Rh6DG299100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000399
Physical Location & Seq
Reverse (-)
50042571 .. 50043934
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG299100.1

Sequence Viewer

Length: 240 bp
ATGGCTACCGGGTGGTGCGATTCTCTTCAGAATTACCTTGTCTCTCTCGGCGAAAGGCTGGCAGTTTTCTGGAACAAGTTTATCACTGCAGTGCGGAAATCATTCGGCGCTGATCAAGTTCCTCTTCTTATGCTTCCAAAGAGGATTGATGACGCCATGGTTCAGTTTTACACCCTCGCAAAAGGTGAGATCTACAACGCCAATCTCCCAGAAATCAGTGGCTTTACCGTGCAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.92

Weight (kDa)

6.08

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 153
AleI CACNNNNGTG 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 110
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 197
BclI TGATCA 1 cut(s) 112
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 111
BglII AGATCT 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 10
BpuMI CCSGG 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 112, 189
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 112, 189
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 30, 129
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 115, 192
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 2 cut(s) 112, 189
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 156
BtsI GCAGTG 2 cut(s) 84, 96
BtsIMutI CAGTG 3 cut(s) 84, 96, 223
Cac8I GCNNGC 1 cut(s) 60
CfoI GCGC 1 cut(s) 110
CseI GACGC 1 cut(s) 161
CviAII CATG 1 cut(s) 157
CviJI RGCY 3 cut(s) 5, 58, 222
CviKI_1 RGCY 3 cut(s) 5, 58, 222
DpnI GATC 2 cut(s) 114, 191
DpnII GATC 2 cut(s) 112, 189
Eam1104I CTCTTC 2 cut(s) 30, 129
EarI CTCTTC 2 cut(s) 30, 129
Eco130I CCWWGG 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 160
FaiI YATR 2 cut(s) 131, 158
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FatI CATG 1 cut(s) 156
FbaI TGATCA 1 cut(s) 112
GlaI GCGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 111
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 89, 232
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 2 cut(s) 112, 189
LpnPI CCDG 4 cut(s) 22, 44, 55, 222
MalI GATC 2 cut(s) 114, 191
MboI GATC 2 cut(s) 112, 189
MboII GAAGA 2 cut(s) 17, 116
MflI RGATCY 1 cut(s) 189
MluCI AATT 1 cut(s) 31
MnlI CCTC 3 cut(s) 132, 135, 185
MroXI GAANNNNTTC 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 10
NciI CCSGG 1 cut(s) 10
NcoI CCATGG 1 cut(s) 156
NdeII GATC 2 cut(s) 112, 189
NlaIII CATG 1 cut(s) 160
NmeAIII GCCGAG 1 cut(s) 27
OliI CACNNNNGTG 1 cut(s) 89
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 20
PstI CTGCAG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 89
Sau3AI GATC 2 cut(s) 112, 189
ScrFI CCNGG 1 cut(s) 10
SetI ASST 2 cut(s) 39, 187
SfcI CTRYAG 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 89
Sse9I AATT 1 cut(s) 31
SsiI CCGC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 229
TasI AATT 1 cut(s) 31
TfiI GAWTC 1 cut(s) 20
TscAI CASTG 3 cut(s) 91, 96, 223
TspRI CASTG 3 cut(s) 91, 96, 223
XmnI GAANNNNTTC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.