Rw1G029080

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000399
Physical Location & Seq
Reverse (-)
56730266 .. 56731331
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029080.1

Sequence Viewer

Length: 945 bp
ATGGGAGCAACAATTAGTAATTATCAAACAAAGAAGGACTGGATGAGTCTTCATCAAGATATTGTCATCTGTTTTGCAGGGCAAATAGTTTCCATGAAAGATTTTGAATACTCTAATAGAGGATTAAGATTGAAGCATAAAGCTCCGGTCCTTCTCCTTCCAAAGGAGATCAGCGATCCCCTCGACAAATATTACAGCCTGACAAAAGGAAAGATTTACCAACTTGATTTACCAGAAACTCGCGGGAAGACGTGCTATTCTTCTCCCAAATTGAGTTGCCACCTCTGCCGTTTTGCCTTATCTTCGAGCCCTTCTTGGACATCGGATTATGCAGTCATGGTTCAAGGAGAATATGGTTTGGCAATTTACAGAACAGGATACAATAATTGCAGTTGGACAGTATTAAAGACGATGGGGAAATTCAGGGATACAGTTTATTATGAAGGACACTTTTATGTGGTGGACTATGAAGGTCGTGTTTTTGTTTGCGATGTGGAAGATTCTGAAAATGCACACTTGAGACTAGTTGCTCCAGAGATTCCAAAGGAAATCTTAGGCCCTATAACTCATATTAAAAGGCTATATTTAGTGGAATTACCGGCTGGGATCCTTTTCATAGTTGTGTTTCTTTGTTACACATCTACACTTGGTCTAACTGATGGTTGTAAGGTGTTCCAGGTACCATTTGTTAATGGCAATAGTTCGTGGTCCAAATCAGAGGTAATGAATTGGGGAAATACAACCATATTTTTGGGCATTAACAATTCTTCATTCTCAATTGAGGTCTTAGACGATTCTAGATATTGGGATAATGGGATGCGACAACGCCTCGACATAGGTACTTATTATATGGAGAACGAAAAAATAGAGCAGAAGTTTGACAAATCCATTGACATTCTTCTAAGCAAAAGAACATTGCATTTATGGATTCAACCAAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

314

Amino Acids

36.1

Weight (kDa)

7.03

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 92 - 262 1e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 679
AccII CGCG 1 cut(s) 243
AciI CCGC 1 cut(s) 243
AclWI GGATC 3 cut(s) 170, 601, 614
AcsI RAATTY 1 cut(s) 419
AfaI GTAC 2 cut(s) 681, 841
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 4 cut(s) 107, 133, 344, 932
AhlI ACTAGT 1 cut(s) 523
AjiI CACGTC 1 cut(s) 252
AjnI CCWGG 1 cut(s) 675
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 514
AlwI GGATC 3 cut(s) 170, 601, 614
AoxI GGCC 1 cut(s) 556
ApoI RAATTY 1 cut(s) 419
Asp718I GGTACC 1 cut(s) 679
AspS9I GGNCC 3 cut(s) 148, 557, 708
AvaII GGWCC 2 cut(s) 148, 708
BamHI GGATCC 1 cut(s) 606
BanI GGYRCC 1 cut(s) 679
BanII GRGCYC 1 cut(s) 311
BbsI GAAGAC 2 cut(s) 41, 254
BccI CCATC 2 cut(s) 406, 653
BceAI ACGGC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 677
BciVI GTATCC 2 cut(s) 371, 421
BcoDI GTCTC 1 cut(s) 514
BcuI ACTAGT 1 cut(s) 523
BfaI CTAG 2 cut(s) 524, 798
BfuI GTATCC 2 cut(s) 371, 421
Bme1390I CCNGG 1 cut(s) 677
Bme18I GGWCC 2 cut(s) 148, 708
BmgBI CACGTC 1 cut(s) 252
BmgT120I GGNCC 3 cut(s) 148, 557, 708
BmiI GGNNCC 2 cut(s) 608, 681
BmrFI CCNGG 1 cut(s) 677
BmsI GCATC 1 cut(s) 807
BpiI GAAGAC 2 cut(s) 41, 254
BpmI CTGGAG 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 538
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse118I RCCGGY 1 cut(s) 598
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 914
BseBI CCWGG 1 cut(s) 677
BseGI GGATG 2 cut(s) 48, 822
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 914
BseNI ACTGG 1 cut(s) 44
BseYI CCCAGC 1 cut(s) 602
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 558
BshNI GGYRCC 1 cut(s) 679
BsiSI CCGG 2 cut(s) 146, 599
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 514
BsnI GGCC 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 3 cut(s) 168, 175, 606
BspACI CCGC 1 cut(s) 243
BspANI GGCC 1 cut(s) 558
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 608, 681
BspPI GGATC 3 cut(s) 170, 601, 614
BspT107I GGYRCC 1 cut(s) 679
BsrDI GCAATG 1 cut(s) 914
BsrFI RCCGGY 1 cut(s) 598
BsrI ACTGG 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 598
BssMI GATC 3 cut(s) 168, 175, 606
Bst2UI CCWGG 1 cut(s) 677
Bst4CI ACNGT 2 cut(s) 400, 433
BstDEI CTNAG 3 cut(s) 553, 787, 902
BstENI CCTNNNNNAGG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 48, 822
BstFNI CGCG 1 cut(s) 243
BstKTI GATC 3 cut(s) 171, 178, 609
BstMAI GTCTC 1 cut(s) 514
BstMBI GATC 3 cut(s) 168, 175, 606
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstNI CCWGG 1 cut(s) 677
BstSCI CCNGG 1 cut(s) 675
BstUI CGCG 1 cut(s) 243
BstV2I GAAGAC 2 cut(s) 41, 254
BstX2I RGATCY 1 cut(s) 606
BstXI CCANNNNNNTGG 1 cut(s) 751
BstYI RGATCY 1 cut(s) 606
BsuI GTATCC 2 cut(s) 371, 421
BsuRI GGCC 1 cut(s) 558
BtgZI GCGATG 1 cut(s) 504
BtrI CACGTC 1 cut(s) 252
BtsCI GGATG 2 cut(s) 48, 822
Cfr10I RCCGGY 1 cut(s) 598
Cfr13I GGNCC 3 cut(s) 148, 557, 708
Csp6I GTAC 2 cut(s) 680, 840
CviAII CATG 2 cut(s) 94, 337
CviJI RGCY 6 cut(s) 143, 198, 309, 558, 580, 602
CviKI_1 RGCY 6 cut(s) 143, 198, 309, 558, 580, 602
CviQI GTAC 2 cut(s) 680, 840
DdeI CTNAG 3 cut(s) 553, 787, 902
DpnI GATC 3 cut(s) 170, 177, 608
DpnII GATC 3 cut(s) 168, 175, 606
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 148, 708
EcoNI CCTNNNNNAGG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 675
EcoT38I GRGCYC 1 cut(s) 311
FaeI CATG 2 cut(s) 97, 340
FalI AAGNNNNNCTT 2 cut(s) 536, 568
FatI CATG 2 cut(s) 93, 336
FauI CCCGC 1 cut(s) 236
FokI GGATG 2 cut(s) 55, 829
FriOI GRGCYC 1 cut(s) 311
FspBI CTAG 2 cut(s) 524, 798
GsaI CCCAGC 1 cut(s) 606
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 1 cut(s) 558
HapII CCGG 2 cut(s) 146, 599
Hin1II CATG 2 cut(s) 97, 340
HinfI GANTC 5 cut(s) 46, 500, 538, 794, 928
HpaII CCGG 2 cut(s) 146, 599
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 3 cut(s) 325, 505, 718
Hpy188III TCNNGA 3 cut(s) 56, 533, 798
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 6 cut(s) 28, 161, 167, 321, 437, 464
HpyCH4III ACNGT 2 cut(s) 400, 433
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 5 cut(s) 77, 332, 390, 512, 919
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 3 cut(s) 553, 787, 902
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 2 cut(s) 97, 340
KpnI GGTACC 1 cut(s) 683
Kzo9I GATC 3 cut(s) 168, 175, 606
LmnI GCTCC 3 cut(s) 5, 148, 535
LweI GCATC 1 cut(s) 807
MaeI CTAG 2 cut(s) 524, 798
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 632
MalI GATC 3 cut(s) 170, 177, 608
MboI GATC 3 cut(s) 168, 175, 606
MboII GAAGA 7 cut(s) 41, 252, 259, 294, 509, 759, 890
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 1 cut(s) 311
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 6 cut(s) 113, 191, 293, 712, 775, 839
MseI TTAA 5 cut(s) 125, 404, 573, 690, 759
MslI CAYNNNNRTG 2 cut(s) 453, 620
MspI CCGG 2 cut(s) 146, 599
MspR9I CCNGG 1 cut(s) 677
MunI CAATTG 1 cut(s) 777
MvaI CCWGG 1 cut(s) 677
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeII GATC 3 cut(s) 168, 175, 606
NlaIII CATG 2 cut(s) 97, 340
NlaIV GGNNCC 2 cut(s) 608, 681
PfeI GAWTC 4 cut(s) 500, 538, 794, 928
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 675
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 675
PspN4I GGNNCC 2 cut(s) 608, 681
PspPI GGNCC 3 cut(s) 148, 557, 708
PsuI RGATCY 1 cut(s) 606
RsaI GTAC 2 cut(s) 681, 841
RsaNI GTAC 2 cut(s) 680, 840
RseI CAYNNNNRTG 2 cut(s) 453, 620
SaqAI TTAA 5 cut(s) 125, 404, 573, 690, 759
Sau3AI GATC 3 cut(s) 168, 175, 606
Sau96I GGNCC 3 cut(s) 148, 557, 708
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 677
SduI GDGCHC 1 cut(s) 311
SetI ASST 9 cut(s) 145, 254, 285, 475, 672, 681, 723, 786, 841
SfaNI GCATC 1 cut(s) 807
SinI GGWCC 2 cut(s) 148, 708
SmiMI CAYNNNNRTG 2 cut(s) 453, 620
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
SpeI ACTAGT 1 cut(s) 523
SsiI CCGC 1 cut(s) 243
SspI AATATT 1 cut(s) 191
SspMI CTAG 2 cut(s) 524, 798
StyD4I CCNGG 1 cut(s) 675
TaaI ACNGT 2 cut(s) 400, 433
TaiI ACGT 1 cut(s) 254
TaqI TCGA 3 cut(s) 183, 305, 831
TfiI GAWTC 4 cut(s) 500, 538, 794, 928
Tru1I TTAA 5 cut(s) 125, 404, 573, 690, 759
Tru9I TTAA 5 cut(s) 125, 404, 573, 690, 759
TspDTI ATGAA 7 cut(s) 41, 110, 456, 483, 604, 740, 759
VpaK11BI GGWCC 2 cut(s) 148, 708
XagI CCTNNNNNAGG 1 cut(s) 161
XapI RAATTY 1 cut(s) 419
XbaI TCTAGA 1 cut(s) 797
XspI CTAG 2 cut(s) 524, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.