Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001105.1

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Reverse (-)

32658 .. 33872

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001105.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggcgcccaactggtcgtacgatcttcccgaagagcttatcatctctgttgccaaacggctgacaggttccttgcaggattttatttttttcggtgcagtttgcaaatcatggagatcagccaccactgaggtaaaggagaaaaaccctaataatattgcattgagattattaacacatcaagttcctctccttttgcttccactttcttgtggaatcttggtcagcaacccggttcctaaaattatcaggccgcctcccaaggaaaagagtgagggtttgaatgaggcagctgaattttacagtctgaagggaaaaggtaataagatcagttacaaacttaacctaccaaaaatattaccaaaagcaagaatgaggatatgcttttcatcttttggatggctggtgattgtatctaaaactgaagggtgtgaatggagtctggtacatcctttaaatcatgccaaaattgagctcccagatgtactggggtctttgccagccagcgttgtttctgggttccgggtagggaagtttgccttatcatcgagcccttcttggacatcggattacatagtcatgtttcaatcaggtcaaagatttggtttttgcaggccagggctgggtgaaaattggaaatacaaagtatcaaggggagatttagtaagggatctgagttattataaaggacagttctatttcgtgcacctttccagccgcatttcagtttttgatattgacaaagaagaaataaggcttgttgctccagaatttccaaaggaacaacttttaggtcctaatgtgcttattaaagagcactatttagtggaatcagcgggggttcttttggtggttctgttcactaccactaccaccaagtgtaaagaccaaggattaacatttggctgcagggtttttgaggtcccatttacaaacagcaaatcgtggtcggactcggaggttaggagcttggggaacagaaccattttcctaagtaaatgtagttcttccttctcaatcgaggcatcagactattctggattatgtaaggccaattccatctacttcatgaataataaggtagtccttccgagacaaagcagagatatgggtgtttttaatatgaaggatgggacaatcacccgagactttgacaaattctttgattatgaagaattaagaggattccattcatggattcaaccgagtttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

404

Amino Acids

45.61

Weight (kDa)

9.12

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	684
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	3 cut(s)	254, 718, 836
AclWI	GGATC	1 cut(s)	678
AcsI	RAATTY	3 cut(s)	296, 770, 1157
AcuI	CTGAAG	2 cut(s)	329, 444
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	879
AfaI	GTAC	3 cut(s)	20, 447, 486
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	283, 587, 1202
AjnI	CCWGG	1 cut(s)	616
AluBI	AGCT	4 cut(s)	37, 293, 475, 969
AluI	AGCT	4 cut(s)	37, 293, 475, 969
Alw21I	GWGCWC	3 cut(s)	477, 708, 819
Alw26I	GTCTC	2 cut(s)	1087, 1140
Alw44I	GTGCAC	1 cut(s)	704
AlwI	GGATC	1 cut(s)	678
Ama87I	CYCGRG	1 cut(s)	1143
AoxI	GGCC	3 cut(s)	251, 614, 1050
ApaLI	GTGCAC	1 cut(s)	704
ApeKI	GCWGC	2 cut(s)	290, 906
ApoI	RAATTY	3 cut(s)	296, 770, 1157
ArsI	GACNNNNNNTTYG	2 cut(s)	1145, 1177
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	794, 922
AsuC2I	CCSGG	2 cut(s)	233, 524
AsuHPI	GGTGA	3 cut(s)	418, 638, 1132
AvaI	CYCGRG	1 cut(s)	1143
AvaII	GGWCC	2 cut(s)	794, 922
BaeGI	GKGCMC	1 cut(s)	708
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	477, 554
Bbv12I	GWGCWC	3 cut(s)	477, 708, 819
BbvI	GCAGC	2 cut(s)	302, 893
BccI	CCATC	3 cut(s)	393, 1067, 1124
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	618
BcnI	CCSGG	2 cut(s)	233, 524
BcoDI	GTCTC	2 cut(s)	1087, 1140
BfmI	CTRYAG	1 cut(s)	907
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	4 cut(s)	254, 291, 718, 907
BlsI	GCNGC	4 cut(s)	255, 292, 719, 908
Bme1390I	CCNGG	3 cut(s)	233, 524, 618
Bme18I	GGWCC	2 cut(s)	794, 922
BmeT110I	CYCGRG	1 cut(s)	1143
BmgT120I	GGNCC	2 cut(s)	794, 922
BmiI	GGNNCC	5 cut(s)	6, 70, 237, 521, 924
BmrFI	CCNGG	3 cut(s)	233, 524, 618
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	1 cut(s)	1034
BmuI	ACTGGG	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	750
BpuMI	CCSGG	2 cut(s)	233, 524
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	261, 617, 889
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse1I	ACTGG	2 cut(s)	17, 492
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	3 cut(s)	261, 617, 889
BseGI	GGATG	3 cut(s)	404, 448, 1135
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMII	CTCAG	2 cut(s)	120, 665
BseNI	ACTGG	2 cut(s)	17, 492
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	2 cut(s)	302, 893
BseYI	CCCAGC	1 cut(s)	622
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	253, 616, 1052
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	3 cut(s)	477, 708, 819
BsiHKCI	CYCGRG	1 cut(s)	1143
BsiSI	CCGG	2 cut(s)	233, 523
BsiWI	CGTACG	1 cut(s)	18
BslFI	GGGAC	2 cut(s)	908, 1147
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	2 cut(s)	1087, 1140
BsmFI	GGGAC	2 cut(s)	908, 1147
BsnI	GGCC	3 cut(s)	253, 616, 1052
BsoBI	CYCGRG	1 cut(s)	1143
Bsp1286I	GDGCHC	4 cut(s)	477, 554, 708, 819
Bsp143I	GATC	4 cut(s)	22, 116, 327, 670
BspACI	CCGC	3 cut(s)	254, 718, 836
BspANI	GGCC	3 cut(s)	253, 616, 1052
BspCNI	CTCAG	2 cut(s)	121, 666
BspHI	TCATGA	1 cut(s)	1068
BspLI	GGNNCC	5 cut(s)	6, 70, 237, 521, 924
BspMAI	CTGCAG	1 cut(s)	911
BspPI	GGATC	1 cut(s)	678
BspQI	GCTCTTC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	17, 492
BssECI	CCNNGG	3 cut(s)	261, 617, 889
BssMI	GATC	4 cut(s)	22, 116, 327, 670
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	261, 889
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	2 cut(s)	305, 693
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	501, 505, 614
BstDEI	CTNAG	3 cut(s)	129, 674, 992
BstF5I	GGATG	3 cut(s)	404, 448, 1135
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	25, 119, 330, 673
BstMAI	GTCTC	2 cut(s)	1087, 1140
BstMBI	GATC	4 cut(s)	22, 116, 327, 670
BstNI	CCWGG	1 cut(s)	618
BstSCI	CCNGG	3 cut(s)	231, 522, 616
BstSFI	CTRYAG	1 cut(s)	907
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	2 cut(s)	302, 893
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
BsuRI	GGCC	3 cut(s)	253, 616, 1052
BtsCI	GGATG	3 cut(s)	404, 448, 1135
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	3 cut(s)	501, 505, 614
CciI	TCATGA	1 cut(s)	1068
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	794, 922
Csp6I	GTAC	3 cut(s)	19, 446, 485
CviAII	CATG	5 cut(s)	111, 461, 580, 1069, 1194
CviQI	GTAC	3 cut(s)	19, 446, 485
DdeI	CTNAG	3 cut(s)	129, 674, 992
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	24, 118, 329, 672
DpnII	GATC	4 cut(s)	22, 116, 327, 670
DraI	TTTAAA	1 cut(s)	456
DraIII	CACNNNGTG	1 cut(s)	879
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	475
Eco130I	CCWWGG	2 cut(s)	261, 889
Eco24I	GRGCYC	2 cut(s)	477, 554
Eco47I	GGWCC	2 cut(s)	794, 922
Eco53kI	GAGCTC	1 cut(s)	475
Eco57I	CTGAAG	2 cut(s)	329, 444
Eco88I	CYCGRG	1 cut(s)	1143
EcoICRI	GAGCTC	1 cut(s)	475
EcoO109I	RGGNCCY	2 cut(s)	794, 922
EcoRII	CCWGG	1 cut(s)	616
EcoT14I	CCWWGG	2 cut(s)	261, 889
EcoT38I	GRGCYC	2 cut(s)	477, 554
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	261, 889
FaeI	CATG	5 cut(s)	114, 464, 583, 1072, 1197
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FaqI	GGGAC	2 cut(s)	908, 1147
FatI	CATG	5 cut(s)	110, 460, 579, 1068, 1193
FauI	CCCGC	1 cut(s)	829
Fnu4HI	GCNGC	4 cut(s)	254, 291, 718, 907
FokI	GGATG	3 cut(s)	411, 435, 1142
FriOI	GRGCYC	2 cut(s)	477, 554
Fsp4HI	GCNGC	4 cut(s)	254, 291, 718, 907
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	254, 291, 718, 907
GsaI	CCCAGC	1 cut(s)	626
GsuI	CTGGAG	1 cut(s)	750
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	253, 616, 1052
HapII	CCGG	2 cut(s)	233, 523
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	114, 464, 583, 1072, 1197
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	6 cut(s)	216, 439, 830, 953, 1185, 1198
HpaII	CCGG	2 cut(s)	233, 523
HphI	GGTGA	3 cut(s)	418, 638, 1132
Hpy166II	GTNNAC	2 cut(s)	706, 861
Hpy188I	TCNGA	7 cut(s)	309, 568, 675, 952, 958, 1030, 1092
Hpy188III	TCNNGA	4 cut(s)	29, 767, 1038, 1069
Hpy8I	GTNNAC	2 cut(s)	706, 861
HpyAV	CCTTC	6 cut(s)	304, 419, 564, 1021, 1097, 1120
HpyCH4III	ACNGT	2 cut(s)	305, 693
HpyCH4V	TGCA	7 cut(s)	76, 98, 105, 161, 612, 706, 909
HpyF3I	CTNAG	3 cut(s)	129, 674, 992
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	114, 464, 583, 1072, 1197
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	22, 116, 327, 670
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	3 cut(s)	480, 769, 966
Lsp1109I	GCAGC	2 cut(s)	302, 893
LweI	GCATC	1 cut(s)	1034
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	4 cut(s)	24, 118, 329, 672
MboI	GATC	4 cut(s)	22, 116, 327, 670
MboII	GAAGA	5 cut(s)	17, 44, 758, 999, 1184
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	4 cut(s)	477, 554, 708, 819
MluCI	AATT	8 cut(s)	243, 296, 468, 631, 770, 1054, 1157, 1175
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	448, 947
MmeI	TCCRAC	1 cut(s)	930
MseI	TTAA	7 cut(s)	173, 342, 455, 810, 896, 1119, 1178
MslI	CAYNNNNRTG	1 cut(s)	578
MspA1I	CMGCKG	2 cut(s)	293, 836
MspI	CCGG	2 cut(s)	233, 523
MspR9I	CCNGG	3 cut(s)	233, 524, 618
MvaI	CCWGG	1 cut(s)	618
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	233, 524
NdeII	GATC	4 cut(s)	22, 116, 327, 670
NlaIII	CATG	5 cut(s)	114, 464, 583, 1072, 1197
NlaIV	GGNNCC	5 cut(s)	6, 70, 237, 521, 924
PagI	TCATGA	1 cut(s)	1068
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	216, 830, 1185, 1198
Pfl23II	CGTACG	1 cut(s)	18
PkrI	GCNGC	4 cut(s)	255, 292, 719, 908
PleI	GAGTC	2 cut(s)	447, 947
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	447, 947
PpuMI	RGGWCCY	2 cut(s)	794, 922
PsiI	TTATAA	1 cut(s)	684
Psp124BI	GAGCTC	1 cut(s)	477
Psp5II	RGGWCCY	2 cut(s)	794, 922
Psp6I	CCWGG	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	616
PspLI	CGTACG	1 cut(s)	18
PspN4I	GGNNCC	5 cut(s)	6, 70, 237, 521, 924
PspPI	GGNCC	2 cut(s)	794, 922
PspPPI	RGGWCCY	2 cut(s)	794, 922
PsrI	GAACNNNNNNTAC	2 cut(s)	988, 1020
PstI	CTGCAG	1 cut(s)	911
PsuI	RGATCY	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	20, 447, 486
RsaNI	GTAC	3 cut(s)	19, 446, 485
RseI	CAYNNNNRTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	477
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	7 cut(s)	173, 342, 455, 810, 896, 1119, 1178
SatI	GCNGC	4 cut(s)	254, 291, 718, 907
Sau3AI	GATC	4 cut(s)	22, 116, 327, 670
Sau96I	GGNCC	2 cut(s)	794, 922
SchI	GAGTC	2 cut(s)	448, 947
ScrFI	CCNGG	3 cut(s)	233, 524, 618
SduI	GDGCHC	4 cut(s)	477, 554, 708, 819
SfaNI	GCATC	1 cut(s)	1034
SfcI	CTRYAG	1 cut(s)	907
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	794, 922
SmiMI	CAYNNNNRTG	1 cut(s)	578
Sse9I	AATT	8 cut(s)	243, 296, 468, 631, 770, 1054, 1157, 1175
SsiI	CCGC	3 cut(s)	254, 718, 836
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	2 cut(s)	157, 357
SstI	GAGCTC	1 cut(s)	477
StyD4I	CCNGG	3 cut(s)	231, 522, 616
StyI	CCWWGG	2 cut(s)	261, 889
TaaI	ACNGT	2 cut(s)	305, 693
TaqI	TCGA	2 cut(s)	548, 1020
TasI	AATT	8 cut(s)	243, 296, 468, 631, 770, 1054, 1157, 1175
TatI	WGTACW	1 cut(s)	484
TauI	GCSGC	2 cut(s)	256, 720
TfiI	GAWTC	4 cut(s)	216, 830, 1185, 1198
Tru1I	TTAA	7 cut(s)	173, 342, 455, 810, 896, 1119, 1178
Tru9I	TTAA	7 cut(s)	173, 342, 455, 810, 896, 1119, 1178
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	2 cut(s)	290, 906
TspDTI	ATGAA	6 cut(s)	378, 1057, 1085, 1139, 1182, 1185
TspRI	CASTG	1 cut(s)	133
VneI	GTGCAC	1 cut(s)	704
VpaK11BI	GGWCC	2 cut(s)	794, 922
XapI	RAATTY	3 cut(s)	296, 770, 1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.