Rroxscaffold_4G00291560

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000399
Physical Location & Seq
Forward (+)
11981216 .. 11984101
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00291560.1

Sequence Viewer

Length: 501 bp
ATGGGGAAATTCAGGGATACAGTTTATTATAAAGGACACTTTTATGTGGAATATGAAGGTCGTGTTTTTGTTTGCGATGTGGAAGATTCTGAAAATGCACGCTTGGGACTTGTTGCTCCAGAGATTCCAAAGGAAATCTTAGGCCCTATAACTCATATTAAAAGGCTCTATTTAGTGGAATCACCGGCTGGGATCTTTTTCATTGTTGTGTGTCTTTGTTACACATCTACACTTGGTCTAACTGATGGTTGTAAGGTGTTCCAGGTACCATCTGTTAATGGCAATAGTTCGTGGTCCAAATCAGAGATGCCTGATTGTGATGATTACACAATCCGAAGTTGCACGAAGTTGAATGCTGAGAATGATCGCTGTGTCGAGAATTTGAAAGTTTGGAAAGCACAAACGTCAAAATTTCAGGCGTTTTCCCGAAAGACCATACTCGAGCAATCATTTATCAAAGAAGCTAACTTCTTAAGAATCATGAAGATAGCCCAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

166

Amino Acids

18.96

Weight (kDa)

6.73

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 3 - 100 3.2e-07 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
Acc65I GGTACC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 265
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 3 cut(s) 8, 379, 410
AfaI GTAC 1 cut(s) 267
AflII CTTAAG 1 cut(s) 472
AgsI TTSAA 2 cut(s) 352, 385
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 1 cut(s) 464
AluI AGCT 1 cut(s) 464
AlwI GGATC 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 1 cut(s) 142
ApoI RAATTY 3 cut(s) 8, 379, 410
Asp718I GGTACC 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 143, 294
AsuHPI GGTGA 1 cut(s) 174
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 1 cut(s) 294
BanI GGYRCC 1 cut(s) 265
BccI CCATC 2 cut(s) 239, 277
BciT130I CCWGG 1 cut(s) 263
BciVI GTATCC 1 cut(s) 10
BfrI CTTAAG 1 cut(s) 472
BfuI GTATCC 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 2 cut(s) 143, 294
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 102
Bse118I RCCGGY 1 cut(s) 184
BseBI CCWGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 348
BseYI CCCAGC 1 cut(s) 188
BshFI GGCC 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 440
Bsp143I GATC 2 cut(s) 192, 364
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 349
BspHI TCATGA 1 cut(s) 480
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 265
BspTI CTTAAG 1 cut(s) 472
BsrFI RCCGGY 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 184
BssMI GATC 2 cut(s) 192, 364
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 22
BstAFI CTTAAG 1 cut(s) 472
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 2 cut(s) 139, 357
BstKTI GATC 2 cut(s) 195, 367
BstMBI GATC 2 cut(s) 192, 364
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 100
CciI TCATGA 1 cut(s) 480
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 143, 294
Csp6I GTAC 1 cut(s) 266
CviAII CATG 1 cut(s) 481
CviJI RGCY 5 cut(s) 144, 166, 188, 464, 491
CviKI_1 RGCY 5 cut(s) 144, 166, 188, 464, 491
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 2 cut(s) 139, 357
DpnI GATC 2 cut(s) 194, 366
DpnII GATC 2 cut(s) 192, 364
Eco47I GGWCC 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 261
FaeI CATG 1 cut(s) 484
FaiI YATR 7 cut(s) 30, 45, 54, 149, 156, 437, 482
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 1 cut(s) 120
FatI CATG 1 cut(s) 480
GsaI CCCAGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 144
HapII CCGG 1 cut(s) 185
Hin1II CATG 1 cut(s) 484
HinfI GANTC 4 cut(s) 86, 124, 179, 477
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 174
Hpy188I TCNGA 3 cut(s) 91, 304, 335
Hpy188III TCNNGA 4 cut(s) 119, 376, 426, 481
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 404
HpyCH4V TGCA 2 cut(s) 98, 342
HpyF3I CTNAG 2 cut(s) 139, 357
HpySE526I ACGT 1 cut(s) 404
Hsp92II CATG 1 cut(s) 484
KpnI GGTACC 1 cut(s) 269
Kzo9I GATC 2 cut(s) 192, 364
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 7 cut(s) 132, 174, 198, 248, 275, 324, 401
LweI GCATC 1 cut(s) 297
MaeII ACGT 1 cut(s) 404
MaeIII GTNAC 1 cut(s) 218
MalI GATC 2 cut(s) 194, 366
MboI GATC 2 cut(s) 192, 364
MboII GAAGA 2 cut(s) 95, 496
MflI RGATCY 1 cut(s) 192
MluCI AATT 3 cut(s) 8, 379, 410
MseI TTAA 3 cut(s) 159, 276, 473
MslI CAYNNNNRTG 2 cut(s) 42, 206
MspCI CTTAAG 1 cut(s) 472
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 358
MvaI CCWGG 1 cut(s) 263
NdeII GATC 2 cut(s) 192, 364
NlaIII CATG 1 cut(s) 484
NlaIV GGNNCC 1 cut(s) 267
PaeR7I CTCGAG 1 cut(s) 440
PagI TCATGA 1 cut(s) 480
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 4 cut(s) 86, 124, 179, 477
PsiI TTATAA 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 188
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 2 cut(s) 143, 294
PspXI VCTCGAGB 1 cut(s) 440
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 2 cut(s) 42, 206
SaqAI TTAA 3 cut(s) 159, 276, 473
Sau3AI GATC 2 cut(s) 192, 364
Sau96I GGNCC 2 cut(s) 143, 294
ScrFI CCNGG 1 cut(s) 263
SetI ASST 5 cut(s) 61, 258, 267, 407, 466
SfaNI GCATC 1 cut(s) 297
Sfr274I CTCGAG 1 cut(s) 440
SinI GGWCC 1 cut(s) 294
SlaI CTCGAG 1 cut(s) 440
SmiMI CAYNNNNRTG 2 cut(s) 42, 206
SmlI CTYRAG 2 cut(s) 440, 472
SmoI CTYRAG 2 cut(s) 440, 472
Sse9I AATT 3 cut(s) 8, 379, 410
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 407
TaqI TCGA 2 cut(s) 375, 441
TasI AATT 3 cut(s) 8, 379, 410
TfiI GAWTC 4 cut(s) 86, 124, 179, 477
Tru1I TTAA 3 cut(s) 159, 276, 473
Tru9I TTAA 3 cut(s) 159, 276, 473
TspDTI ATGAA 3 cut(s) 69, 190, 497
Vha464I CTTAAG 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 3 cut(s) 8, 379, 410
XhoI CTCGAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.