Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Reverse (-)

10605874 .. 10608018

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1057500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCTGACTGGGCGGGTCTTCCTCGAGAGCTTATCTTGTCTTTAGCTGAACGTATGGGTTCCTTGGAGGAGTTCATTGTTTTTGGTGCAGTTTGTAAATCGTGGAGATCAGTTGCGACCAAAGAAAACTACTTCACTTGTGAATTAGGACCGAAACATCAAGTCCCACTCCTTATTCTTCCACAGGAGAAGGGTGCTGCCACCCGCAAGTGTTACAACCTGAAGAAACGTAAGATTTGCCAACTAAATCTGTCCGAACTTGAGGACAAGCTTTTCCTCTCTTCTTTGGGATGGCTGCTGACCGTATCTAAAAAAGATTTGAAATTTTGTTTGATACATCCTCTAAATCATGCCCGGATTGAGCTGCCATGTCCGGTGCCTAATATGGCACCCAGCTTGTTGTCCAATTTTTCCATAAGGAAGTTTGTCTTATCAACCAGCCCGTCTTGGACCTCAAATTTCATCGTCATGGTTTATCAGTCTCAAACTGTGTCATTTTGCAGACCAGGACACAGTGAACATTGGATAAGTGTATGTCTGCACACACCAGGAATATTAAATGATCTAACTTATTATGAGGGACAACTTTATGCCGTGAACTATTATGGTCATGTTTTTATTTGTGATATTGAAGATCCTAAGCAAGCAGAAGTAAGGATTGTTGCTCCACAATTTCCAAAGGAATATTTGGGTCCTATGATGCAAATTAAAGTAGCTTATCTGGTGGAATCAGCCAGGGACCTGTTGGTGGTTTTGTGCTTTTTCAACCCGAAGACAAAGTTCCATGCAACTACCGGCTGCAGAGTTTTCAAGGTCCCATTTAGTGACGGCAGTTCATGGTTGGACTCGGAGTGGAGTAGAACCACATGCTTGAAGAGGAAGGGGAATGACCATAATGGATATAGCAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

305

Amino Acids

34.65

Weight (kDa)

8.75

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	72 - 291	4.9e-32	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	376, 388
AciI	CCGC	2 cut(s)	14, 205
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	2 cut(s)	323, 457
AcuI	CTGAAG	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	748
AgsI	TTSAA	5 cut(s)	322, 632, 766, 811, 874
AjnI	CCWGG	3 cut(s)	505, 547, 734
AluBI	AGCT	6 cut(s)	31, 47, 271, 364, 396, 716
AluI	AGCT	6 cut(s)	31, 47, 271, 364, 396, 716
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	24
ApeKI	GCWGC	4 cut(s)	197, 295, 364, 798
ApoI	RAATTY	2 cut(s)	323, 457
AspS9I	GGNCC	5 cut(s)	149, 450, 692, 739, 814
AsuC2I	CCSGG	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	5 cut(s)	149, 450, 692, 739, 814
BanI	GGYRCC	2 cut(s)	376, 388
BbsI	GAAGAC	2 cut(s)	11, 779
BbvI	GCAGC	4 cut(s)	184, 282, 351, 785
BccI	CCATC	1 cut(s)	285
BceAI	ACGGC	2 cut(s)	578, 844
BciT130I	CCWGG	3 cut(s)	507, 549, 736
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	799
BisI	GCNGC	4 cut(s)	198, 296, 365, 799
BlsI	GCNGC	4 cut(s)	199, 297, 366, 800
Bme1390I	CCNGG	4 cut(s)	355, 507, 549, 736
Bme18I	GGWCC	5 cut(s)	149, 450, 692, 739, 814
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	5 cut(s)	149, 450, 692, 739, 814
BmiI	GGNNCC	6 cut(s)	61, 378, 390, 693, 740, 816
BmrFI	CCNGG	4 cut(s)	355, 507, 549, 736
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	690
BmuI	ACTGGG	1 cut(s)	19
BpiI	GAAGAC	2 cut(s)	11, 779
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	63, 735
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	748
Bse118I	RCCGGY	1 cut(s)	794
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	3 cut(s)	507, 549, 736
BseDI	CCNNGG	2 cut(s)	63, 735
BseGI	GGATG	2 cut(s)	296, 337
BseLI	CCNNNNNNNGG	1 cut(s)	748
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	4 cut(s)	184, 282, 351, 785
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	2 cut(s)	108, 524
BshNI	GGYRCC	2 cut(s)	376, 388
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	3 cut(s)	355, 374, 795
BslFI	GGGAC	4 cut(s)	149, 594, 752, 800
BslI	CCNNNNNNNGG	1 cut(s)	748
BsmAI	GTCTC	1 cut(s)	486
BsmFI	GGGAC	4 cut(s)	149, 594, 752, 800
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	107, 562, 634
BspACI	CCGC	2 cut(s)	14, 205
BspLI	GGNNCC	6 cut(s)	61, 378, 390, 693, 740, 816
BspMAI	CTGCAG	1 cut(s)	803
BspPI	GGATC	1 cut(s)	629
BspT107I	GGYRCC	2 cut(s)	376, 388
BsrFI	RCCGGY	1 cut(s)	794
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	2 cut(s)	63, 735
BssMI	GATC	3 cut(s)	107, 562, 634
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	3 cut(s)	507, 549, 736
Bst4CI	ACNGT	3 cut(s)	304, 490, 515
Bst6I	CTCTTC	2 cut(s)	286, 869
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	1 cut(s)	639
BstF5I	GGATG	2 cut(s)	296, 337
BstKTI	GATC	3 cut(s)	110, 565, 637
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	3 cut(s)	107, 562, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	3 cut(s)	507, 549, 736
BstNSI	RCATGY	1 cut(s)	870
BstSCI	CCNGG	4 cut(s)	353, 505, 547, 734
BstSFI	CTRYAG	1 cut(s)	799
BstV1I	GCAGC	4 cut(s)	184, 282, 351, 785
BstV2I	GAAGAC	2 cut(s)	11, 779
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
BtsCI	GGATG	2 cut(s)	296, 337
BtsIMutI	CAGTG	1 cut(s)	520
Cac8I	GCNNGC	1 cut(s)	645
Cfr10I	RCCGGY	1 cut(s)	794
Cfr13I	GGNCC	5 cut(s)	149, 450, 692, 739, 814
CviAII	CATG	7 cut(s)	350, 369, 469, 611, 785, 837, 867
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	3 cut(s)	109, 564, 636
DpnII	GATC	3 cut(s)	107, 562, 634
Eam1104I	CTCTTC	2 cut(s)	286, 869
EarI	CTCTTC	2 cut(s)	286, 869
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	5 cut(s)	149, 450, 692, 739, 814
Eco57I	CTGAAG	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	24
EcoO109I	RGGNCCY	3 cut(s)	692, 739, 814
EcoRII	CCWGG	3 cut(s)	505, 547, 734
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	7 cut(s)	353, 372, 472, 614, 788, 840, 870
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	4 cut(s)	149, 594, 752, 800
FatI	CATG	7 cut(s)	349, 368, 468, 610, 784, 836, 866
FauI	CCCGC	2 cut(s)	7, 212
Fnu4HI	GCNGC	4 cut(s)	198, 296, 365, 799
FokI	GGATG	2 cut(s)	303, 324
Fsp4HI	GCNGC	4 cut(s)	198, 296, 365, 799
GluI	GCNGC	4 cut(s)	198, 296, 365, 799
GsaI	CCCAGC	1 cut(s)	396
HapII	CCGG	3 cut(s)	355, 374, 795
Hin1II	CATG	7 cut(s)	353, 372, 472, 614, 788, 840, 870
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	728, 845
HpaII	CCGG	3 cut(s)	355, 374, 795
Hpy166II	GTNNAC	2 cut(s)	518, 598
Hpy188I	TCNGA	2 cut(s)	256, 850
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	2 cut(s)	518, 598
HpyAV	CCTTC	2 cut(s)	184, 874
HpyCH4III	ACNGT	3 cut(s)	304, 490, 515
HpyCH4IV	ACGT	2 cut(s)	52, 229
HpyCH4V	TGCA	6 cut(s)	89, 501, 541, 703, 788, 801
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	2 cut(s)	52, 229
Hsp92II	CATG	7 cut(s)	353, 372, 472, 614, 788, 840, 870
Kzo9I	GATC	3 cut(s)	107, 562, 634
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	4 cut(s)	184, 282, 351, 785
LweI	GCATC	1 cut(s)	690
MaeII	ACGT	2 cut(s)	52, 229
MaeIII	GTNAC	2 cut(s)	212, 824
MalI	GATC	3 cut(s)	109, 564, 636
MboI	GATC	3 cut(s)	107, 562, 634
MboII	GAAGA	7 cut(s)	11, 170, 235, 273, 644, 784, 886
MflI	RGATCY	1 cut(s)	634
MluCI	AATT	6 cut(s)	143, 323, 406, 457, 671, 705
MlyI	GAGTC	1 cut(s)	839
MmeI	TCCRAC	1 cut(s)	822
MnlI	CCTC	8 cut(s)	33, 61, 256, 287, 351, 463, 571, 870
MseI	TTAA	2 cut(s)	557, 708
MslI	CAYNNNNRTG	1 cut(s)	467
MspI	CCGG	3 cut(s)	355, 374, 795
MspR9I	CCNGG	4 cut(s)	355, 507, 549, 736
MvaI	CCWGG	3 cut(s)	507, 549, 736
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	107, 562, 634
NlaIII	CATG	7 cut(s)	353, 372, 472, 614, 788, 840, 870
NlaIV	GGNNCC	6 cut(s)	61, 378, 390, 693, 740, 816
NmuCI	GTSAC	1 cut(s)	824
NspI	RCATGY	1 cut(s)	870
PaeR7I	CTCGAG	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	728
PkrI	GCNGC	4 cut(s)	199, 297, 366, 800
PleI	GAGTC	1 cut(s)	839
PpsI	GAGTC	1 cut(s)	839
PpuMI	RGGWCCY	3 cut(s)	692, 739, 814
Psp5II	RGGWCCY	3 cut(s)	692, 739, 814
Psp6I	CCWGG	3 cut(s)	505, 547, 734
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	3 cut(s)	505, 547, 734
PspN4I	GGNNCC	6 cut(s)	61, 378, 390, 693, 740, 816
PspPI	GGNCC	5 cut(s)	149, 450, 692, 739, 814
PspPPI	RGGWCCY	3 cut(s)	692, 739, 814
PstI	CTGCAG	1 cut(s)	803
PsuI	RGATCY	1 cut(s)	634
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	2 cut(s)	557, 708
SatI	GCNGC	4 cut(s)	198, 296, 365, 799
Sau3AI	GATC	3 cut(s)	107, 562, 634
Sau96I	GGNCC	5 cut(s)	149, 450, 692, 739, 814
SchI	GAGTC	1 cut(s)	839
ScrFI	CCNGG	4 cut(s)	355, 507, 549, 736
SfaNI	GCATC	1 cut(s)	690
SfcI	CTRYAG	1 cut(s)	799
Sfr274I	CTCGAG	1 cut(s)	24
SinI	GGWCC	5 cut(s)	149, 450, 692, 739, 814
SlaI	CTCGAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	2 cut(s)	24, 260
SmoI	CTYRAG	2 cut(s)	24, 260
Sse9I	AATT	6 cut(s)	143, 323, 406, 457, 671, 705
SsiI	CCGC	2 cut(s)	14, 205
SspI	AATATT	2 cut(s)	555, 686
StyD4I	CCNGG	4 cut(s)	353, 505, 547, 734
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	304, 490, 515
TaiI	ACGT	2 cut(s)	55, 232
TaqI	TCGA	1 cut(s)	25
TaqII	GACCGA	1 cut(s)	166
TasI	AATT	6 cut(s)	143, 323, 406, 457, 671, 705
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	2 cut(s)	557, 708
Tru9I	TTAA	2 cut(s)	557, 708
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	4 cut(s)	197, 295, 364, 798
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	3 cut(s)	64, 451, 825
TspRI	CASTG	1 cut(s)	520
VpaK11BI	GGWCC	5 cut(s)	149, 450, 692, 739, 814
XapI	RAATTY	2 cut(s)	323, 457
XceI	RCATGY	1 cut(s)	870
XcmI	CCANNNNNNNNNTGG	1 cut(s)	742
XhoI	CTCGAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.