RLG00000012196

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000399
Physical Location & Seq
Reverse (-)
16175623 .. 16176666
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012196

Sequence Viewer

Length: 909 bp
ATGAACAAGAACAACTTTACTGGTGGGTTGCGACATCAAGTCCCCTTCGTTCTTCTTCCAAAGCACTACCTCGTTTCCATTCGTAAGTTTTACAGCCTCACAAAAGGTAGGGTTTACAAGCTCAAGCTGCCAAGAACTAGGAGAAAGCTGTGCTTTTCTTGTCTGGGATGGCTAGTGACCGTATCTGAAGGATTCACCATTACTCTGTTGCATCTGCTAAATCATCATGCCCCGATTAAGTTGCCACACCCTCAGATAATTAAAACTGATATGAGAGATTTTAAGAACTTAGATGTAGAGAAGGTTGTCTTATCGTCCAGCCCTTCTTCGACATTGGATTACACGGTCATGGTTTTTTATAAAGTTTGTAGTCTGGCTTTTTGTAGACCGGGACAGAGTGAAAATTGGACCAAAGTTTTGACTCCTGTGCCTCCTTTGACCAATATAGTAGATTTAGCTTACTATAAGGGACAATTCTACGTGTTGACCACTGACTGCAAAATTTTGATCTGTGACATTAAAAACCCTAAGCAAGCAAAGACAATGGTTGTTGCTCAGGTCGTGCCACGAGACCAAGTAGACATACTGTTGTGGAATTCTAAGGCACAATATCTTGTGGAGTCAGCAGAGTCCCTGTTCGTGGTTTTCGGTTTTCGTAACAGGCCGCAAGATTCCTCAGACGATGATACAACATCGGCATGCTGGTTAACTACCAAATTTAGGGTTTTCGAGGTCTATAATGGTAATTCGTGGTCGACTTCGGAGGTAAAGAATTTGGGGGGTAGAACCTTGTTCCTAGGCGACAAAAGTCGTTCCTTCTTCATTGAGGAAAATACTCTATGCAAGCCCAATTGCATATACTTCTTGAATAACTATTTCGTCAGAAGAGACGCAGCCGACATAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

303

Amino Acids

34.67

Weight (kDa)

9.37

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 30 - 290 9.5e-45 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AccI GTMKAC 3 cut(s) 385, 579, 755
AciI CCGC 1 cut(s) 665
AcsI RAATTY 4 cut(s) 501, 595, 716, 772
AcuI CTGAAG 1 cut(s) 207
AfiI CCNNNNNNNGG 2 cut(s) 640, 720
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 1 cut(s) 868
AhdI GACNNNNNGTC 1 cut(s) 38
AluBI AGCT 4 cut(s) 121, 127, 148, 458
AluI AGCT 4 cut(s) 121, 127, 148, 458
Alw26I GTCTC 2 cut(s) 564, 882
AoxI GGCC 1 cut(s) 662
ApeKI GCWGC 2 cut(s) 127, 893
ApoI RAATTY 4 cut(s) 501, 595, 716, 772
ArsI GACNNNNNNTTYG 2 cut(s) 400, 432
AspA2I CCTAGG 1 cut(s) 796
AspS9I GGNCC 1 cut(s) 408
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 408
AvrII CCTAGG 1 cut(s) 796
BauI CACGAG 1 cut(s) 567
BbvI GCAGC 2 cut(s) 114, 905
BccI CCATC 1 cut(s) 162
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 2 cut(s) 564, 882
BfaI CTAG 3 cut(s) 138, 173, 797
BisI GCNGC 3 cut(s) 128, 665, 894
BlnI CCTAGG 1 cut(s) 796
BlsI GCNGC 3 cut(s) 129, 666, 895
Bme1390I CCNGG 1 cut(s) 390
Bme18I GGWCC 1 cut(s) 408
BmeRI GACNNNNNGTC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 220
BoxI GACNNNNGTC 1 cut(s) 807
Bpu10I CCTNAGC 2 cut(s) 528, 555
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 390
BsaAI YACGTR 1 cut(s) 481
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 1 cut(s) 796
Bsc4I CCNNNNNNNGG 2 cut(s) 640, 720
Bse1I ACTGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 796
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 2 cut(s) 640, 720
BseMII CTCAG 3 cut(s) 266, 569, 690
BseNI ACTGG 1 cut(s) 25
BseXI GCAGC 2 cut(s) 114, 905
BshFI GGCC 1 cut(s) 664
BsiSI CCGG 1 cut(s) 389
BslFI GGGAC 4 cut(s) 26, 405, 483, 616
BslI CCNNNNNNNGG 2 cut(s) 640, 720
BsmAI GTCTC 2 cut(s) 564, 882
BsmBI CGTCTC 1 cut(s) 882
BsmFI GGGAC 4 cut(s) 26, 405, 483, 616
BsnI GGCC 1 cut(s) 664
Bso31I GGTCTC 1 cut(s) 564
Bsp143I GATC 1 cut(s) 507
BspACI CCGC 1 cut(s) 665
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 3 cut(s) 265, 568, 689
BspTNI GGTCTC 1 cut(s) 564
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 796
BssMI GATC 1 cut(s) 507
BssSI CACGAG 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 796
Bst2BI CACGAG 1 cut(s) 567
Bst4CI ACNGT 3 cut(s) 181, 346, 588
Bst6I CTCTTC 1 cut(s) 880
BstBAI YACGTR 1 cut(s) 481
BstC8I GCNNGC 3 cut(s) 534, 700, 845
BstDEI CTNAG 6 cut(s) 252, 289, 528, 555, 600, 676
BstF5I GGATG 1 cut(s) 173
BstKTI GATC 1 cut(s) 510
BstMAI GTCTC 2 cut(s) 564, 882
BstMBI GATC 1 cut(s) 507
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNSI RCATGY 1 cut(s) 702
BstPAI GACNNNNGTC 1 cut(s) 807
BstSCI CCNGG 1 cut(s) 388
BstV1I GCAGC 2 cut(s) 114, 905
BsuRI GGCC 1 cut(s) 664
BtsCI GGATG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 3 cut(s) 534, 700, 845
Cfr13I GGNCC 1 cut(s) 408
CseI GACGC 1 cut(s) 899
CviAII CATG 3 cut(s) 227, 349, 699
DdeI CTNAG 6 cut(s) 252, 289, 528, 555, 600, 676
DpnI GATC 1 cut(s) 509
DpnII GATC 1 cut(s) 507
DriI GACNNNNNGTC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 880
Eam1105I GACNNNNNGTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 880
Eco130I CCWWGG 1 cut(s) 796
Eco31I GGTCTC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 796
ErhI CCWWGG 1 cut(s) 796
Esp3I CGTCTC 1 cut(s) 882
FaeI CATG 3 cut(s) 230, 352, 702
FalI AAGNNNNNCTT 5 cut(s) 31, 137, 169, 293, 325
FaqI GGGAC 4 cut(s) 26, 405, 483, 616
FatI CATG 3 cut(s) 226, 348, 698
FblI GTMKAC 3 cut(s) 385, 579, 755
Fnu4HI GCNGC 3 cut(s) 128, 665, 894
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 128, 665, 894
FspBI CTAG 3 cut(s) 138, 173, 797
GluI GCNGC 3 cut(s) 128, 665, 894
HaeIII GGCC 1 cut(s) 664
HapII CCGG 1 cut(s) 389
HgaI GACGC 1 cut(s) 899
Hin1II CATG 3 cut(s) 230, 352, 702
HincII GTYRAC 3 cut(s) 486, 708, 756
HindII GTYRAC 3 cut(s) 486, 708, 756
HinfI GANTC 5 cut(s) 192, 421, 620, 629, 671
HpaI GTTAAC 1 cut(s) 708
HpaII CCGG 1 cut(s) 389
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 6 cut(s) 115, 386, 486, 580, 708, 756
Hpy188I TCNGA 5 cut(s) 187, 255, 679, 763, 884
Hpy188III TCNNGA 1 cut(s) 865
Hpy8I GTNNAC 6 cut(s) 115, 386, 486, 580, 708, 756
HpyAV CCTTC 5 cut(s) 55, 182, 295, 333, 826
HpyCH4III ACNGT 3 cut(s) 181, 346, 588
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 4 cut(s) 211, 498, 843, 855
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 6 cut(s) 252, 289, 528, 555, 600, 676
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 3 cut(s) 230, 352, 702
KspAI GTTAAC 1 cut(s) 708
Kzo9I GATC 1 cut(s) 507
Lsp1109I GCAGC 2 cut(s) 114, 905
LweI GCATC 1 cut(s) 220
MaeI CTAG 3 cut(s) 138, 173, 797
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 3 cut(s) 175, 512, 656
MalI GATC 1 cut(s) 509
MboI GATC 1 cut(s) 507
MboII GAAGA 5 cut(s) 44, 47, 318, 811, 897
MfeI CAATTG 1 cut(s) 850
MluCI AATT 9 cut(s) 258, 403, 473, 501, 595, 716, 745, 772, 850
MlyI GAGTC 3 cut(s) 415, 629, 638
MnlI CCTC 8 cut(s) 80, 107, 261, 441, 685, 724, 757, 820
MseI TTAA 5 cut(s) 237, 261, 282, 519, 707
MslI CAYNNNNRTG 2 cut(s) 347, 697
MspI CCGG 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 390
MunI CAATTG 1 cut(s) 850
MwoI GCNNNNNNNGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 390
NdeII GATC 1 cut(s) 507
NlaIII CATG 3 cut(s) 230, 352, 702
NmuCI GTSAC 2 cut(s) 175, 512
NspI RCATGY 1 cut(s) 702
PaeI GCATGC 1 cut(s) 702
PfeI GAWTC 2 cut(s) 192, 671
PkrI GCNGC 3 cut(s) 129, 666, 895
PleI GAGTC 3 cut(s) 415, 628, 637
PpsI GAGTC 3 cut(s) 415, 628, 637
Ppu21I YACGTR 1 cut(s) 481
PshAI GACNNNNGTC 1 cut(s) 807
PsiI TTATAA 1 cut(s) 360
PspPI GGNCC 1 cut(s) 408
RseI CAYNNNNRTG 2 cut(s) 347, 697
SalI GTCGAC 1 cut(s) 754
SaqAI TTAA 5 cut(s) 237, 261, 282, 519, 707
SatI GCNGC 3 cut(s) 128, 665, 894
Sau3AI GATC 1 cut(s) 507
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 3 cut(s) 415, 629, 638
ScrFI CCNGG 1 cut(s) 390
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 347, 697
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SphI GCATGC 1 cut(s) 702
Sse9I AATT 9 cut(s) 258, 403, 473, 501, 595, 716, 745, 772, 850
SsiI CCGC 1 cut(s) 665
SspMI CTAG 3 cut(s) 138, 173, 797
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 1 cut(s) 796
TaaI ACNGT 3 cut(s) 181, 346, 588
TaiI ACGT 1 cut(s) 483
TaqI TCGA 3 cut(s) 329, 729, 755
TasI AATT 9 cut(s) 258, 403, 473, 501, 595, 716, 745, 772, 850
TauI GCSGC 1 cut(s) 667
TfiI GAWTC 2 cut(s) 192, 671
Tru1I TTAA 5 cut(s) 237, 261, 282, 519, 707
Tru9I TTAA 5 cut(s) 237, 261, 282, 519, 707
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 2 cut(s) 175, 512
TseI GCWGC 2 cut(s) 127, 893
Tsp45I GTSAC 2 cut(s) 175, 512
TspDTI ATGAA 2 cut(s) 17, 811
TspRI CASTG 1 cut(s) 496
VpaK11BI GGWCC 1 cut(s) 408
XapI RAATTY 4 cut(s) 501, 595, 716, 772
XceI RCATGY 1 cut(s) 702
XmaJI CCTAGG 1 cut(s) 796
XmiI GTMKAC 3 cut(s) 385, 579, 755
XspI CTAG 3 cut(s) 138, 173, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.