Rw7G014700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000399
Physical Location & Seq
Forward (+)
14411255 .. 14412361
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G014700.1

Sequence Viewer

Length: 1107 bp
ATGGCTGACTGGTCTGATCTTCCCCAGGATCTTGTTGTGTGTATCTGCCAAAGGATGGATTCCATGCAAGACTTCATCACTTTCGGCGCAGTCTGTAAAACATGGAGTTCTGCCGCCACCAAAGATAACTTTACTCGTGGGTTTACACATCAAGTTCCACTGCTTATCATGCCAGATACAGAGGACAATAATAGTCTTTTTCCCGGCCAGTGTTACAACCTCATAAAAGGTAAAGTTTCCAGACTTAATATACCAAAGACTATCACTCAACGTCGTCTAATGCCCCGCTGTAGGTCTTCTCTTGGATGGCTCATCACCGCCTCATCTAGATTTTTGACTGATGATTCCAGACATATATATCTGTTGCATCCTTTCAAACATGAAGAAATTGTGCTGCCAACCTTTGGGTTTGAGTTTAGGTTTATAAAGAAGTTTGTCTTATCATCTAGTCCTTCTCTGACATCAGATAACATAGTCATGGTTTCTACTTGGTCCAATAGAAAGTTCGCTTTCTGGAGACCGAAGGACAATGGATGGACTACAATATCATCAGAACTAAATAATTGGGAATCAGAGACACGATCATATGATATAGCTTATTACAAAGGACAATTTTATATTGTTGAATGGGATGGCCGTGTGTTGGTTTGTGACATTGATGACCCGAACAAAGCAGCAGCAAAGTTGGTTGTTTCAGAGATGCCAAATAATCTACTGTCTAATGATAGCGTACAGCAATTGTACCTGGTGGAATCAGGTGGCGCCTTACTGTTGGTTTTCCGGCTCAAGAACACTTCTCGAAATGGGTTTAGGGTTTTTGAGGTGCCACTTAGTACTGGCAATTGGTTGGACGCGAAGGAGGTAGAGAACTTGGGGAATCGAGCCTTGTTTTTGAGTTTAAGCAATTCTTCATTCTCTATCGAGGTCTCAAACTACTCTGGGTGTAAGGCCAATTGCATATACTTTGCACGTCATCTTCTTTCTGAATGCACTCCGACCTGTACAGATCTCGGTATTTTTGGTATGAAAGATGGAGAGGTCGAACCATTCACACCTAAATCCTGTCGCGTTCAACAACCATATGTATGGACTCAGTGGACTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

368

Amino Acids

42.07

Weight (kDa)

6.94

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 45 1.5e-06 F-box domain
Beta-prop_KIB1-4 PF03478 72 - 339 6.8e-53 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
AccB1I GGYRCC 2 cut(s) 761, 823
AccB7I CCANNNNNTGG 2 cut(s) 55, 404
AccII CGCG 2 cut(s) 854, 1068
AciI CCGC 3 cut(s) 114, 286, 318
AclWI GGATC 1 cut(s) 36
AcoI YGGCCR 2 cut(s) 205, 634
AcyI GRCGYC 1 cut(s) 762
AfaI GTAC 4 cut(s) 732, 743, 835, 1003
AfiI CCNNNNNNNGG 4 cut(s) 55, 291, 404, 643
AgsI TTSAA 3 cut(s) 376, 626, 1073
AjiI CACGTC 1 cut(s) 971
AjnI CCWGG 2 cut(s) 24, 744
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 1 cut(s) 596
AluI AGCT 1 cut(s) 596
Alw26I GTCTC 3 cut(s) 511, 569, 931
AlwI GGATC 1 cut(s) 36
AoxI GGCC 3 cut(s) 205, 634, 948
ApeKI GCWGC 3 cut(s) 394, 674, 677
AspLEI GCGC 2 cut(s) 89, 764
AspS9I GGNCC 1 cut(s) 492
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 307
AvaII GGWCC 1 cut(s) 492
BanI GGYRCC 2 cut(s) 761, 823
BauI CACGAG 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 381, 686, 689
BccI CCATC 5 cut(s) 49, 300, 528, 626, 1025
BceAI ACGGC 1 cut(s) 621
BciT130I CCWGG 2 cut(s) 26, 746
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 3 cut(s) 511, 569, 931
BfaI CTAG 2 cut(s) 327, 447
BfmI CTRYAG 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 765
BglII AGATCT 1 cut(s) 1006
BisI GCNGC 4 cut(s) 114, 395, 675, 678
BlsI GCNGC 4 cut(s) 115, 396, 676, 679
BmcAI AGTACT 1 cut(s) 835
Bme1390I CCNGG 3 cut(s) 26, 204, 746
Bme18I GGWCC 1 cut(s) 492
BmgBI CACGTC 1 cut(s) 971
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 2 cut(s) 763, 825
BmrFI CCNGG 3 cut(s) 26, 204, 746
BmsI GCATC 2 cut(s) 376, 690
BpiI GAAGAC 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 535
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 762
BsaI GGTCTC 2 cut(s) 511, 931
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 291, 404, 643
Bse1I ACTGG 3 cut(s) 14, 208, 841
BseBI CCWGG 2 cut(s) 26, 746
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 5 cut(s) 60, 311, 367, 539, 637
BseLI CCNNNNNNNGG 4 cut(s) 55, 291, 404, 643
BseMII CTCAG 1 cut(s) 1106
BseNI ACTGG 3 cut(s) 14, 208, 841
BseXI GCAGC 3 cut(s) 381, 686, 689
Bsh1236I CGCG 2 cut(s) 854, 1068
BshFI GGCC 3 cut(s) 207, 636, 950
BshNI GGYRCC 2 cut(s) 761, 823
BsiSI CCGG 2 cut(s) 204, 781
BslI CCNNNNNNNGG 4 cut(s) 55, 291, 404, 643
BsmAI GTCTC 3 cut(s) 511, 569, 931
BsmI GAATGC 1 cut(s) 992
BsnI GGCC 3 cut(s) 207, 636, 950
Bso31I GGTCTC 2 cut(s) 511, 931
Bsp1407I TGTACA 1 cut(s) 1001
Bsp143I GATC 4 cut(s) 16, 28, 581, 1006
BspACI CCGC 3 cut(s) 114, 286, 318
BspANI GGCC 3 cut(s) 207, 636, 950
BspCNI CTCAG 1 cut(s) 1105
BspFNI CGCG 2 cut(s) 854, 1068
BspLI GGNNCC 2 cut(s) 763, 825
BspPI GGATC 1 cut(s) 36
BspT107I GGYRCC 2 cut(s) 761, 823
BspTNI GGTCTC 2 cut(s) 511, 931
BsrGI TGTACA 1 cut(s) 1001
BsrI ACTGG 3 cut(s) 14, 208, 841
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 4 cut(s) 16, 28, 581, 1006
BssNI GRCGYC 1 cut(s) 762
BssSI CACGAG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 135
Bst2UI CCWGG 2 cut(s) 26, 746
Bst4CI ACNGT 2 cut(s) 717, 771
BstACI GRCGYC 1 cut(s) 762
BstAUI TGTACA 1 cut(s) 1001
BstDEI CTNAG 2 cut(s) 830, 1092
BstF5I GGATG 5 cut(s) 60, 311, 367, 539, 637
BstFNI CGCG 2 cut(s) 854, 1068
BstH2I RGCGCY 1 cut(s) 765
BstHHI GCGC 2 cut(s) 89, 764
BstKTI GATC 4 cut(s) 19, 31, 584, 1009
BstMAI GTCTC 3 cut(s) 511, 569, 931
BstMBI GATC 4 cut(s) 16, 28, 581, 1006
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNI CCWGG 2 cut(s) 26, 746
BstSCI CCNGG 3 cut(s) 24, 202, 744
BstSFI CTRYAG 1 cut(s) 289
BstUI CGCG 2 cut(s) 854, 1068
BstV1I GCAGC 3 cut(s) 381, 686, 689
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 2 cut(s) 28, 1006
BstXI CCANNNNNNTGG 1 cut(s) 1086
BstYI RGATCY 2 cut(s) 28, 1006
BsuRI GGCC 3 cut(s) 207, 636, 950
BtrI CACGTC 1 cut(s) 971
BtsCI GGATG 5 cut(s) 60, 311, 367, 539, 637
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 3 cut(s) 158, 215, 1100
CfoI GCGC 2 cut(s) 89, 764
Cfr13I GGNCC 1 cut(s) 492
CseI GACGC 1 cut(s) 860
CsiI ACCWGGT 1 cut(s) 744
Csp6I GTAC 4 cut(s) 731, 742, 834, 1002
CviAII CATG 5 cut(s) 64, 102, 169, 380, 478
CviJI RGCY 8 cut(s) 5, 207, 310, 596, 636, 784, 884, 950
CviKI_1 RGCY 8 cut(s) 5, 207, 310, 596, 636, 784, 884, 950
CviQI GTAC 4 cut(s) 731, 742, 834, 1002
DdeI CTNAG 2 cut(s) 830, 1092
DinI GGCGCC 1 cut(s) 763
DpnI GATC 4 cut(s) 18, 30, 583, 1008
DpnII GATC 4 cut(s) 16, 28, 581, 1006
EaeI YGGCCR 2 cut(s) 205, 634
Eco31I GGTCTC 2 cut(s) 511, 931
Eco47I GGWCC 1 cut(s) 492
EcoRII CCWGG 2 cut(s) 24, 744
EgeI GGCGCC 1 cut(s) 763
EheI GGCGCC 1 cut(s) 763
FaeI CATG 5 cut(s) 67, 105, 172, 383, 481
FalI AAGNNNNNCTT 4 cut(s) 422, 454, 892, 924
FatI CATG 5 cut(s) 63, 101, 168, 379, 477
FauI CCCGC 1 cut(s) 293
FauNDI CATATG 2 cut(s) 586, 1081
Fnu4HI GCNGC 4 cut(s) 114, 395, 675, 678
FokI GGATG 5 cut(s) 67, 318, 354, 546, 644
Fsp4HI GCNGC 4 cut(s) 114, 395, 675, 678
FspBI CTAG 2 cut(s) 327, 447
GlaI GCGC 2 cut(s) 88, 763
GluI GCNGC 4 cut(s) 114, 395, 675, 678
GsuI CTGGAG 1 cut(s) 535
HaeII RGCGCY 1 cut(s) 765
HaeIII GGCC 3 cut(s) 207, 636, 950
HapII CCGG 2 cut(s) 204, 781
HgaI GACGC 1 cut(s) 860
HhaI GCGC 2 cut(s) 89, 764
Hin1I GRCGYC 1 cut(s) 762
Hin1II CATG 5 cut(s) 67, 105, 172, 383, 481
Hin6I GCGC 2 cut(s) 87, 762
HinP1I GCGC 2 cut(s) 87, 762
HinfI GANTC 6 cut(s) 59, 344, 569, 752, 877, 1090
HpaII CCGG 2 cut(s) 204, 781
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 2 cut(s) 144, 1098
Hpy188I TCNGA 8 cut(s) 16, 459, 466, 553, 574, 697, 985, 996
Hpy188III TCNNGA 6 cut(s) 240, 327, 348, 514, 787, 798
Hpy8I GTNNAC 2 cut(s) 144, 1098
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 3 cut(s) 462, 517, 850
HpyCH4III ACNGT 2 cut(s) 717, 771
HpyCH4IV ACGT 2 cut(s) 271, 970
HpyCH4V TGCA 5 cut(s) 67, 367, 957, 968, 990
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 830, 1092
HpySE526I ACGT 2 cut(s) 271, 970
Hsp92I GRCGYC 1 cut(s) 762
Hsp92II CATG 5 cut(s) 67, 105, 172, 383, 481
HspAI GCGC 2 cut(s) 87, 762
KasI GGCGCC 1 cut(s) 761
Kzo9I GATC 4 cut(s) 16, 28, 581, 1006
Lsp1109I GCAGC 3 cut(s) 381, 686, 689
LweI GCATC 2 cut(s) 376, 690
MabI ACCWGGT 1 cut(s) 744
MaeI CTAG 2 cut(s) 327, 447
MaeII ACGT 2 cut(s) 271, 970
MaeIII GTNAC 2 cut(s) 212, 650
MalI GATC 4 cut(s) 18, 30, 583, 1008
MboI GATC 4 cut(s) 16, 28, 581, 1006
MboII GAAGA 5 cut(s) 11, 288, 395, 900, 968
MfeI CAATTG 3 cut(s) 737, 841, 952
MflI RGATCY 2 cut(s) 28, 1006
MluCI AATT 7 cut(s) 387, 562, 611, 737, 841, 904, 952
Mly113I GGCGCC 1 cut(s) 762
MlyI GAGTC 1 cut(s) 1084
MmeI TCCRAC 2 cut(s) 828, 1019
MnlI CCTC 7 cut(s) 175, 230, 331, 814, 853, 916, 1030
MseI TTAA 2 cut(s) 246, 899
MslI CAYNNNNRTG 2 cut(s) 476, 1084
MspA1I CMGCKG 1 cut(s) 288
MspI CCGG 2 cut(s) 204, 781
MspR9I CCNGG 3 cut(s) 26, 204, 746
MunI CAATTG 3 cut(s) 737, 841, 952
Mva1269I GAATGC 1 cut(s) 992
MvaI CCWGG 2 cut(s) 26, 746
MvnI CGCG 2 cut(s) 854, 1068
MwoI GCNNNNNNNGC 1 cut(s) 169
NarI GGCGCC 1 cut(s) 762
NciI CCSGG 1 cut(s) 204
NdeI CATATG 2 cut(s) 586, 1081
NdeII GATC 4 cut(s) 16, 28, 581, 1006
NlaIII CATG 5 cut(s) 67, 105, 172, 383, 481
NlaIV GGNNCC 2 cut(s) 763, 825
NmuCI GTSAC 1 cut(s) 650
PctI GAATGC 1 cut(s) 992
PfeI GAWTC 5 cut(s) 59, 344, 569, 752, 877
PflMI CCANNNNNTGG 2 cut(s) 55, 404
PkrI GCNGC 4 cut(s) 115, 396, 676, 679
PleI GAGTC 1 cut(s) 1084
PluTI GGCGCC 1 cut(s) 765
PpsI GAGTC 1 cut(s) 1084
PsiI TTATAA 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 24, 744
PspGI CCWGG 2 cut(s) 24, 744
PspN4I GGNNCC 2 cut(s) 763, 825
PspPI GGNCC 1 cut(s) 492
PsuI RGATCY 2 cut(s) 28, 1006
RsaI GTAC 4 cut(s) 732, 743, 835, 1003
RsaNI GTAC 4 cut(s) 731, 742, 834, 1002
RseI CAYNNNNRTG 2 cut(s) 476, 1084
SaqAI TTAA 2 cut(s) 246, 899
SatI GCNGC 4 cut(s) 114, 395, 675, 678
Sau3AI GATC 4 cut(s) 16, 28, 581, 1006
Sau96I GGNCC 1 cut(s) 492
ScaI AGTACT 1 cut(s) 835
SchI GAGTC 1 cut(s) 1084
ScrFI CCNGG 3 cut(s) 26, 204, 746
SexAI ACCWGGT 1 cut(s) 744
SfaNI GCATC 2 cut(s) 376, 690
SfcI CTRYAG 1 cut(s) 289
SfoI GGCGCC 1 cut(s) 763
SinI GGWCC 1 cut(s) 492
SmiMI CAYNNNNRTG 2 cut(s) 476, 1084
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 7 cut(s) 387, 562, 611, 737, 841, 904, 952
SsiI CCGC 3 cut(s) 114, 286, 318
SspDI GGCGCC 1 cut(s) 761
SspMI CTAG 2 cut(s) 327, 447
StyD4I CCNGG 3 cut(s) 24, 202, 744
TaaI ACNGT 2 cut(s) 717, 771
TaiI ACGT 2 cut(s) 274, 973
TaqI TCGA 4 cut(s) 799, 880, 921, 1041
TaqII GACCGA 1 cut(s) 535
TasI AATT 7 cut(s) 387, 562, 611, 737, 841, 904, 952
TatI WGTACW 2 cut(s) 833, 1001
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 5 cut(s) 59, 344, 569, 752, 877
Tru1I TTAA 2 cut(s) 246, 899
Tru9I TTAA 2 cut(s) 246, 899
TscAI CASTG 3 cut(s) 165, 215, 1100
TseFI GTSAC 1 cut(s) 650
TseI GCWGC 3 cut(s) 394, 674, 677
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 4 cut(s) 64, 396, 900, 1040
TspRI CASTG 3 cut(s) 165, 215, 1100
Van91I CCANNNNNTGG 2 cut(s) 55, 404
VpaK11BI GGWCC 1 cut(s) 492
XbaI TCTAGA 1 cut(s) 326
XspI CTAG 2 cut(s) 327, 447
ZrmI AGTACT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.