Rw7G015310

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000399
Physical Location & Seq
Forward (+)
15403030 .. 15404041
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G015310.1

Sequence Viewer

Length: 891 bp
ATGGCTGACTGGTCGAATCTACCGCAAGATCTTCTCATCTCTGTCGCGAAACGGGCGGATTCCATGGAGGATGTTTTTCCTTTTAGTGGTGTATGTAAATCATGGAGAGATCAGTTGCAACGAAGGAAAATTTTATTAAGCACCAATGAGCTTTACAACTTGACAAAAGGCAAAATTTCCGAAGCTCACATGCCGGAATCTATGGGGAAACGATACTATTCTTCTTCTTTGGGACGGGTTATGACTTCATCTATTGAAGATATGAAAGTTAGTCTGTTTAATCCTTTCAAAATGCATTCTCAGATTCAGTTGCCAGATATTGACAGAATTAAATGGGACGACGGGAACGGCCAGTATTTTATTATGAAAAAGTTTGTCTCAACATCAAGTCCTTCTTGGACATCTGATTACATAATCATGGTACTTGGTAAACACAGAACATTAGTATTTTGCAGACCAGGAGACAATCAATGGACATCCATCAATACAAGTAAGCGCAGGATGTACTGGGATGACATAACTCACTATAAGGGAAAGTTTTACGTGGTAGGAGGTTATGGCACCATCTTTGTTTTTATAGTTACAGTTTCAGAGATGCCTAGACATATTCTCCTTCCTGGTAGTATTTTTGAGCAAATTTACCTTGTGGAATCTGCAGAGGACTTATTGGTGGTTTCGCGTTTTAATGGTGATATGTATAATCTAACGGCTTTCAAGGTGCCATTGAGTAATGGCATGTGGTCAGACTCATTAGAGGTATGTGATTTGGGGAACAGAACCTTGTTCATCGATAGCAGATCCAACCACTCTGAATGCAAAACCAATTGCATATACTTCACGCATCTGAGTACTTATAATATGAAAGATGGGAAATTTGAACCACAACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

296

Amino Acids

34.25

Weight (kDa)

8.47

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 51 - 284 1.3e-38 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 855
AccB1I GGYRCC 2 cut(s) 560, 718
AccII CGCG 2 cut(s) 47, 679
AciI CCGC 2 cut(s) 23, 56
AclI AACGTT 1 cut(s) 886
AclWI GGATC 1 cut(s) 792
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 4 cut(s) 129, 174, 636, 872
AfaI GTAC 3 cut(s) 423, 506, 850
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 4 cut(s) 257, 289, 715, 878
AjnI CCWGG 2 cut(s) 457, 616
AluBI AGCT 2 cut(s) 151, 185
AluI AGCT 2 cut(s) 151, 185
Alw26I GTCTC 2 cut(s) 382, 456
AlwI GGATC 1 cut(s) 792
AoxI GGCC 1 cut(s) 349
ApoI RAATTY 4 cut(s) 129, 174, 636, 872
AspLEI GCGC 1 cut(s) 498
AsuHPI GGTGA 1 cut(s) 701
BanI GGYRCC 2 cut(s) 560, 718
BccI CCATC 3 cut(s) 488, 572, 860
BceAI ACGGC 2 cut(s) 364, 723
BciT130I CCWGG 2 cut(s) 459, 618
BcoDI GTCTC 2 cut(s) 382, 456
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 654
BglII AGATCT 1 cut(s) 28
BmcAI AGTACT 1 cut(s) 850
Bme1390I CCNGG 2 cut(s) 459, 618
BmiI GGNNCC 2 cut(s) 562, 720
BmrFI CCNGG 2 cut(s) 459, 618
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 2 cut(s) 585, 850
BmuI ACTGGG 1 cut(s) 517
Bsa29I ATCGAT 1 cut(s) 789
BsaAI YACGTR 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 3 cut(s) 14, 352, 512
BseBI CCWGG 2 cut(s) 459, 618
BseCI ATCGAT 1 cut(s) 789
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 4 cut(s) 76, 476, 507, 517
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMII CTCAG 2 cut(s) 314, 836
BseNI ACTGG 3 cut(s) 14, 352, 512
Bsh1236I CGCG 2 cut(s) 47, 679
BshFI GGCC 1 cut(s) 351
BshNI GGYRCC 2 cut(s) 560, 718
BshVI ATCGAT 1 cut(s) 789
BsiSI CCGG 1 cut(s) 194
BslFI GGGAC 2 cut(s) 246, 350
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 2 cut(s) 382, 456
BsmFI GGGAC 2 cut(s) 246, 350
BsmI GAATGC 2 cut(s) 295, 818
BsnI GGCC 1 cut(s) 351
Bsp143I GATC 3 cut(s) 28, 109, 797
Bsp19I CCATGG 1 cut(s) 63
Bsp68I TCGCGA 1 cut(s) 47
BspACI CCGC 2 cut(s) 23, 56
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 2 cut(s) 313, 837
BspDI ATCGAT 1 cut(s) 789
BspFNI CGCG 2 cut(s) 47, 679
BspLI GGNNCC 2 cut(s) 562, 720
BspMAI CTGCAG 1 cut(s) 658
BspPI GGATC 1 cut(s) 792
BspT107I GGYRCC 2 cut(s) 560, 718
BsrI ACTGG 3 cut(s) 14, 352, 512
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 28, 109, 797
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 459, 618
Bst4CI ACNGT 1 cut(s) 586
BstBAI YACGTR 1 cut(s) 544
BstDEI CTNAG 2 cut(s) 300, 845
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 4 cut(s) 76, 476, 507, 517
BstFNI CGCG 2 cut(s) 47, 679
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 3 cut(s) 31, 112, 800
BstMAI GTCTC 2 cut(s) 382, 456
BstMBI GATC 3 cut(s) 28, 109, 797
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 2 cut(s) 459, 618
BstNSI RCATGY 2 cut(s) 193, 739
BstSCI CCNGG 2 cut(s) 457, 616
BstSFI CTRYAG 1 cut(s) 654
BstUI CGCG 2 cut(s) 47, 679
BstX2I RGATCY 2 cut(s) 28, 797
BstYI RGATCY 2 cut(s) 28, 797
Bsu15I ATCGAT 1 cut(s) 789
BsuRI GGCC 1 cut(s) 351
BsuTUI ATCGAT 1 cut(s) 789
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 4 cut(s) 76, 476, 507, 517
BtuMI TCGCGA 1 cut(s) 47
CfoI GCGC 1 cut(s) 498
ClaI ATCGAT 1 cut(s) 789
Csp6I GTAC 3 cut(s) 422, 505, 849
CviAII CATG 5 cut(s) 64, 102, 190, 418, 736
CviJI RGCY 5 cut(s) 5, 151, 185, 351, 710
CviKI_1 RGCY 5 cut(s) 5, 151, 185, 351, 710
CviQI GTAC 3 cut(s) 422, 505, 849
DdeI CTNAG 2 cut(s) 300, 845
DpnI GATC 3 cut(s) 30, 111, 799
DpnII GATC 3 cut(s) 28, 109, 797
EaeI YGGCCR 1 cut(s) 349
EciI GGCGGA 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 63
EcoRII CCWGG 2 cut(s) 457, 616
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 5 cut(s) 67, 105, 193, 421, 739
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FaqI GGGAC 2 cut(s) 246, 350
FatI CATG 5 cut(s) 63, 101, 189, 417, 735
FokI GGATG 4 cut(s) 83, 463, 514, 524
FspBI CTAG 1 cut(s) 600
GlaI GCGC 1 cut(s) 497
HaeIII GGCC 1 cut(s) 351
HapII CCGG 1 cut(s) 194
HhaI GCGC 1 cut(s) 498
Hin1II CATG 5 cut(s) 67, 105, 193, 421, 739
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HinfI GANTC 6 cut(s) 16, 59, 197, 304, 650, 746
HpaII CCGG 1 cut(s) 194
HphI GGTGA 1 cut(s) 701
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 7 cut(s) 181, 303, 406, 592, 745, 811, 846
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 431
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 3 cut(s) 117, 402, 623
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4IV ACGT 2 cut(s) 543, 886
HpyCH4V TGCA 6 cut(s) 118, 295, 453, 656, 816, 828
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 300, 845
HpySE526I ACGT 2 cut(s) 543, 886
Hsp92II CATG 5 cut(s) 67, 105, 193, 421, 739
HspAI GCGC 1 cut(s) 496
Kzo9I GATC 3 cut(s) 28, 109, 797
LpnPI CCDG 9 cut(s) 207, 327, 365, 444, 471, 484, 493, 603, 630
LweI GCATC 2 cut(s) 585, 850
MaeI CTAG 1 cut(s) 600
MaeII ACGT 2 cut(s) 543, 886
MaeIII GTNAC 1 cut(s) 580
MalI GATC 3 cut(s) 30, 111, 799
MboI GATC 3 cut(s) 28, 109, 797
MboII GAAGA 4 cut(s) 23, 213, 216, 269
MfeI CAATTG 1 cut(s) 823
MflI RGATCY 2 cut(s) 28, 797
MluCI AATT 6 cut(s) 129, 174, 327, 636, 823, 872
MlyI GAGTC 1 cut(s) 740
MmeI TCCRAC 1 cut(s) 825
MnlI CCTC 4 cut(s) 61, 545, 652, 748
Mph1103I ATGCAT 1 cut(s) 297
MseI TTAA 5 cut(s) 137, 279, 330, 684, 889
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 459, 618
MunI CAATTG 1 cut(s) 823
Mva1269I GAATGC 2 cut(s) 295, 818
MvaI CCWGG 2 cut(s) 459, 618
MvnI CGCG 2 cut(s) 47, 679
MwoI GCNNNNNNNGC 1 cut(s) 53
NcoI CCATGG 1 cut(s) 63
NdeII GATC 3 cut(s) 28, 109, 797
NlaIII CATG 5 cut(s) 67, 105, 193, 421, 739
NlaIV GGNNCC 2 cut(s) 562, 720
NruI TCGCGA 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 297
NspI RCATGY 2 cut(s) 193, 739
PctI GAATGC 2 cut(s) 295, 818
PfeI GAWTC 5 cut(s) 16, 59, 197, 304, 650
PleI GAGTC 1 cut(s) 740
PpsI GAGTC 1 cut(s) 740
Ppu21I YACGTR 1 cut(s) 544
PsiI TTATAA 1 cut(s) 855
Psp1406I AACGTT 1 cut(s) 886
Psp6I CCWGG 2 cut(s) 457, 616
PspGI CCWGG 2 cut(s) 457, 616
PspN4I GGNNCC 2 cut(s) 562, 720
PstI CTGCAG 1 cut(s) 658
PsuI RGATCY 2 cut(s) 28, 797
RruI TCGCGA 1 cut(s) 47
RsaI GTAC 3 cut(s) 423, 506, 850
RsaNI GTAC 3 cut(s) 422, 505, 849
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 5 cut(s) 137, 279, 330, 684, 889
Sau3AI GATC 3 cut(s) 28, 109, 797
ScaI AGTACT 1 cut(s) 850
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 2 cut(s) 459, 618
SetI ASST 9 cut(s) 153, 187, 546, 556, 645, 720, 759, 782, 889
SfaNI GCATC 2 cut(s) 585, 850
SfcI CTRYAG 1 cut(s) 654
SmiMI CAYNNNNRTG 1 cut(s) 416
Sse9I AATT 6 cut(s) 129, 174, 327, 636, 823, 872
SsiI CCGC 2 cut(s) 23, 56
SspMI CTAG 1 cut(s) 600
StyD4I CCNGG 2 cut(s) 457, 616
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 586
TaiI ACGT 2 cut(s) 546, 889
TaqI TCGA 2 cut(s) 14, 789
TasI AATT 6 cut(s) 129, 174, 327, 636, 823, 872
TatI WGTACW 2 cut(s) 504, 848
TfiI GAWTC 5 cut(s) 16, 59, 197, 304, 650
Tru1I TTAA 5 cut(s) 137, 279, 330, 684, 889
Tru9I TTAA 5 cut(s) 137, 279, 330, 684, 889
TspDTI ATGAA 5 cut(s) 237, 278, 380, 775, 875
XapI RAATTY 4 cut(s) 129, 174, 636, 872
XceI RCATGY 2 cut(s) 193, 739
XspI CTAG 1 cut(s) 600
ZrmI AGTACT 1 cut(s) 850
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.