FvH4_7g21590

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000399
Physical Location & Seq
Forward (+)
17239262 .. 17240612
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21590.t1

Sequence Viewer

Length: 1158 bp
ATGGGAGAAACGACGATTCGTAATTCTCGAAGAAAGAAGAACGTGGCGACTACATTAGCTGATTGGTCGACCCTTCATCAAGATTTTATTAACTGTTTCGCGCATCAAGTAGTTTCCATGAAGGATTTCTTTGCTTTTGGAGGAGTTTCCAAATCATGGAGATCAGCGATCAAGGAAAATTCTAATACAGCTTTAAGATTACAGCATAAAGTTCCAGTCCTCATTCTTTCAAAGGAGATCAACGCTCCCGTCCGCAATATCTACAGCTTGACAGAATGTCAGATTTCCCAGCTTGATTTACCAGAAACTAAGGGCAAACTTTGCTATTCTTCTCTAGGATGGTTGTTGACTGTATCCCAAGATTATTCCACACTTGATCTTTTTAATCCATTAACCCATGCCCATATTGAGCTACCTCCTCTGCCACCAAAAAAATTCTCGCTTCGTAACTTGAAGAGGTTTGTATTGTCATCGAGCCCTTCTTTTACATCGGATTATGGGGTCATGCTTCTATCATATCATCATTTAGCTTTCTACAAGCCGGGTTACAACAATGGTACATGGACTCTGGGGCCTATACCTTTACCGGAGCCGTTAACATTAGTTGATGCAGTTTATTACAAGGGACAATTTTATGTGGTGGACTGTCGTGGTAAGGTTTTTGTTTGTAAGATCGAAGATCCTAATAATGCAGCACAAATGAGGCTTGTGGCTCCAGAGATTCCTGAACAACTCTTCGGCGAAGATATTCATTTTATTGCACGATATTTAGTGGAATCAGCAACAGGGACCCTGTTATTGGTTGTCACTTTATACGAAGACAACTGTGAAGTAACTACTGGTTGTAGGGTGTTCGAGGTGCCGATTGATACAAGTAATTCATGGGCAAAATCAGAAGTAAAGAATTTGGGGAATACAACCTTGTTTGTGGGTGCAAACAATTCTTCATTCTGGATTGAGCCCTTGGATGATTCTGTATGCAAAGCCAATTGTATTTATTTCCTAAACCGGAGCCACGTCTCTACGGCAAATGACATCGACATTGGTATTTACCATATGAAGGATGGAAAAATGGACAAACACTTGGAAGAATTGCCAGATTTTAAGTACAAAGGAAGTTCATTAACATCGCATTCATGGCTTCAACCGAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

386

Amino Acids

43.47

Weight (kDa)

6.63

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 88 - 351 3e-45 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 859
AccB7I CCANNNNNTGG 1 cut(s) 156
AccI GTMKAC 1 cut(s) 68
AccII CGCG 1 cut(s) 101
AciI CCGC 1 cut(s) 253
AclWI GGATC 1 cut(s) 674
AcsI RAATTY 3 cut(s) 178, 434, 904
AfaI GTAC 2 cut(s) 559, 1109
AfiI CCNNNNNNNGG 3 cut(s) 156, 799, 1060
AgsI TTSAA 3 cut(s) 231, 454, 1145
AhdI GACNNNNNGTC 1 cut(s) 276
AjiI CACGTC 1 cut(s) 1018
AluBI AGCT 6 cut(s) 59, 191, 267, 292, 412, 530
AluI AGCT 6 cut(s) 59, 191, 267, 292, 412, 530
Alw26I GTCTC 1 cut(s) 1024
AlwI GGATC 1 cut(s) 674
AoxI GGCC 1 cut(s) 572
ApeKI GCWGC 1 cut(s) 692
ApoI RAATTY 3 cut(s) 178, 434, 904
Asp700I GAANNNNTTC 2 cut(s) 125, 747
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 2 cut(s) 572, 789
AsuC2I CCSGG 1 cut(s) 543
AvaII GGWCC 1 cut(s) 789
BanI GGYRCC 1 cut(s) 859
BanII GRGCYC 2 cut(s) 479, 963
BbsI GAAGAC 1 cut(s) 825
BbvI GCAGC 1 cut(s) 704
BccI CCATC 2 cut(s) 333, 1058
BceAI ACGGC 2 cut(s) 577, 1041
BciVI GTATCC 1 cut(s) 364
BcnI CCSGG 1 cut(s) 543
BcoDI GTCTC 1 cut(s) 1024
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 262
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 1 cut(s) 693
BlsI GCNGC 1 cut(s) 694
Bme1390I CCNGG 1 cut(s) 543
Bme18I GGWCC 1 cut(s) 789
BmeRI GACNNNNNGTC 1 cut(s) 276
BmgBI CACGTC 1 cut(s) 1018
BmgT120I GGNCC 2 cut(s) 572, 789
BmiI GGNNCC 7 cut(s) 573, 591, 714, 790, 791, 861, 1013
BmrFI CCNGG 1 cut(s) 543
BmsI GCATC 2 cut(s) 112, 598
BpiI GAAGAC 1 cut(s) 825
BpmI CTGGAG 1 cut(s) 699
BpuMI CCSGG 1 cut(s) 543
BsaJI CCNNGG 1 cut(s) 963
BsaWI WCCGGW 2 cut(s) 586, 1008
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 799, 1060
Bse1I ACTGG 2 cut(s) 215, 844
BseDI CCNNGG 1 cut(s) 963
BseGI GGATG 3 cut(s) 344, 973, 1069
BseLI CCNNNNNNNGG 3 cut(s) 156, 799, 1060
BseNI ACTGG 2 cut(s) 215, 844
BseRI GAGGAG 2 cut(s) 156, 408
BseXI GCAGC 1 cut(s) 704
BseYI CCCAGC 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 1 cut(s) 574
BshNI GGYRCC 1 cut(s) 859
BsiSI CCGG 3 cut(s) 542, 587, 1009
BslFI GGGAC 2 cut(s) 639, 802
BslI CCNNNNNNNGG 3 cut(s) 156, 799, 1060
BsmAI GTCTC 1 cut(s) 1024
BsmBI CGTCTC 1 cut(s) 1024
BsmFI GGGAC 2 cut(s) 639, 802
BsmI GAATGC 1 cut(s) 1132
BsnI GGCC 1 cut(s) 574
Bsp1286I GDGCHC 2 cut(s) 479, 963
Bsp143I GATC 6 cut(s) 161, 168, 237, 376, 672, 679
BspACI CCGC 1 cut(s) 253
BspANI GGCC 1 cut(s) 574
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 7 cut(s) 573, 591, 714, 790, 791, 861, 1013
BspPI GGATC 1 cut(s) 674
BspT107I GGYRCC 1 cut(s) 859
BsrI ACTGG 2 cut(s) 215, 844
BssECI CCNNGG 1 cut(s) 963
BssMI GATC 6 cut(s) 161, 168, 237, 376, 672, 679
BssT1I CCWWGG 1 cut(s) 963
Bst4CI ACNGT 4 cut(s) 95, 352, 647, 827
Bst6I CTCTTC 2 cut(s) 449, 740
BstAPI GCANNNNNTGC 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 3 cut(s) 344, 973, 1069
BstFNI CGCG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 6 cut(s) 164, 171, 240, 379, 675, 682
BstMAI GTCTC 1 cut(s) 1024
BstMBI GATC 6 cut(s) 161, 168, 237, 376, 672, 679
BstMWI GCNNNNNNNGC 2 cut(s) 321, 1138
BstSCI CCNGG 1 cut(s) 541
BstSFI CTRYAG 1 cut(s) 262
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 704
BstV2I GAAGAC 1 cut(s) 825
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 574
BtgZI GCGATG 1 cut(s) 1113
BtrI CACGTC 1 cut(s) 1018
BtsCI GGATG 3 cut(s) 344, 973, 1069
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 2 cut(s) 572, 789
Csp6I GTAC 2 cut(s) 558, 1108
CviAII CATG 7 cut(s) 118, 156, 398, 505, 561, 882, 1137
CviQI GTAC 2 cut(s) 558, 1108
DdeI CTNAG 1 cut(s) 309
DpnI GATC 6 cut(s) 163, 170, 239, 378, 674, 681
DpnII GATC 6 cut(s) 161, 168, 237, 376, 672, 679
DriI GACNNNNNGTC 1 cut(s) 276
Eam1104I CTCTTC 2 cut(s) 449, 740
Eam1105I GACNNNNNGTC 1 cut(s) 276
EarI CTCTTC 2 cut(s) 449, 740
Eco130I CCWWGG 1 cut(s) 963
Eco24I GRGCYC 2 cut(s) 479, 963
Eco47I GGWCC 1 cut(s) 789
EcoO109I RGGNCCY 2 cut(s) 572, 789
EcoT14I CCWWGG 1 cut(s) 963
EcoT38I GRGCYC 2 cut(s) 479, 963
ErhI CCWWGG 1 cut(s) 963
Esp3I CGTCTC 1 cut(s) 1024
FaeI CATG 7 cut(s) 121, 159, 401, 508, 564, 885, 1140
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 2 cut(s) 639, 802
FatI CATG 7 cut(s) 117, 155, 397, 504, 560, 881, 1136
FauNDI CATATG 1 cut(s) 1056
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 693
FokI GGATG 3 cut(s) 351, 980, 1076
FriOI GRGCYC 2 cut(s) 479, 963
Fsp4HI GCNGC 1 cut(s) 693
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 693
GsaI CCCAGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 699
HaeIII GGCC 1 cut(s) 574
HapII CCGG 3 cut(s) 542, 587, 1009
HhaI GCGC 1 cut(s) 103
Hin1II CATG 7 cut(s) 121, 159, 401, 508, 564, 885, 1140
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HincII GTYRAC 3 cut(s) 69, 348, 597
HindII GTYRAC 3 cut(s) 69, 348, 597
HinfI GANTC 5 cut(s) 16, 565, 721, 776, 971
HpaI GTTAAC 1 cut(s) 597
HpaII CCGG 3 cut(s) 542, 587, 1009
Hpy166II GTNNAC 4 cut(s) 69, 348, 597, 643
Hpy188I TCNGA 3 cut(s) 282, 493, 895
Hpy188III TCNNGA 5 cut(s) 27, 80, 716, 725, 952
Hpy8I GTNNAC 4 cut(s) 69, 348, 597, 643
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 4 cut(s) 83, 115, 489, 1054
HpyCH4III ACNGT 4 cut(s) 95, 352, 647, 827
HpyCH4IV ACGT 2 cut(s) 42, 1017
HpyCH4V TGCA 5 cut(s) 611, 692, 761, 935, 981
HpyF10VI GCNNNNNNNGC 2 cut(s) 321, 1138
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 2 cut(s) 42, 1017
Hsp92II CATG 7 cut(s) 121, 159, 401, 508, 564, 885, 1140
HspAI GCGC 1 cut(s) 101
KflI GGGWCCC 1 cut(s) 789
KspAI GTTAAC 1 cut(s) 597
Kzo9I GATC 6 cut(s) 161, 168, 237, 376, 672, 679
LmnI GCTCC 4 cut(s) 250, 589, 718, 1011
Lsp1109I GCAGC 1 cut(s) 704
LweI GCATC 2 cut(s) 112, 598
MaeI CTAG 1 cut(s) 335
MaeII ACGT 2 cut(s) 42, 1017
MaeIII GTNAC 4 cut(s) 446, 545, 805, 832
MalI GATC 6 cut(s) 163, 170, 239, 378, 674, 681
MboI GATC 6 cut(s) 161, 168, 237, 376, 672, 679
MfeI CAATTG 1 cut(s) 988
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 2 cut(s) 479, 963
MluCI AATT 9 cut(s) 22, 178, 434, 629, 877, 904, 940, 988, 1091
MlyI GAGTC 1 cut(s) 559
MnlI CCTC 7 cut(s) 134, 230, 426, 429, 450, 696, 850
MroXI GAANNNNTTC 2 cut(s) 125, 747
MseI TTAA 7 cut(s) 90, 194, 384, 392, 596, 1104, 1124
MspI CCGG 3 cut(s) 542, 587, 1009
MspR9I CCNGG 1 cut(s) 543
MunI CAATTG 1 cut(s) 988
Mva1269I GAATGC 1 cut(s) 1132
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 321, 1138
NciI CCSGG 1 cut(s) 543
NdeI CATATG 1 cut(s) 1056
NdeII GATC 6 cut(s) 161, 168, 237, 376, 672, 679
NlaIII CATG 7 cut(s) 121, 159, 401, 508, 564, 885, 1140
NlaIV GGNNCC 7 cut(s) 573, 591, 714, 790, 791, 861, 1013
NmuCI GTSAC 1 cut(s) 805
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PctI GAATGC 1 cut(s) 1132
PdmI GAANNNNTTC 2 cut(s) 125, 747
PfeI GAWTC 4 cut(s) 16, 721, 776, 971
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 1 cut(s) 694
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
PpuMI RGGWCCY 1 cut(s) 789
Psp5II RGGWCCY 1 cut(s) 789
PspFI CCCAGC 1 cut(s) 288
PspN4I GGNNCC 7 cut(s) 573, 591, 714, 790, 791, 861, 1013
PspPI GGNCC 2 cut(s) 572, 789
PspPPI RGGWCCY 1 cut(s) 789
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 2 cut(s) 559, 1109
RsaNI GTAC 2 cut(s) 558, 1108
SalI GTCGAC 1 cut(s) 67
SaqAI TTAA 7 cut(s) 90, 194, 384, 392, 596, 1104, 1124
SatI GCNGC 1 cut(s) 693
Sau3AI GATC 6 cut(s) 161, 168, 237, 376, 672, 679
Sau96I GGNCC 2 cut(s) 572, 789
SchI GAGTC 1 cut(s) 559
ScrFI CCNGG 1 cut(s) 543
SduI GDGCHC 2 cut(s) 479, 963
SfaNI GCATC 2 cut(s) 112, 598
SfcI CTRYAG 1 cut(s) 262
SinI GGWCC 1 cut(s) 789
Sse9I AATT 9 cut(s) 22, 178, 434, 629, 877, 904, 940, 988, 1091
SsiI CCGC 1 cut(s) 253
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 541
StyI CCWWGG 1 cut(s) 963
TaaI ACNGT 4 cut(s) 95, 352, 647, 827
TaiI ACGT 2 cut(s) 45, 1020
TaqI TCGA 6 cut(s) 28, 68, 473, 675, 855, 1038
TasI AATT 9 cut(s) 22, 178, 434, 629, 877, 904, 940, 988, 1091
TatI WGTACW 1 cut(s) 1107
TfiI GAWTC 4 cut(s) 16, 721, 776, 971
Tru1I TTAA 7 cut(s) 90, 194, 384, 392, 596, 1104, 1124
Tru9I TTAA 7 cut(s) 90, 194, 384, 392, 596, 1104, 1124
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 1 cut(s) 692
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 8 cut(s) 65, 134, 740, 870, 936, 1073, 1110, 1125
Van91I CCANNNNNTGG 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 789
XapI RAATTY 3 cut(s) 178, 434, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 1061
XmiI GTMKAC 1 cut(s) 68
XmnI GAANNNNTTC 2 cut(s) 125, 747
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.