Rroxscaffold_7G00179370

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000399
Physical Location & Seq
Reverse (-)
18974514 .. 18978348
3835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00179370.1

Sequence Viewer

Length: 321 bp
ATGTTTTACAACTTCAGAACAGGTAAGATCTGCAAACTATATCTGCCGGAAACCGAGAAAAAACTCTGTTATTCTTCACTAGGATGGCTGGGGACTGTATCTAAGCATATGAGGATTGTTGCTCCAGATATGCCTGGGGAAATTCTTGGACGTCCTAATCTTCACTACATATATCTAGTGGAATCAGCAGGGACTCTATTGGTGGTTTTATGTTTTGGCAATAAGTACGCAGAGAATTTAACTACTGGGTTTAGGATCTTTGAGGTCCCATTTGGTAATGGCAAATCATGGTGGAGCTCGGACATAAAGCTTGGGAAATAG

Protein Analysis

106

Amino Acids

12.06

Weight (kDa)

9.22

Isoelectric Point (pI)

32.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 154
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 2 cut(s) 141, 235
AcyI GRCGYC 1 cut(s) 151
AfaI GTAC 1 cut(s) 227
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 2 cut(s) 297, 310
AluI AGCT 2 cut(s) 297, 310
Alw21I GWGCWC 1 cut(s) 299
AlwI GGATC 1 cut(s) 263
ApoI RAATTY 2 cut(s) 141, 235
AspS9I GGNCC 1 cut(s) 265
AvaII GGWCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 299
BccI CCATC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 135
BfaI CTAG 2 cut(s) 80, 176
BglII AGATCT 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 135
BmrI ACTGGG 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 250
BseYI CCCAGC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 3 cut(s) 106, 205, 251
BsmFI GGGAC 3 cut(s) 106, 205, 251
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 2 cut(s) 27, 255
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 2 cut(s) 27, 255
BssNI GRCGYC 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 2 cut(s) 30, 258
BstMBI GATC 2 cut(s) 27, 255
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstX2I RGATCY 2 cut(s) 27, 255
BstYI RGATCY 2 cut(s) 27, 255
BtsCI GGATG 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 288
CviJI RGCY 3 cut(s) 88, 297, 310
CviKI_1 RGCY 3 cut(s) 88, 297, 310
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 29, 257
DpnII GATC 2 cut(s) 27, 255
Ecl136II GAGCTC 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 297
EcoICRI GAGCTC 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 299
FaeI CATG 1 cut(s) 291
FaiI YATR 9 cut(s) 40, 108, 110, 131, 170, 172, 211, 289, 305
FaqI GGGAC 3 cut(s) 106, 205, 251
FatI CATG 1 cut(s) 287
FauNDI CATATG 1 cut(s) 108
FokI GGATG 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 299
FspBI CTAG 2 cut(s) 80, 176
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 108
HapII CCGG 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 2 cut(s) 182, 193
HpaII CCGG 1 cut(s) 47
Hpy188I TCNGA 2 cut(s) 17, 301
Hpy188III TCNNGA 1 cut(s) 125
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 151
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 1 cut(s) 291
Kzo9I GATC 2 cut(s) 27, 255
LmnI GCTCC 2 cut(s) 127, 294
LpnPI CCDG 8 cut(s) 6, 60, 74, 120, 138, 147, 174, 231
MaeI CTAG 2 cut(s) 80, 176
MaeII ACGT 1 cut(s) 151
MalI GATC 2 cut(s) 29, 257
MboI GATC 2 cut(s) 27, 255
MboII GAAGA 2 cut(s) 66, 152
MflI RGATCY 2 cut(s) 27, 255
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 2 cut(s) 141, 235
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 2 cut(s) 105, 256
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 82
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
NdeI CATATG 1 cut(s) 108
NdeII GATC 2 cut(s) 27, 255
NlaIII CATG 1 cut(s) 291
NlaIV GGNNCC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 182
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PpuMI RGGWCCY 1 cut(s) 265
Psp124BI GAGCTC 1 cut(s) 299
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 265
PspPPI RGGWCCY 1 cut(s) 265
PsuI RGATCY 2 cut(s) 27, 255
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 82
SacI GAGCTC 1 cut(s) 299
SaqAI TTAA 1 cut(s) 239
Sau3AI GATC 2 cut(s) 27, 255
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 299
SetI ASST 5 cut(s) 25, 154, 267, 299, 312
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 82
Sse9I AATT 2 cut(s) 141, 235
SspMI CTAG 2 cut(s) 80, 176
SstI GAGCTC 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 154
TasI AATT 2 cut(s) 141, 235
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 2 cut(s) 141, 235
XspI CTAG 2 cut(s) 80, 176
ZraI GACGTC 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.