Rmu_sc0010418.1_g000008

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010418.1
OG0000399
Physical Location & Seq
Forward (+)
31677 .. 32831
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010418.1_g000008.1.cds

Sequence Viewer

Length: 1155 bp
atggaaccgaggtccaaaaaaaggaagtgtttgacggctaactggttggatcttcctcaagagcttcttctgtccatcgccagacgcatttgttcagtgcaagactttgttacttttggtgcggtttgtaaaacatggagtcgtgcctccaccaaagaaaactttcttggtggattaacacatgaagttccattccttgtgctaccggattattcatcagagaatgaggagaaggccgattatactactcccaagctcaagtactgctacaaccttacaaaaggcaagttttgcagacttaatttgaatgtaccgaaaactccgattgaacttcatcgactactaatgtggtcatcctgtcgttcttctctcggatggctcattattcgaccacaaactagaaatttgagaaacgacgtgtatctgttacatcctttcaaagacacaaaaattgttctgccaacctatcgtgaaagaattaagaaaattgtattatcatctagtccttctttgacatcagactacatagccatggtttcttatacttggagaacaaaattggcattttggagaccaaaagacaaggaatggactaaaatatcattaccgagatatgcatggtcaaaaacaatagaatgcttcgatgatatagcttactatagaggaaaatttcatgtggtggacagatctggcaatgtccttgtttgtgacattgatgaccacaaagcagaagcaagggtcgttccaaagatgcctttgtatctatttcatgataagaatatgaagcaattatacttggtggaatcagcgggggacttgctggttgttgtccgtgtttgtttgtatgccgaaacaattggatttagggttttcaaggtgacatttaatactgacaattggacggaagtaaagaatttggggaatagagtcttgtttctcggtgataatagttcttctttctctatagagacctcagactactctagatgtaaggctaattgcatatacttcacgactgatcaaatggctacccaacaatgtggtgtatttagtatgaaagatagaaaagtcaagacactcttacagaagtttcctagtttcttgaaaccatatatatggattcagccgagtttctatggagcttcccttccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

384

Amino Acids

44.7

Weight (kDa)

9.41

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 122, 809
AclWI GGATC 1 cut(s) 57
AcsI RAATTY 3 cut(s) 403, 668, 913
AfaI GTAC 2 cut(s) 263, 312
AfiI CCNNNNNNNGG 1 cut(s) 21
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 5 cut(s) 307, 329, 439, 874, 1105
AjiI CACGTC 1 cut(s) 418
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 4 cut(s) 64, 256, 653, 1142
AluI AGCT 4 cut(s) 64, 256, 653, 1142
Alw26I GTCTC 2 cut(s) 565, 962
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 234
ApoI RAATTY 3 cut(s) 403, 668, 913
Asp700I GAANNNNTTC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 889, 953
AvaII GGWCC 1 cut(s) 12
BarI GAAGNNNNNNTAC 2 cut(s) 776, 808
BccI CCATC 2 cut(s) 83, 369
BceAI ACGGC 1 cut(s) 51
BclI TGATCA 1 cut(s) 1018
BcoDI GTCTC 2 cut(s) 565, 962
BfaI CTAG 4 cut(s) 399, 501, 984, 1095
BfmI CTRYAG 2 cut(s) 658, 963
BglII AGATCT 1 cut(s) 686
BmcAI AGTACT 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 741
BpuEI CTTGAG 2 cut(s) 42, 242
BsaI GGTCTC 2 cut(s) 565, 962
BsaJI CCNNGG 2 cut(s) 8, 531
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 700
BseDI CCNNGG 2 cut(s) 8, 531
BseGI GGATG 3 cut(s) 353, 380, 430
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 700
BseMII CTCAG 1 cut(s) 987
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 242
BshFI GGCC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 827
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 2 cut(s) 565, 962
BsmFI GGGAC 1 cut(s) 827
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 1 cut(s) 236
Bso31I GGTCTC 2 cut(s) 565, 962
Bsp143I GATC 3 cut(s) 49, 686, 1018
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 2 cut(s) 122, 809
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 986
BspHI TCATGA 1 cut(s) 769
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 57
BspTNI GGTCTC 2 cut(s) 565, 962
BsrDI GCAATG 1 cut(s) 700
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 8, 531
BssMI GATC 3 cut(s) 49, 686, 1018
BssT1I CCWWGG 1 cut(s) 531
BstAPI GCANNNNNTGC 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 973
BstDSI CCRYGG 1 cut(s) 531
BstF5I GGATG 3 cut(s) 353, 380, 430
BstKTI GATC 3 cut(s) 52, 689, 1021
BstMAI GTCTC 2 cut(s) 565, 962
BstMBI GATC 3 cut(s) 49, 686, 1018
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstSFI CTRYAG 2 cut(s) 658, 963
BstX2I RGATCY 2 cut(s) 49, 686
BstXI CCANNNNNNTGG 2 cut(s) 1040, 1116
BstYI RGATCY 2 cut(s) 49, 686
BsuRI GGCC 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 531
BtgZI GCGATG 1 cut(s) 61
BtrI CACGTC 1 cut(s) 418
BtsCI GGATG 3 cut(s) 353, 380, 430
BtsIMutI CAGTG 1 cut(s) 102
CciI TCATGA 1 cut(s) 769
Cfr13I GGNCC 1 cut(s) 12
CseI GACGC 1 cut(s) 93
Csp6I GTAC 2 cut(s) 262, 311
CviAII CATG 6 cut(s) 135, 182, 532, 618, 674, 770
CviQI GTAC 2 cut(s) 262, 311
DdeI CTNAG 1 cut(s) 973
DpnI GATC 3 cut(s) 51, 688, 1020
DpnII GATC 3 cut(s) 49, 686, 1018
Eco130I CCWWGG 1 cut(s) 531
Eco31I GGTCTC 2 cut(s) 565, 962
Eco47I GGWCC 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 531
EcoT22I ATGCAT 1 cut(s) 619
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 6 cut(s) 138, 185, 535, 621, 677, 773
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 1064, 1096
FaqI GGGAC 1 cut(s) 827
FatI CATG 6 cut(s) 134, 181, 531, 617, 673, 769
FauI CCCGC 1 cut(s) 802
FbaI TGATCA 1 cut(s) 1018
FokI GGATG 3 cut(s) 340, 387, 417
FspBI CTAG 4 cut(s) 399, 501, 984, 1095
HaeIII GGCC 1 cut(s) 236
HapII CCGG 1 cut(s) 206
HgaI GACGC 1 cut(s) 93
Hin1II CATG 6 cut(s) 138, 185, 535, 621, 677, 773
HinfI GANTC 4 cut(s) 139, 803, 927, 1120
HpaII CCGG 1 cut(s) 206
HphI GGTGA 2 cut(s) 889, 953
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 5 cut(s) 220, 324, 374, 520, 976
Hpy188III TCNNGA 7 cut(s) 59, 470, 770, 984, 1012, 1072, 1102
Hpy8I GTNNAC 1 cut(s) 682
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 2 cut(s) 226, 516
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 4 cut(s) 100, 294, 617, 1002
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 1 cut(s) 973
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 6 cut(s) 138, 185, 535, 621, 677, 773
Ksp22I TGATCA 1 cut(s) 1018
Kzo9I GATC 3 cut(s) 49, 686, 1018
LmnI GCTCC 1 cut(s) 1139
LpnPI CCDG 6 cut(s) 28, 94, 219, 370, 675, 806
LweI GCATC 1 cut(s) 741
MaeI CTAG 4 cut(s) 399, 501, 984, 1095
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 4 cut(s) 109, 426, 707, 877
MalI GATC 3 cut(s) 51, 688, 1020
MboI GATC 3 cut(s) 49, 686, 1018
MboII GAAGA 4 cut(s) 44, 59, 357, 945
MfeI CAATTG 2 cut(s) 855, 895
MflI RGATCY 2 cut(s) 49, 686
MlyI GAGTC 2 cut(s) 148, 936
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 6 cut(s) 3, 66, 157, 220, 656, 982
Mph1103I ATGCAT 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 4 cut(s) 176, 300, 480, 885
MslI CAYNNNNRTG 2 cut(s) 530, 1114
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 1 cut(s) 206
MunI CAATTG 2 cut(s) 855, 895
Mva1269I GAATGC 1 cut(s) 641
MwoI GCNNNNNNNGC 1 cut(s) 291
NcoI CCATGG 1 cut(s) 531
NdeII GATC 3 cut(s) 49, 686, 1018
NlaIII CATG 6 cut(s) 138, 185, 535, 621, 677, 773
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 1152
NmuCI GTSAC 2 cut(s) 707, 877
NsiI ATGCAT 1 cut(s) 619
PagI TCATGA 1 cut(s) 769
PctI GAATGC 1 cut(s) 641
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 803, 1120
PleI GAGTC 2 cut(s) 147, 935
PpsI GAGTC 2 cut(s) 147, 935
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 12
PsuI RGATCY 2 cut(s) 49, 686
RsaI GTAC 2 cut(s) 263, 312
RsaNI GTAC 2 cut(s) 262, 311
RseI CAYNNNNRTG 2 cut(s) 530, 1114
SaqAI TTAA 4 cut(s) 176, 300, 480, 885
Sau3AI GATC 3 cut(s) 49, 686, 1018
Sau96I GGNCC 1 cut(s) 12
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 2 cut(s) 148, 936
SfaNI GCATC 1 cut(s) 741
SfcI CTRYAG 2 cut(s) 658, 963
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 2 cut(s) 530, 1114
SmlI CTYRAG 2 cut(s) 57, 257
SmoI CTYRAG 2 cut(s) 57, 257
SsiI CCGC 2 cut(s) 122, 809
SspMI CTAG 4 cut(s) 399, 501, 984, 1095
StyI CCWWGG 1 cut(s) 531
TaiI ACGT 1 cut(s) 420
TaqI TCGA 3 cut(s) 337, 388, 642
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 2 cut(s) 803, 1120
Tru1I TTAA 4 cut(s) 176, 300, 480, 885
Tru9I TTAA 4 cut(s) 176, 300, 480, 885
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 2 cut(s) 707, 877
Tsp45I GTSAC 2 cut(s) 707, 877
TspDTI ATGAA 7 cut(s) 198, 204, 323, 662, 758, 797, 1070
TspGWI ACGGA 2 cut(s) 821, 917
TspRI CASTG 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 3 cut(s) 403, 668, 913
XbaI TCTAGA 1 cut(s) 983
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 4 cut(s) 399, 501, 984, 1095
ZrmI AGTACT 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.