Rmu_sc0000366.1_g000019

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000366.1
OG0000399
Physical Location & Seq
Reverse (-)
101168 .. 102253
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000366.1_g000019.1.cds

Sequence Viewer

Length: 1086 bp
atggaacaatcggactggtccgttctctttccagagttgattgacaaaatctcaaaaaccttgatagacatggatgatatcattaatgtcggacgagtttcaaagacatggaaatcagccactgaaatacatcgccgtgatgtcattgaggctccactgattctgataccgatgaagaagaattcgattcagagcgagttttttaaccttgcacttaatgaggtatacttttctaaagtgccagagctccagggaaagctgttttgctattcttcgtctggcggatggctcgtgactgtctctgagtacaatgatctggatttgataaaccccctgaatcataacaagtatgagctgccagtttccaagttcctgagaaattcgatacccaagaagttcgttctttcaaacgcttctccaacctcttgcgtggttatggccctttacatatgtggcactctagaattttgcaatctgagagaggataaaacttggacaagtctgctttcggttggggcagttggaagatcagctgatctgacctgttgccggggaaaattctatgtgttgggtgttaagaatatttttgtttgtgacctggaagttcccatggcaaagattgtgggtcaggagattccggaggaactgagatgtcctctgggaaagaggtatcttgtggagtcatcaggaactctattgatggttctgagtgttaagcagcctggcaccagtgattctccgttcagaatctttcagatttcacttgctgatcataaatgttggacggactgtgaaatacacaccttggggagcagagcgattttcctaggcgaggatcactcgttttctgttgatgccaccaacaaccttagtgtcaaagccaactgcatttactttctgtatgatcccccttatgagcaggaacgagttgaaatgggaatttttgacctcgaacagagaaagattgagcggccctacaatctccaatccagtggaatcgatgcatatcagtctcatgtaccccaccatctctggcttcaaaaacgtttgtcagttaagctgcctaaaccaccatctcctgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

361

Amino Acids

40.91

Weight (kDa)

6.27

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 725
AccBSI CCGCTC 1 cut(s) 970
AccI GTMKAC 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 637
AciI CCGC 2 cut(s) 282, 970
AclI AACGTT 1 cut(s) 1045
AclWI GGATC 2 cut(s) 843, 899
AcsI RAATTY 5 cut(s) 181, 379, 464, 557, 939
AfaI GTAC 2 cut(s) 308, 1020
AfiI CCNNNNNNNGG 2 cut(s) 549, 832
AgsI TTSAA 4 cut(s) 102, 408, 932, 1040
AjnI CCWGG 3 cut(s) 249, 597, 721
AluBI AGCT 5 cut(s) 247, 259, 355, 533, 1060
AluI AGCT 5 cut(s) 247, 259, 355, 533, 1060
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 2 cut(s) 304, 1017
AlwI GGATC 2 cut(s) 843, 899
AlwNI CAGNNNCTG 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 637
AoxI GGCC 2 cut(s) 438, 971
ApeKI GCWGC 3 cut(s) 355, 718, 1060
ApoI RAATTY 5 cut(s) 181, 379, 464, 557, 939
AseI ATTAAT 1 cut(s) 84
AspA2I CCTAGG 1 cut(s) 826
AspS9I GGNCC 3 cut(s) 18, 439, 972
AsuC2I CCSGG 1 cut(s) 551
AvaII GGWCC 1 cut(s) 18
AvrII CCTAGG 1 cut(s) 826
BanI GGYRCC 1 cut(s) 725
BanII GRGCYC 1 cut(s) 249
BauI CACGAG 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 342, 730, 1047
BccI CCATC 4 cut(s) 279, 694, 1035, 1081
BceAI ACGGC 1 cut(s) 120
BciT130I CCWGG 3 cut(s) 251, 599, 723
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 2 cut(s) 304, 1017
BfaI CTAG 2 cut(s) 461, 827
BisI GCNGC 4 cut(s) 356, 719, 971, 1061
BlnI CCTAGG 1 cut(s) 826
BlsI GCNGC 4 cut(s) 357, 720, 972, 1062
Bme1390I CCNGG 4 cut(s) 251, 551, 599, 723
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 3 cut(s) 18, 439, 972
BmiI GGNNCC 2 cut(s) 153, 727
BmrFI CCNGG 4 cut(s) 251, 551, 599, 723
BmsI GCATC 2 cut(s) 844, 991
BplI GAGNNNNNCTC 4 cut(s) 640, 672, 824, 856
BpmI CTGGAG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 551
Bsa29I ATCGAT 1 cut(s) 999
BsaBI GATNNNNATC 1 cut(s) 1005
BsaJI CCNNGG 5 cut(s) 250, 550, 609, 804, 826
BsaWI WCCGGW 1 cut(s) 637
Bsc4I CCNNNNNNNGG 2 cut(s) 549, 832
Bse1I ACTGG 4 cut(s) 20, 359, 729, 990
Bse8I GATNNNNATC 1 cut(s) 1005
BseAI TCCGGA 1 cut(s) 637
BseBI CCWGG 3 cut(s) 251, 599, 723
BseCI ATCGAT 1 cut(s) 999
BseDI CCNNGG 5 cut(s) 250, 550, 609, 804, 826
BseGI GGATG 2 cut(s) 79, 290
BseJI GATNNNNATC 1 cut(s) 1005
BseLI CCNNNNNNNGG 2 cut(s) 549, 832
BseMII CTCAG 5 cut(s) 294, 365, 467, 638, 698
BseNI ACTGG 4 cut(s) 20, 359, 729, 990
BseXI GCAGC 3 cut(s) 342, 730, 1047
BshFI GGCC 2 cut(s) 440, 973
BshNI GGYRCC 1 cut(s) 725
BshVI ATCGAT 1 cut(s) 999
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 2 cut(s) 550, 638
BslI CCNNNNNNNGG 2 cut(s) 549, 832
BsmAI GTCTC 2 cut(s) 304, 1017
BsnI GGCC 2 cut(s) 440, 973
Bsp1286I GDGCHC 1 cut(s) 249
Bsp13I TCCGGA 1 cut(s) 637
Bsp143I GATC 6 cut(s) 313, 527, 535, 769, 835, 904
Bsp19I CCATGG 1 cut(s) 609
BspACI CCGC 2 cut(s) 282, 970
BspANI GGCC 2 cut(s) 440, 973
BspCNI CTCAG 5 cut(s) 295, 366, 468, 639, 699
BspDI ATCGAT 1 cut(s) 999
BspEI TCCGGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 153, 727
BspPI GGATC 2 cut(s) 843, 899
BspT107I GGYRCC 1 cut(s) 725
BsrBI CCGCTC 1 cut(s) 970
BsrI ACTGG 4 cut(s) 20, 359, 729, 990
BssECI CCNNGG 5 cut(s) 250, 550, 609, 804, 826
BssMI GATC 6 cut(s) 313, 527, 535, 769, 835, 904
BssNAI GTATAC 1 cut(s) 226
BssSI CACGAG 1 cut(s) 290
BssT1I CCWWGG 3 cut(s) 609, 804, 826
Bst1107I GTATAC 1 cut(s) 226
Bst2BI CACGAG 1 cut(s) 290
Bst2UI CCWGG 3 cut(s) 251, 599, 723
Bst4CI ACNGT 2 cut(s) 298, 791
BstDEI CTNAG 6 cut(s) 303, 374, 476, 647, 707, 869
BstDSI CCRYGG 1 cut(s) 609
BstENI CCTNNNNNAGG 1 cut(s) 830
BstF5I GGATG 2 cut(s) 79, 290
BstKTI GATC 6 cut(s) 316, 530, 538, 772, 838, 907
BstMAI GTCTC 2 cut(s) 304, 1017
BstMBI GATC 6 cut(s) 313, 527, 535, 769, 835, 904
BstNI CCWGG 3 cut(s) 251, 599, 723
BstSCI CCNGG 4 cut(s) 249, 549, 597, 721
BstV1I GCAGC 3 cut(s) 342, 730, 1047
BstXI CCANNNNNNTGG 1 cut(s) 992
BstZ17I GTATAC 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 999
BsuRI GGCC 2 cut(s) 440, 973
BsuTUI ATCGAT 1 cut(s) 999
BtgI CCRYGG 1 cut(s) 609
BtgZI GCGATG 1 cut(s) 116
BtsCI GGATG 2 cut(s) 79, 290
BtsIMutI CAGTG 4 cut(s) 120, 155, 736, 997
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 3 cut(s) 18, 439, 972
ClaI ATCGAT 1 cut(s) 999
Csp6I GTAC 2 cut(s) 307, 1019
CspCI CAANNNNNGTGG 2 cut(s) 603, 638
CviAII CATG 4 cut(s) 70, 108, 610, 1016
CviQI GTAC 2 cut(s) 307, 1019
DdeI CTNAG 6 cut(s) 303, 374, 476, 647, 707, 869
DpnI GATC 6 cut(s) 315, 529, 537, 771, 837, 906
DpnII GATC 6 cut(s) 313, 527, 535, 769, 835, 904
EciI GGCGGA 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 3 cut(s) 609, 804, 826
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoNI CCTNNNNNAGG 1 cut(s) 830
EcoRI GAATTC 1 cut(s) 181
EcoRII CCWGG 3 cut(s) 249, 597, 721
EcoRV GATATC 1 cut(s) 79
EcoT14I CCWWGG 3 cut(s) 609, 804, 826
EcoT22I ATGCAT 1 cut(s) 1006
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 3 cut(s) 609, 804, 826
FaeI CATG 4 cut(s) 73, 111, 613, 1019
FatI CATG 4 cut(s) 69, 107, 609, 1015
FauNDI CATATG 1 cut(s) 449
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 4 cut(s) 356, 719, 971, 1061
FokI GGATG 2 cut(s) 86, 297
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 356, 719, 971, 1061
FspBI CTAG 2 cut(s) 461, 827
GluI GCNGC 4 cut(s) 356, 719, 971, 1061
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 2 cut(s) 440, 973
HapII CCGG 2 cut(s) 550, 638
Hin1II CATG 4 cut(s) 73, 111, 613, 1019
HinfI GANTC 8 cut(s) 160, 187, 337, 634, 680, 734, 747, 996
HpaII CCGG 2 cut(s) 550, 638
Hpy166II GTNNAC 1 cut(s) 226
Hpy188III TCNNGA 8 cut(s) 32, 292, 317, 373, 461, 629, 638, 687
Hpy8I GTNNAC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 298, 791
HpyCH4IV ACGT 1 cut(s) 1045
HpyCH4V TGCA 4 cut(s) 212, 471, 888, 1004
HpyF3I CTNAG 6 cut(s) 303, 374, 476, 647, 707, 869
HpySE526I ACGT 1 cut(s) 1045
Hsp92II CATG 4 cut(s) 73, 111, 613, 1019
Kpn2I TCCGGA 1 cut(s) 637
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 6 cut(s) 313, 527, 535, 769, 835, 904
LmnI GCTCC 3 cut(s) 157, 252, 810
Lsp1109I GCAGC 3 cut(s) 342, 730, 1047
LweI GCATC 2 cut(s) 844, 991
MaeI CTAG 2 cut(s) 461, 827
MaeII ACGT 1 cut(s) 1045
MaeIII GTNAC 2 cut(s) 292, 593
MalI GATC 6 cut(s) 315, 529, 537, 771, 837, 906
MbiI CCGCTC 1 cut(s) 970
MboI GATC 6 cut(s) 313, 527, 535, 769, 835, 904
MboII GAAGA 4 cut(s) 187, 190, 264, 537
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 5 cut(s) 181, 379, 464, 557, 939
MlyI GAGTC 1 cut(s) 689
MmeI TCCRAC 4 cut(s) 70, 443, 502, 761
MnlI CCTC 9 cut(s) 142, 214, 433, 475, 634, 660, 666, 826, 959
Mph1103I ATGCAT 1 cut(s) 1006
MroI TCCGGA 1 cut(s) 637
MseI TTAA 6 cut(s) 84, 204, 216, 576, 714, 1056
MslI CAYNNNNRTG 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 2 cut(s) 550, 638
MspR9I CCNGG 4 cut(s) 251, 551, 599, 723
MvaI CCWGG 3 cut(s) 251, 599, 723
NciI CCSGG 1 cut(s) 551
NcoI CCATGG 1 cut(s) 609
NdeI CATATG 1 cut(s) 449
NdeII GATC 6 cut(s) 313, 527, 535, 769, 835, 904
NlaIII CATG 4 cut(s) 73, 111, 613, 1019
NlaIV GGNNCC 2 cut(s) 153, 727
NmuCI GTSAC 2 cut(s) 292, 593
NsiI ATGCAT 1 cut(s) 1006
PfeI GAWTC 7 cut(s) 160, 187, 337, 634, 734, 747, 996
PkrI GCNGC 4 cut(s) 357, 720, 972, 1062
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
PshBI ATTAAT 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 249
Psp1406I AACGTT 1 cut(s) 1045
Psp6I CCWGG 3 cut(s) 249, 597, 721
PspGI CCWGG 3 cut(s) 249, 597, 721
PspN4I GGNNCC 2 cut(s) 153, 727
PspPI GGNCC 3 cut(s) 18, 439, 972
PstNI CAGNNNCTG 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 2 cut(s) 308, 1020
RsaNI GTAC 2 cut(s) 307, 1019
RseI CAYNNNNRTG 1 cut(s) 135
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 6 cut(s) 84, 204, 216, 576, 714, 1056
SatI GCNGC 4 cut(s) 356, 719, 971, 1061
Sau3AI GATC 6 cut(s) 313, 527, 535, 769, 835, 904
Sau96I GGNCC 3 cut(s) 18, 439, 972
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 4 cut(s) 251, 551, 599, 723
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 2 cut(s) 844, 991
SinI GGWCC 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 5 cut(s) 181, 379, 464, 557, 939
SsiI CCGC 2 cut(s) 282, 970
SspI AATATT 1 cut(s) 583
SspMI CTAG 2 cut(s) 461, 827
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 4 cut(s) 249, 549, 597, 721
StyI CCWWGG 3 cut(s) 609, 804, 826
TaaI ACNGT 2 cut(s) 298, 791
TaiI ACGT 1 cut(s) 1048
TaqI TCGA 4 cut(s) 185, 383, 951, 999
TasI AATT 5 cut(s) 181, 379, 464, 557, 939
TatI WGTACW 1 cut(s) 306
TauI GCSGC 1 cut(s) 973
TfiI GAWTC 7 cut(s) 160, 187, 337, 634, 734, 747, 996
Tru1I TTAA 6 cut(s) 84, 204, 216, 576, 714, 1056
Tru9I TTAA 6 cut(s) 84, 204, 216, 576, 714, 1056
TscAI CASTG 4 cut(s) 127, 162, 736, 997
TseFI GTSAC 2 cut(s) 292, 593
TseI GCWGC 3 cut(s) 355, 718, 1060
Tsp45I GTSAC 2 cut(s) 292, 593
TspDTI ATGAA 1 cut(s) 188
TspGWI ACGGA 3 cut(s) 10, 729, 800
TspRI CASTG 4 cut(s) 127, 162, 736, 997
VpaK11BI GGWCC 1 cut(s) 18
VspI ATTAAT 1 cut(s) 84
XagI CCTNNNNNAGG 1 cut(s) 830
XapI RAATTY 5 cut(s) 181, 379, 464, 557, 939
XbaI TCTAGA 1 cut(s) 460
XmaJI CCTAGG 1 cut(s) 826
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 461, 827
Zsp2I ATGCAT 1 cut(s) 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.