RLG00000012316

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000399
Physical Location & Seq
Reverse (-)
17427149 .. 17427865
717 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012316

Sequence Viewer

Length: 717 bp
ATGCTTTCGTTAGAGGATTTTACTTCTTTTGGGGCGGTTTGCAAATCATGGAGATCAGTTGCGACCAGGGAAGTGTTCAATAGCAAACTAGGACCAACGCATCAAGCTCCTTTCCTCATCCTTTCGAAGAAGGAGGCTTCTGCAATCCGTATGTTTTTCAACTTCAGAACAGGTAAGATCTGCAAACTATATCTGCCGGAAACCGAGAAAAAACTCTCGTATTCTTCACTAGGATGGCTGGGGATTGTATCTAAGCATATGAGAATTGTTGCTCCAGAGATGCCTGAGGAAATTCTTGGACGTCCTAATCTTCACTACATATATCTAGTGGAATCAGCAGGGACTCTATTGGCGGTTTTATGTTTTGGCAATAAGTACGCACAGAATTTAACTACTGGATTTAGTATCTTTGAGGTCCCATTTGGTAATGGCAAATCATGGTGGAGCTCGGATATAAAGCTTGGAAATAGAACCCTGTTCTTGGGTTGCTGTGGTTCTTCTTTCTCTGTTCAGACCTCAAAGTATTCAGGATGCAAGGGAAATTGCATATACTTCATCAATCATTATGTGTCTGTCCCTCGTATTGAGGACATGGATTTAGGTATTTTTCACATGAAGGATGGAAAGATCGAGAGAAAGTTTGGCAAATTCTGTAATATTAGTTACAGGGAAAAATGGCTTCGGACATCACATTTATGGATTCAACCTAGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

239

Amino Acids

27.14

Weight (kDa)

9.37

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 89 - 203 1.4e-17 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 304
AciI CCGC 2 cut(s) 35, 353
AcsI RAATTY 3 cut(s) 291, 385, 647
AcuI CTGAAG 1 cut(s) 148
AcyI GRCGYC 1 cut(s) 301
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 3 cut(s) 79, 160, 704
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 3 cut(s) 107, 447, 460
AluI AGCT 3 cut(s) 107, 447, 460
Alw21I GWGCWC 1 cut(s) 449
ApoI RAATTY 3 cut(s) 291, 385, 647
AspS9I GGNCC 2 cut(s) 92, 415
AsuII TTCGAA 1 cut(s) 125
AvaII GGWCC 2 cut(s) 92, 415
AxyI CCTNAGG 1 cut(s) 285
BanII GRGCYC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 449
BccI CCATC 2 cut(s) 228, 614
BciT130I CCWGG 1 cut(s) 67
BfaI CTAG 4 cut(s) 89, 230, 326, 708
BglII AGATCT 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 2 cut(s) 92, 415
BmgT120I GGNCC 2 cut(s) 92, 415
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 3 cut(s) 109, 270, 521
BpmI CTGGAG 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 1 cut(s) 400
Bse21I CCTNAGG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 4 cut(s) 117, 239, 536, 625
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 400
BseYI CCCAGC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 449
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 3 cut(s) 355, 401, 560
BslI CCNNNNNNNGG 1 cut(s) 481
BsmFI GGGAC 3 cut(s) 355, 401, 560
Bsp119I TTCGAA 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 3 cut(s) 53, 177, 627
BspACI CCGC 2 cut(s) 35, 353
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 417
BspT104I TTCGAA 1 cut(s) 125
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 3 cut(s) 53, 177, 627
BssNI GRCGYC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 301
BstBI TTCGAA 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 252, 285
BstF5I GGATG 4 cut(s) 117, 239, 536, 625
BstKTI GATC 3 cut(s) 56, 180, 630
BstMBI GATC 3 cut(s) 53, 177, 627
BstNI CCWGG 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 285
BtsCI GGATG 4 cut(s) 117, 239, 536, 625
Cfr13I GGNCC 2 cut(s) 92, 415
Csp6I GTAC 1 cut(s) 376
CviAII CATG 4 cut(s) 48, 438, 592, 613
CviJI RGCY 6 cut(s) 107, 137, 238, 447, 460, 679
CviKI_1 RGCY 6 cut(s) 107, 137, 238, 447, 460, 679
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 2 cut(s) 252, 285
DpnI GATC 3 cut(s) 55, 179, 629
DpnII GATC 3 cut(s) 53, 177, 627
Ecl136II GAGCTC 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 92, 415
Eco53kI GAGCTC 1 cut(s) 447
Eco57I CTGAAG 1 cut(s) 148
Eco81I CCTNAGG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 449
FaeI CATG 4 cut(s) 51, 441, 595, 616
FaqI GGGAC 3 cut(s) 355, 401, 560
FatI CATG 4 cut(s) 47, 437, 591, 612
FauNDI CATATG 1 cut(s) 258
FokI GGATG 4 cut(s) 104, 246, 543, 632
FriOI GRGCYC 1 cut(s) 449
FspBI CTAG 4 cut(s) 89, 230, 326, 708
GsaI CCCAGC 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 258
HapII CCGG 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 301
Hin1II CATG 4 cut(s) 51, 441, 595, 616
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 3 cut(s) 332, 343, 700
HpaII CCGG 1 cut(s) 197
Hpy188I TCNGA 5 cut(s) 167, 451, 513, 684, 716
Hpy188III TCNNGA 3 cut(s) 275, 528, 631
HpyAV CCTTC 2 cut(s) 124, 610
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 5 cut(s) 42, 143, 183, 534, 546
HpyF3I CTNAG 2 cut(s) 252, 285
HpySE526I ACGT 1 cut(s) 301
Hsp92I GRCGYC 1 cut(s) 301
Hsp92II CATG 4 cut(s) 51, 441, 595, 616
Kzo9I GATC 3 cut(s) 53, 177, 627
LmnI GCTCC 3 cut(s) 112, 277, 444
LweI GCATC 3 cut(s) 109, 270, 521
MaeI CTAG 4 cut(s) 89, 230, 326, 708
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 662
MalI GATC 3 cut(s) 55, 179, 629
MboI GATC 3 cut(s) 53, 177, 627
MboII GAAGA 4 cut(s) 139, 216, 302, 489
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 5 cut(s) 264, 291, 385, 541, 647
MlyI GAGTC 1 cut(s) 337
MnlI CCTC 8 cut(s) 7, 125, 127, 280, 406, 526, 580, 588
MseI TTAA 1 cut(s) 389
MslI CAYNNNNRTG 2 cut(s) 232, 694
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 67
NdeI CATATG 1 cut(s) 258
NdeII GATC 3 cut(s) 53, 177, 627
NlaIII CATG 4 cut(s) 51, 441, 595, 616
NlaIV GGNNCC 1 cut(s) 417
NspV TTCGAA 1 cut(s) 125
PfeI GAWTC 2 cut(s) 332, 700
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 415
Psp124BI GAGCTC 1 cut(s) 449
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 238
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 2 cut(s) 92, 415
PspPPI RGGWCCY 1 cut(s) 415
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 2 cut(s) 232, 694
SacI GAGCTC 1 cut(s) 449
SaqAI TTAA 1 cut(s) 389
Sau3AI GATC 3 cut(s) 53, 177, 627
Sau96I GGNCC 2 cut(s) 92, 415
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 449
SetI ASST 9 cut(s) 109, 175, 304, 417, 449, 462, 518, 604, 709
SfaNI GCATC 3 cut(s) 109, 270, 521
SfuI TTCGAA 1 cut(s) 125
SinI GGWCC 2 cut(s) 92, 415
SmiMI CAYNNNNRTG 2 cut(s) 232, 694
Sse9I AATT 5 cut(s) 264, 291, 385, 541, 647
SsiI CCGC 2 cut(s) 35, 353
SspI AATATT 1 cut(s) 658
SspMI CTAG 4 cut(s) 89, 230, 326, 708
SstI GAGCTC 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 65
TaiI ACGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 125, 630
TasI AATT 5 cut(s) 264, 291, 385, 541, 647
TfiI GAWTC 2 cut(s) 332, 700
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TspDTI ATGAA 2 cut(s) 544, 629
TspGWI ACGGA 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 92, 415
XapI RAATTY 3 cut(s) 291, 385, 647
XspI CTAG 4 cut(s) 89, 230, 326, 708
ZraI GACGTC 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.