Rroxscaffold_7G00176900

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000399
Physical Location & Seq
Forward (+)
16537346 .. 16538494
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176900.1

Sequence Viewer

Length: 1149 bp
ATGGAGCGCAATTGGTCCAAGGATCTTCCTGAAGATCTTATCATATGTGTCGCCAAATGGCTATGTTCCTTGGAAGATTTTATTTTTTTCGGTGCAGTTTGCAAATCATGGAGATCAGCCACGACGAAGCTGCCAAAGGAGAAAAAATATACGAATACTACTGGTATTGGTTCGAGATTATTAACACAGCAAGTTCCTTTACTTATGCTTCCACTTGCTTTATTTGAGATGAATTGTTCAAACCTCAGCTTGTCAAATAAGAAAGTTGGGTTTTACAATCCGGGAAAAGGTGAGATTAGTTACAAACTTGATCTACCAAGAGAAAAGATGACGATGTGCGTTTCATCTTTGGGGTGGCTGATGATCTTGTCGGGAGCTAATGGTGGCAGATGGAATCTGTTTCATCCTTTAACTCTTGCCAAAATTGAGCTCCCAGATGGAGGGGCGCATTTGTCGGGCGTTATAGAGAAGTTTGCCTTATCATCGAGCCCTTCTTGGACATCGGATTACATACTCATGTTTCATACACGTTATCGTTTGGGGTTTTACAGACCAGGGCTAGGTGAAAATTGTAAAACAATAAATTTATTGGGAGATACTATAATGGATGTAGTTTATTATAAAGGTCAGTTCTATTTCTTGTACTTTTCAGGCTGCGTTTCAGTGTTTGATATTGATAAAGAAAAAATGAGGGTTGTTGCACCCGAATTTCCAAAGAGACAACTTTTAGGTCCCAATGTGCGTACTTCAAATCGATATTTAGTGGAATCGGCTGGGATTCTGTTGGTGGTTCTGTTTACTGCTAAGAAGACCAATTTTGAAGATGAAGCATCAAAATATGGCTGCAGGGTTTTTGAGGTCCCATTTACAAACAGAAAATCATGGTCGGACTCGGAGGTTAAGAGCTTGGGGAACCGAACCATTTTCCTAAGTCTTTCTAGTTCTTCCTTCTCGATCGAGGCGTCAAACTATTCTAGATGTAAACCCAACTGCATCTACTTCATGAATAGAAAGATAATCTTTCCAGGAACACGCAAAGATATGAGTGTTTTTAACATGGAGGATGGCACAATCACCCGAGCTTTTGATAATTTCGTCGATTATGAAGAAGCAAGAGGAGATCATTTATGGATTCAGCCGAGTTTGTAA

Protein Analysis

382

Amino Acids

43.51

Weight (kDa)

8.94

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 91 - 352 9.9e-44 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 621
AclWI GGATC 1 cut(s) 30
AcsI RAATTY 2 cut(s) 583, 707
AcuI CTGAAG 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 962
AfaI GTAC 2 cut(s) 644, 745
AfiI CCNNNNNNNGG 3 cut(s) 287, 440, 560
AflIII ACRYGT 1 cut(s) 527
AgsI TTSAA 3 cut(s) 240, 750, 821
AjnI CCWGG 2 cut(s) 553, 1024
AluBI AGCT 6 cut(s) 130, 249, 377, 430, 906, 1082
AluI AGCT 6 cut(s) 130, 249, 377, 430, 906, 1082
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 712
AlwI GGATC 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 1077
ApeKI GCWGC 3 cut(s) 130, 654, 843
ApoI RAATTY 2 cut(s) 583, 707
AspLEI GCGC 2 cut(s) 9, 448
AspS9I GGNCC 3 cut(s) 15, 731, 859
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 3 cut(s) 302, 575, 1066
AvaI CYCGRG 1 cut(s) 1077
AvaII GGWCC 3 cut(s) 15, 731, 859
BanII GRGCYC 2 cut(s) 432, 491
BbsI GAAGAC 1 cut(s) 815
Bbv12I GWGCWC 1 cut(s) 432
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 3 cut(s) 117, 641, 830
BccI CCATC 3 cut(s) 384, 431, 1058
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 2 cut(s) 555, 1026
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 712
BfaI CTAG 3 cut(s) 560, 939, 975
BfmI CTRYAG 1 cut(s) 844
BglII AGATCT 1 cut(s) 34
BisI GCNGC 3 cut(s) 131, 655, 844
BlsI GCNGC 3 cut(s) 132, 656, 845
Bme1390I CCNGG 3 cut(s) 282, 555, 1026
Bme18I GGWCC 3 cut(s) 15, 731, 859
BmeT110I CYCGRG 1 cut(s) 1077
BmgT120I GGNCC 3 cut(s) 15, 731, 859
BmiI GGNNCC 3 cut(s) 733, 861, 914
BmrFI CCNGG 3 cut(s) 282, 555, 1026
BmsI GCATC 2 cut(s) 839, 1002
BpiI GAAGAC 1 cut(s) 815
Bpu10I CCTNAGC 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 282
Bsa29I ATCGAT 1 cut(s) 754
BsaHI GRCGYC 1 cut(s) 962
BsaJI CCNNGG 3 cut(s) 18, 69, 554
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 440, 560
Bse1I ACTGG 1 cut(s) 166
BseBI CCWGG 2 cut(s) 555, 1026
BseCI ATCGAT 1 cut(s) 754
BseDI CCNNGG 3 cut(s) 18, 69, 554
BseGI GGATG 3 cut(s) 403, 613, 1069
BseLI CCNNNNNNNGG 3 cut(s) 287, 440, 560
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 1131
BseXI GCAGC 3 cut(s) 117, 641, 830
BseYI CCCAGC 1 cut(s) 773
BsgI GTGCAG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 957
BshVI ATCGAT 1 cut(s) 754
BsiEI CGRYCG 1 cut(s) 957
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 1077
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 2 cut(s) 717, 845
BslI CCNNNNNNNGG 3 cut(s) 287, 440, 560
BsmAI GTCTC 1 cut(s) 712
BsmFI GGGAC 2 cut(s) 717, 845
BsoBI CYCGRG 1 cut(s) 1077
Bsp1286I GDGCHC 2 cut(s) 432, 491
Bsp143I GATC 7 cut(s) 22, 34, 113, 310, 363, 954, 1120
BspCNI CTCAG 1 cut(s) 258
BspDI ATCGAT 1 cut(s) 754
BspHI TCATGA 1 cut(s) 1002
BspLI GGNNCC 3 cut(s) 733, 861, 914
BspMAI CTGCAG 1 cut(s) 848
BspPI GGATC 1 cut(s) 30
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 18, 69, 554
BssMI GATC 7 cut(s) 22, 34, 113, 310, 363, 954, 1120
BssNI GRCGYC 1 cut(s) 962
BssT1I CCWWGG 2 cut(s) 18, 69
Bst2UI CCWGG 2 cut(s) 555, 1026
BstACI GRCGYC 1 cut(s) 962
BstDEI CTNAG 3 cut(s) 245, 804, 929
BstF5I GGATG 3 cut(s) 403, 613, 1069
BstHHI GCGC 2 cut(s) 9, 448
BstKTI GATC 7 cut(s) 25, 37, 116, 313, 366, 957, 1123
BstMAI GTCTC 1 cut(s) 712
BstMBI GATC 7 cut(s) 22, 34, 113, 310, 363, 954, 1120
BstMCI CGRYCG 1 cut(s) 957
BstNI CCWGG 2 cut(s) 555, 1026
BstSCI CCNGG 3 cut(s) 280, 553, 1024
BstSFI CTRYAG 1 cut(s) 844
BstV1I GCAGC 3 cut(s) 117, 641, 830
BstV2I GAAGAC 1 cut(s) 815
BstX2I RGATCY 2 cut(s) 22, 34
BstYI RGATCY 2 cut(s) 22, 34
Bsu15I ATCGAT 1 cut(s) 754
BsuTUI ATCGAT 1 cut(s) 754
BtsCI GGATG 3 cut(s) 403, 613, 1069
BtsIMutI CAGTG 1 cut(s) 669
CciI TCATGA 1 cut(s) 1002
CfoI GCGC 2 cut(s) 9, 448
Cfr13I GGNCC 3 cut(s) 15, 731, 859
ClaI ATCGAT 1 cut(s) 754
CseI GACGC 1 cut(s) 951
Csp6I GTAC 2 cut(s) 643, 744
CviAII CATG 5 cut(s) 108, 517, 882, 1003, 1057
CviQI GTAC 2 cut(s) 643, 744
DdeI CTNAG 3 cut(s) 245, 804, 929
DpnI GATC 7 cut(s) 24, 36, 115, 312, 365, 956, 1122
DpnII GATC 7 cut(s) 22, 34, 113, 310, 363, 954, 1120
Ecl136II GAGCTC 1 cut(s) 430
Eco130I CCWWGG 2 cut(s) 18, 69
Eco24I GRGCYC 2 cut(s) 432, 491
Eco47I GGWCC 3 cut(s) 15, 731, 859
Eco53kI GAGCTC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 1077
EcoICRI GAGCTC 1 cut(s) 430
EcoO109I RGGNCCY 2 cut(s) 731, 859
EcoRII CCWGG 2 cut(s) 553, 1024
EcoT14I CCWWGG 2 cut(s) 18, 69
EcoT38I GRGCYC 2 cut(s) 432, 491
ErhI CCWWGG 2 cut(s) 18, 69
FaeI CATG 5 cut(s) 111, 520, 885, 1006, 1060
FalI AAGNNNNNCTT 4 cut(s) 461, 493, 1004, 1036
FaqI GGGAC 2 cut(s) 717, 845
FatI CATG 5 cut(s) 107, 516, 881, 1002, 1056
FauNDI CATATG 1 cut(s) 44
Fnu4HI GCNGC 3 cut(s) 131, 655, 844
FokI GGATG 3 cut(s) 390, 620, 1076
FriOI GRGCYC 2 cut(s) 432, 491
Fsp4HI GCNGC 3 cut(s) 131, 655, 844
FspBI CTAG 3 cut(s) 560, 939, 975
GlaI GCGC 2 cut(s) 8, 447
GluI GCNGC 3 cut(s) 131, 655, 844
GsaI CCCAGC 1 cut(s) 777
HapII CCGG 1 cut(s) 281
HgaI GACGC 1 cut(s) 951
HhaI GCGC 2 cut(s) 9, 448
Hin1I GRCGYC 1 cut(s) 962
Hin1II CATG 5 cut(s) 111, 520, 885, 1006, 1060
Hin6I GCGC 2 cut(s) 7, 446
HinP1I GCGC 2 cut(s) 7, 446
HinfI GANTC 5 cut(s) 394, 767, 778, 890, 1132
HpaII CCGG 1 cut(s) 281
HphI GGTGA 3 cut(s) 302, 575, 1066
Hpy166II GTNNAC 2 cut(s) 798, 983
Hpy188I TCNGA 3 cut(s) 505, 889, 895
Hpy188III TCNNGA 6 cut(s) 29, 174, 372, 952, 975, 1003
Hpy8I GTNNAC 2 cut(s) 798, 983
Hpy99I CGWCG 2 cut(s) 127, 1100
HpyAV CCTTC 2 cut(s) 501, 958
HpyCH4IV ACGT 1 cut(s) 529
HpyCH4V TGCA 5 cut(s) 95, 102, 701, 846, 993
HpyF3I CTNAG 3 cut(s) 245, 804, 929
HpySE526I ACGT 1 cut(s) 529
Hsp92I GRCGYC 1 cut(s) 962
Hsp92II CATG 5 cut(s) 111, 520, 885, 1006, 1060
HspAI GCGC 2 cut(s) 7, 446
Kzo9I GATC 7 cut(s) 22, 34, 113, 310, 363, 954, 1120
LmnI GCTCC 3 cut(s) 4, 374, 435
Lsp1109I GCAGC 3 cut(s) 117, 641, 830
LweI GCATC 2 cut(s) 839, 1002
MaeI CTAG 3 cut(s) 560, 939, 975
MaeII ACGT 1 cut(s) 529
MaeIII GTNAC 1 cut(s) 299
MalI GATC 7 cut(s) 24, 36, 115, 312, 365, 956, 1122
MboI GATC 7 cut(s) 22, 34, 113, 310, 363, 954, 1120
MboII GAAGA 7 cut(s) 17, 44, 86, 820, 833, 936, 1118
MfeI CAATTG 1 cut(s) 10
MflI RGATCY 2 cut(s) 22, 34
MhlI GDGCHC 2 cut(s) 432, 491
MluCI AATT 8 cut(s) 10, 232, 423, 568, 583, 707, 814, 1090
MlyI GAGTC 1 cut(s) 884
MmeI TCCRAC 1 cut(s) 867
MnlI CCTC 8 cut(s) 254, 434, 684, 850, 889, 952, 1054, 1109
MseI TTAA 4 cut(s) 182, 410, 900, 1053
MslI CAYNNNNRTG 1 cut(s) 515
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 3 cut(s) 282, 555, 1026
MunI CAATTG 1 cut(s) 10
MvaI CCWGG 2 cut(s) 555, 1026
NciI CCSGG 1 cut(s) 282
NdeI CATATG 1 cut(s) 44
NdeII GATC 7 cut(s) 22, 34, 113, 310, 363, 954, 1120
NlaIII CATG 5 cut(s) 111, 520, 885, 1006, 1060
NlaIV GGNNCC 3 cut(s) 733, 861, 914
PagI TCATGA 1 cut(s) 1002
PcsI WCGNNNNNNNCGW 1 cut(s) 959
PfeI GAWTC 4 cut(s) 394, 767, 778, 1132
PfoI TCCNGGA 2 cut(s) 280, 1024
PkrI GCNGC 3 cut(s) 132, 656, 845
Ple19I CGATCG 1 cut(s) 957
PleI GAGTC 1 cut(s) 884
PpsI GAGTC 1 cut(s) 884
PpuMI RGGWCCY 2 cut(s) 731, 859
PsiI TTATAA 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 432
Psp5II RGGWCCY 2 cut(s) 731, 859
Psp6I CCWGG 2 cut(s) 553, 1024
PspFI CCCAGC 1 cut(s) 773
PspGI CCWGG 2 cut(s) 553, 1024
PspN4I GGNNCC 3 cut(s) 733, 861, 914
PspPI GGNCC 3 cut(s) 15, 731, 859
PspPPI RGGWCCY 2 cut(s) 731, 859
PstI CTGCAG 1 cut(s) 848
PsuI RGATCY 2 cut(s) 22, 34
PvuI CGATCG 1 cut(s) 957
RsaI GTAC 2 cut(s) 644, 745
RsaNI GTAC 2 cut(s) 643, 744
RseI CAYNNNNRTG 1 cut(s) 515
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 4 cut(s) 182, 410, 900, 1053
SatI GCNGC 3 cut(s) 131, 655, 844
Sau3AI GATC 7 cut(s) 22, 34, 113, 310, 363, 954, 1120
Sau96I GGNCC 3 cut(s) 15, 731, 859
SchI GAGTC 1 cut(s) 884
ScrFI CCNGG 3 cut(s) 282, 555, 1026
SduI GDGCHC 2 cut(s) 432, 491
SfaNI GCATC 2 cut(s) 839, 1002
SfcI CTRYAG 1 cut(s) 844
SinI GGWCC 3 cut(s) 15, 731, 859
SmiMI CAYNNNNRTG 1 cut(s) 515
Sse9I AATT 8 cut(s) 10, 232, 423, 568, 583, 707, 814, 1090
SspMI CTAG 3 cut(s) 560, 939, 975
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 3 cut(s) 280, 553, 1024
StyI CCWWGG 2 cut(s) 18, 69
TaiI ACGT 1 cut(s) 532
TaqI TCGA 6 cut(s) 173, 485, 754, 953, 957, 1098
TasI AATT 8 cut(s) 10, 232, 423, 568, 583, 707, 814, 1090
TatI WGTACW 1 cut(s) 642
TfiI GAWTC 4 cut(s) 394, 767, 778, 1132
Tru1I TTAA 4 cut(s) 182, 410, 900, 1053
Tru9I TTAA 4 cut(s) 182, 410, 900, 1053
TscAI CASTG 1 cut(s) 669
TseI GCWGC 3 cut(s) 130, 654, 843
TspDTI ATGAA 8 cut(s) 245, 333, 392, 512, 840, 991, 1019, 1119
TspRI CASTG 1 cut(s) 669
VpaK11BI GGWCC 3 cut(s) 15, 731, 859
XapI RAATTY 2 cut(s) 583, 707
XbaI TCTAGA 1 cut(s) 974
XspI CTAG 3 cut(s) 560, 939, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.