Prupe.4G213300_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000399
Physical Location & Seq
Reverse (-)
13308591 .. 13309316
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G213300.1

Sequence Viewer

Length: 576 bp
ATGGCTCAATGGTCGAATCTTCCTCACCATCTTCTTGTGTCCATTGCCAAACTTCTGTTTGTCTTGGAGGATTTTACTGTTTTTGGTACAGTTTGTAGATCATGGAAATCAGACGCAATCAAGGAAAACTTTACTAGAACATCACATCAAGTTCCATTGCTTATGCTTCCAAAAAGGGAGAGCGCCACCATCCGAGAGTTCTACAACCTGAAAAAAGGCAAGATTCACAAACTTAATCTGCCACCATTAGCTAAGGAAAAGCTGTGTTATTCTTCCCTAGGATGGCTAAAGACTCAGAAATTCACCTTATCATCAAGCGCTTCTTTCACATCAGATTACATTGTCATGATTCATAGTTGGGGCAAATTTGCGTTTTGGAGACCAGGAGACCACGAATGGACCATAGTGGATGATGCATTTGGAAAACCATATCATATTTATTCTGATTTAACTTATCATAACGGACAATTTTATGCAGTGAACGCTTCTGGCCATGTCTTTGTTTGTGAGATGGAAGAACCTAAGAAAGCAAAGATGAAACTTGTTGTTCCAAGCAGCATACCATGCTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

192

Amino Acids

21.92

Weight (kDa)

9.21

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 2 cut(s) 299, 365
AfaI GTAC 1 cut(s) 88
AfeI AGCGCT 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 282
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 2 cut(s) 251, 262
AluI AGCT 2 cut(s) 251, 262
Alw26I GTCTC 2 cut(s) 373, 381
Aor51HI AGCGCT 1 cut(s) 319
AoxI GGCC 1 cut(s) 490
ApeKI GCWGC 1 cut(s) 555
ApoI RAATTY 2 cut(s) 299, 365
AspA2I CCTAGG 1 cut(s) 277
AspLEI GCGC 2 cut(s) 185, 320
AspS9I GGNCC 1 cut(s) 399
AsuHPI GGTGA 2 cut(s) 17, 295
AvaII GGWCC 1 cut(s) 399
AvrII CCTAGG 1 cut(s) 277
BalI TGGCCA 1 cut(s) 492
BbvI GCAGC 1 cut(s) 567
BccI CCATC 4 cut(s) 36, 197, 276, 505
BciT130I CCWGG 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 373, 381
BfaI CTAG 2 cut(s) 135, 278
BfoI RGCGCY 2 cut(s) 186, 321
BisI GCNGC 1 cut(s) 556
BlnI CCTAGG 1 cut(s) 277
BlsI GCNGC 1 cut(s) 557
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 403
Bpu10I CCTNAGC 1 cut(s) 252
BsaI GGTCTC 2 cut(s) 373, 381
BsaJI CCNNGG 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse3DI GCAATG 2 cut(s) 42, 155
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 3 cut(s) 189, 287, 415
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMI GCAATG 2 cut(s) 42, 155
BseMII CTCAG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 567
BshFI GGCC 1 cut(s) 492
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 2 cut(s) 373, 381
BsnI GGCC 1 cut(s) 492
Bso31I GGTCTC 2 cut(s) 373, 381
Bsp143I GATC 1 cut(s) 98
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 1 cut(s) 307
BspHI TCATGA 1 cut(s) 345
BspTNI GGTCTC 2 cut(s) 373, 381
BsrDI GCAATG 2 cut(s) 42, 155
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 79, 91
BstAPI GCANNNNNTGC 1 cut(s) 564
BstDEI CTNAG 3 cut(s) 252, 294, 522
BstF5I GGATG 3 cut(s) 189, 287, 415
BstH2I RGCGCY 2 cut(s) 186, 321
BstHHI GCGC 2 cut(s) 185, 320
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 2 cut(s) 373, 381
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 482, 564
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 382
BstV1I GCAGC 1 cut(s) 567
BsuRI GGCC 1 cut(s) 492
BtsCI GGATG 3 cut(s) 189, 287, 415
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 483
CciI TCATGA 1 cut(s) 345
CfoI GCGC 2 cut(s) 185, 320
Cfr13I GGNCC 1 cut(s) 399
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 87
CviAII CATG 4 cut(s) 102, 346, 494, 564
CviJI RGCY 5 cut(s) 5, 251, 262, 286, 492
CviKI_1 RGCY 5 cut(s) 5, 251, 262, 286, 492
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 3 cut(s) 252, 294, 522
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 277
Eco31I GGTCTC 2 cut(s) 373, 381
Eco47I GGWCC 1 cut(s) 399
Eco47III AGCGCT 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 4 cut(s) 105, 349, 497, 567
FalI AAGNNNNNCTT 4 cut(s) 113, 145, 307, 339
FatI CATG 4 cut(s) 101, 345, 493, 563
Fnu4HI GCNGC 1 cut(s) 556
FokI GGATG 3 cut(s) 176, 294, 422
Fsp4HI GCNGC 1 cut(s) 556
FspBI CTAG 2 cut(s) 135, 278
GlaI GCGC 2 cut(s) 184, 319
GluI GCNGC 1 cut(s) 556
HaeII RGCGCY 2 cut(s) 186, 321
HaeIII GGCC 1 cut(s) 492
HgaI GACGC 1 cut(s) 122
HhaI GCGC 2 cut(s) 185, 320
Hin1II CATG 4 cut(s) 105, 349, 497, 567
Hin6I GCGC 2 cut(s) 183, 318
HinP1I GCGC 2 cut(s) 183, 318
HinfI GANTC 4 cut(s) 16, 223, 292, 349
HphI GGTGA 2 cut(s) 17, 295
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 5 cut(s) 112, 194, 297, 334, 445
Hpy188III TCNNGA 2 cut(s) 346, 573
Hpy8I GTNNAC 1 cut(s) 481
HpyCH4III ACNGT 2 cut(s) 79, 91
HpyCH4V TGCA 2 cut(s) 416, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 564
HpyF3I CTNAG 3 cut(s) 252, 294, 522
Hsp92II CATG 4 cut(s) 105, 349, 497, 567
HspAI GCGC 2 cut(s) 183, 318
Kzo9I GATC 1 cut(s) 98
LpnPI CCDG 4 cut(s) 221, 369, 396, 474
Lsp1109I GCAGC 1 cut(s) 567
LweI GCATC 1 cut(s) 403
MaeI CTAG 2 cut(s) 135, 278
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 5 cut(s) 11, 23, 264, 527, 561
MlsI TGGCCA 1 cut(s) 492
MluCI AATT 3 cut(s) 299, 365, 467
MluNI TGGCCA 1 cut(s) 492
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 2 cut(s) 33, 61
Mox20I TGGCCA 1 cut(s) 492
Mph1103I ATGCAT 1 cut(s) 418
MscI TGGCCA 1 cut(s) 492
MseI TTAA 2 cut(s) 234, 449
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 492
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 2 cut(s) 482, 564
NdeII GATC 1 cut(s) 98
NlaIII CATG 4 cut(s) 105, 349, 497, 567
NsiI ATGCAT 1 cut(s) 418
PagI TCATGA 1 cut(s) 345
PfeI GAWTC 3 cut(s) 16, 223, 349
PkrI GCNGC 1 cut(s) 557
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspPI GGNCC 1 cut(s) 399
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 2 cut(s) 234, 449
SatI GCNGC 1 cut(s) 556
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 1 cut(s) 399
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 384
SetI ASST 5 cut(s) 210, 253, 264, 308, 523
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 3 cut(s) 299, 365, 467
SspMI CTAG 2 cut(s) 135, 278
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 79, 91
TaqI TCGA 1 cut(s) 14
TasI AATT 3 cut(s) 299, 365, 467
TfiI GAWTC 3 cut(s) 16, 223, 349
Tru1I TTAA 2 cut(s) 234, 449
Tru9I TTAA 2 cut(s) 234, 449
TscAI CASTG 1 cut(s) 483
TseI GCWGC 1 cut(s) 555
TspDTI ATGAA 2 cut(s) 341, 551
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 1 cut(s) 483
VpaK11BI GGWCC 1 cut(s) 399
XapI RAATTY 2 cut(s) 299, 365
XmaJI CCTAGG 1 cut(s) 277
XspI CTAG 2 cut(s) 135, 278
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.