 cut(s) 111, 202, 322
PspN4I GGNNCC 3 cut(s) 568, 569, 642
PspPI GGNCC 5 cut(s) 364, 521, 567, 640, 666
PspPPI RGGWCCY 3 cut(s) 521, 567, 640
PsrI GAACNNNNNNTAC 2 cut(s) 706, 738
PstI CTGCAG 2 cut(s) 565, 629
PsuI RGATCY 3 cut(s) 60, 382, 685
RsaI GTAC 2 cut(s) 589, 596
RsaNI GTAC 2 cut(s) 588, 595
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 3 cut(s) 159, 537, 834
SatI GCNGC 5 cut(s) 24, 122, 212, 334, 625
Sau3AI GATC 5 cut(s) 60, 139, 382, 685, 856
Sau96I GGNCC 5 cut(s) 364, 521, 567, 640, 666
SchI GAGTC 1 cut(s) 665
ScrFI CCNGG 4 cut(s) 113, 204, 324, 886
SduI GDGCHC 3 cut(s) 472, 703, 746
SetI ASST 9 cut(s) 58, 99, 301, 343, 414, 523, 546, 642, 681
SfaNI GCATC 2 cut(s) 10, 749
SfcI CTRYAG 2 cut(s) 561, 625
SinI GGWCC 4 cut(s) 521, 567, 640, 666
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 2 cut(s) 224, 709
SmoI CTYRAG 2 cut(s) 224, 709
SsiI CCGC 3 cut(s) 24, 221, 333
SspI AATATT 1 cut(s) 232
SspMI CTAG 2 cut(s) 135, 518
StyD4I CCNGG 4 cut(s) 111, 202, 322, 884
StyI CCWWGG 2 cut(s) 27, 337
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 859
TatI WGTACW 1 cut(s) 587
TauI GCSGC 2 cut(s) 26, 336
TfiI GAWTC 5 cut(s) 496, 557, 611, 905, 919
Tru1I TTAA 3 cut(s) 159, 537, 834
Tru9I TTAA 3 cut(s) 159, 537, 834
TscAI CASTG 1 cut(s) 94
TseI GCWGC 3 cut(s) 121, 211, 624
TspDTI ATGAA 3 cut(s) 624, 651, 717
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 4 cut(s) 521, 567, 640, 666
XapI RAATTY 2 cut(s) 155, 192
XspI CTAG 2 cut(s) 135, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.