MD05G1357800.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000399
Physical Location & Seq
Forward (+)
47337519 .. 47338601
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1357800.v1.1.491

Sequence Viewer

Length: 1083 bp
ATGGCTCAGTGGTCCGATCTTCCTCATGATCTCGTCGTCTCCATCGCCAAGAGATTGCTTCTCTTGGAGGATTTTATTGTTTTTGGTGCGGTTTGTAGATCATGGAAATCCGCAGCGACCAAGGAGAACTTTACTAGAACACATCAAGTTCCATTACTTTTGCTTCCGGAGAAGAAGGGCACTACCCTCCGTGAGTTTTACAGCTTGAAACATGGCAAGGTTTTCAAACAAAATATGCCAGAATTAGTTACGGGAAAGTTGTTTTATTCTTCCCTAGGATGGTTGATGACTCAGTCTGATAAAGATTCGGAAGTTAATTTGTTGCATCCTTTAAATCATATGTGCATTGAGCTTCCAGACGTTGAAACATTTAAGAATCTTCACTCGAAAGATGAACATCGAAAACTGTTTGGTGATTTCATCGTGGGGAAATTTGTCTTGTCATCAAGCCCTTCATGGACATCGGATTATACTGTCATGATTCACAGTTGTAAAAGACTGGCAATTTGCAGACCGGGCTTGGGAGACCAACAATGGAACATCATAGATTCGTCGAAAACAAATGATCGATTGTATTTCGATATAACTTATTATGAGGGAAAATTTTATGCAGTGGACTACTTCGGCGAAATCTATGTATGTGAAACTGAAGATCCTAAGGCGCCAGCAAAAACAAGGATTATTGTCCCAAGGTTGCCGTACGAACTTAAAAGCCCTTACATCATTGAGAAACTATACCTTGTGGAATCGGCGGGGGCCTTGTTGCTCGTCATGTGTCCTTTAGAAACCATTGAGTGCTTCAGGGTTTTTGAGGTGCCAATGAGTGATGGAAATTGGTCGAACTCAGAGGTAAAAAACTTGGGAAACAGAAGTCTATTCCTAGGTTGTAATTCTTCATTTTCTGTTGAGGCGTCAAACTACGGATGTAAAGCAAATTGCATATATTACACGAATCGTCCACTTCAACGTCAACAAGGAGAGGACATGGGTATTTTTAACATGGAAGATGGAAAGGTCGAGTCGTACATAAAAGAATCACTCAATTTCCTAACTCCGCATTTGTGGGTTGAGCCTTGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

361

Amino Acids

41.35

Weight (kDa)

6.03

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 66 - 333 8.8e-54 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1081
AccB1I GGYRCC 2 cut(s) 661, 814
AccIII TCCGGA 1 cut(s) 166
AciI CCGC 4 cut(s) 89, 111, 752, 1055
AclWI GGATC 1 cut(s) 647
AcsI RAATTY 2 cut(s) 431, 602
AcuI CTGAAG 2 cut(s) 669, 784
AcyI GRCGYC 2 cut(s) 662, 911
AfaI GTAC 2 cut(s) 701, 1025
AfiI CCNNNNNNNGG 2 cut(s) 279, 521
AgsI TTSAA 4 cut(s) 208, 226, 365, 965
AluBI AGCT 2 cut(s) 204, 352
AluI AGCT 2 cut(s) 204, 352
Alw26I GTCTC 2 cut(s) 43, 519
AlwI GGATC 1 cut(s) 647
Aor13HI TCCGGA 1 cut(s) 166
AoxI GGCC 1 cut(s) 756
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 431, 602
ArsI GACNNNNNNTTYG 2 cut(s) 489, 521
AspA2I CCTAGG 2 cut(s) 274, 880
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 2 cut(s) 12, 756
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 1 cut(s) 425
AvaII GGWCC 1 cut(s) 12
AvrII CCTAGG 2 cut(s) 274, 880
AxyI CCTNAGG 1 cut(s) 657
BaeGI GKGCMC 1 cut(s) 182
BanI GGYRCC 2 cut(s) 661, 814
BbvI GCAGC 1 cut(s) 125
BccI CCATC 4 cut(s) 50, 273, 821, 1001
BceAI ACGGC 1 cut(s) 682
BcnI CCSGG 1 cut(s) 516
BcoDI GTCTC 2 cut(s) 43, 519
BfaI CTAG 3 cut(s) 135, 275, 881
BfoI RGCGCY 1 cut(s) 665
BisI GCNGC 1 cut(s) 114
BlnI CCTAGG 2 cut(s) 274, 880
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 516
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 2 cut(s) 12, 756
BmiI GGNNCC 3 cut(s) 663, 757, 816
BmrFI CCNGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 334
BpuMI CCSGG 1 cut(s) 516
Bsa29I ATCGAT 1 cut(s) 568
BsaBI GATNNNNATC 1 cut(s) 396
BsaHI GRCGYC 2 cut(s) 662, 911
BsaI GGTCTC 1 cut(s) 519
BsaJI CCNNGG 4 cut(s) 120, 274, 689, 880
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 521
Bse1I ACTGG 1 cut(s) 504
Bse21I CCTNAGG 1 cut(s) 657
Bse8I GATNNNNATC 1 cut(s) 396
BseAI TCCGGA 1 cut(s) 166
BseCI ATCGAT 1 cut(s) 568
BseDI CCNNGG 4 cut(s) 120, 274, 689, 880
BseGI GGATG 3 cut(s) 284, 325, 929
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 2 cut(s) 279, 521
BseMII CTCAG 3 cut(s) 20, 305, 858
BseNI ACTGG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 758
BshNI GGYRCC 2 cut(s) 661, 814
BshVI ATCGAT 1 cut(s) 568
BsiSI CCGG 2 cut(s) 167, 515
BsiWI CGTACG 1 cut(s) 699
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 2 cut(s) 279, 521
BsmAI GTCTC 2 cut(s) 43, 519
BsmBI CGTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 671
BsnI GGCC 1 cut(s) 758
Bso31I GGTCTC 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 182
Bsp13I TCCGGA 1 cut(s) 166
Bsp143I GATC 5 cut(s) 16, 28, 98, 565, 652
BspACI CCGC 4 cut(s) 89, 111, 752, 1055
BspANI GGCC 1 cut(s) 758
BspCNI CTCAG 3 cut(s) 19, 304, 857
BspDI ATCGAT 1 cut(s) 568
BspEI TCCGGA 1 cut(s) 166
BspHI TCATGA 2 cut(s) 25, 477
BspLI GGNNCC 3 cut(s) 663, 757, 816
BspPI GGATC 1 cut(s) 647
BspT107I GGYRCC 2 cut(s) 661, 814
BspTNI GGTCTC 1 cut(s) 519
BsrI ACTGG 1 cut(s) 504
BssECI CCNNGG 4 cut(s) 120, 274, 689, 880
BssMI GATC 5 cut(s) 16, 28, 98, 565, 652
BssNI GRCGYC 2 cut(s) 662, 911
BssT1I CCWWGG 4 cut(s) 120, 274, 689, 880
Bst4CI ACNGT 3 cut(s) 408, 475, 488
BstACI GRCGYC 2 cut(s) 662, 911
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 4 cut(s) 6, 291, 657, 844
BstF5I GGATG 3 cut(s) 284, 325, 929
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 5 cut(s) 19, 31, 101, 568, 655
BstMAI GTCTC 2 cut(s) 43, 519
BstMBI GATC 5 cut(s) 16, 28, 98, 565, 652
BstMWI GCNNNNNNNGC 1 cut(s) 516
BstSCI CCNGG 1 cut(s) 514
BstSLI GKGCMC 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 652
BstYI RGATCY 1 cut(s) 652
Bsu15I ATCGAT 1 cut(s) 568
Bsu36I CCTNAGG 1 cut(s) 657
BsuRI GGCC 1 cut(s) 758
BsuTUI ATCGAT 1 cut(s) 568
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 3 cut(s) 284, 325, 929
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 2 cut(s) 14, 618
Cac8I GCNNGC 1 cut(s) 666
CciI TCATGA 2 cut(s) 25, 477
CfoI GCGC 1 cut(s) 664
Cfr13I GGNCC 2 cut(s) 12, 756
ClaI ATCGAT 1 cut(s) 568
CseI GACGC 1 cut(s) 900
Csp6I GTAC 2 cut(s) 700, 1024
CviAII CATG 8 cut(s) 26, 102, 212, 456, 478, 772, 985, 1000
CviJI RGCY 8 cut(s) 5, 204, 352, 450, 519, 714, 758, 1072
CviKI_1 RGCY 8 cut(s) 5, 204, 352, 450, 519, 714, 758, 1072
CviQI GTAC 2 cut(s) 700, 1024
DdeI CTNAG 4 cut(s) 6, 291, 657, 844
DinI GGCGCC 1 cut(s) 663
DpnI GATC 5 cut(s) 18, 30, 100, 567, 654
DpnII GATC 5 cut(s) 16, 28, 98, 565, 652
DraI TTTAAA 1 cut(s) 333
Eco130I CCWWGG 4 cut(s) 120, 274, 689, 880
Eco31I GGTCTC 1 cut(s) 519
Eco47I GGWCC 1 cut(s) 12
Eco57I CTGAAG 2 cut(s) 669, 784
Eco81I CCTNAGG 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 756
EcoT14I CCWWGG 4 cut(s) 120, 274, 689, 880
EgeI GGCGCC 1 cut(s) 663
EheI GGCGCC 1 cut(s) 663
ErhI CCWWGG 4 cut(s) 120, 274, 689, 880
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 8 cut(s) 29, 105, 215, 459, 481, 775, 988, 1003
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 671
FatI CATG 8 cut(s) 25, 101, 211, 455, 477, 771, 984, 999
FauI CCCGC 1 cut(s) 745
FauNDI CATATG 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 3 cut(s) 291, 312, 936
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 3 cut(s) 135, 275, 881
GlaI GCGC 1 cut(s) 663
GluI GCNGC 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 665
HaeIII GGCC 1 cut(s) 758
HapII CCGG 2 cut(s) 167, 515
HgaI GACGC 1 cut(s) 900
HhaI GCGC 1 cut(s) 664
Hin1I GRCGYC 2 cut(s) 662, 911
Hin1II CATG 8 cut(s) 29, 105, 215, 459, 481, 775, 988, 1003
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HincII GTYRAC 1 cut(s) 971
HindII GTYRAC 1 cut(s) 971
HinfI GANTC 9 cut(s) 289, 305, 376, 481, 548, 746, 952, 1019, 1034
HpaII CCGG 2 cut(s) 167, 515
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 3 cut(s) 616, 959, 971
Hpy188I TCNGA 5 cut(s) 16, 298, 310, 466, 847
Hpy188III TCNNGA 4 cut(s) 26, 167, 356, 478
Hpy8I GTNNAC 3 cut(s) 616, 959, 971
Hpy99I CGWCG 2 cut(s) 38, 556
HpyAV CCTTC 2 cut(s) 169, 462
HpyCH4III ACNGT 3 cut(s) 408, 475, 488
HpyCH4IV ACGT 2 cut(s) 360, 967
HpyCH4V TGCA 5 cut(s) 325, 345, 510, 611, 939
HpyF10VI GCNNNNNNNGC 1 cut(s) 516
HpyF3I CTNAG 4 cut(s) 6, 291, 657, 844
HpySE526I ACGT 2 cut(s) 360, 967
Hsp92I GRCGYC 2 cut(s) 662, 911
Hsp92II CATG 8 cut(s) 29, 105, 215, 459, 481, 775, 988, 1003
HspAI GCGC 1 cut(s) 662
KasI GGCGCC 1 cut(s) 661
Kpn2I TCCGGA 1 cut(s) 166
Kzo9I GATC 5 cut(s) 16, 28, 98, 565, 652
LpnPI CCDG 7 cut(s) 180, 252, 369, 485, 528, 678, 787
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 1 cut(s) 334
MaeI CTAG 3 cut(s) 135, 275, 881
MaeII ACGT 2 cut(s) 360, 967
MaeIII GTNAC 1 cut(s) 247
MalI GATC 5 cut(s) 18, 30, 100, 567, 654
MboI GATC 5 cut(s) 16, 28, 98, 565, 652
MboII GAAGA 7 cut(s) 11, 184, 261, 371, 662, 885, 1016
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 9 cut(s) 242, 316, 431, 504, 602, 832, 889, 934, 1042
Mly113I GGCGCC 1 cut(s) 662
MlyI GAGTC 2 cut(s) 283, 1028
MnlI CCTC 8 cut(s) 33, 61, 197, 589, 805, 841, 901, 973
MroI TCCGGA 1 cut(s) 166
MseI TTAA 5 cut(s) 315, 332, 372, 708, 996
MspI CCGG 2 cut(s) 167, 515
MspR9I CCNGG 1 cut(s) 516
MwoI GCNNNNNNNGC 1 cut(s) 516
NarI GGCGCC 1 cut(s) 662
NciI CCSGG 1 cut(s) 516
NdeI CATATG 1 cut(s) 339
NdeII GATC 5 cut(s) 16, 28, 98, 565, 652
NlaIII CATG 8 cut(s) 29, 105, 215, 459, 481, 775, 988, 1003
NlaIV GGNNCC 3 cut(s) 663, 757, 816
PagI TCATGA 2 cut(s) 25, 477
PfeI GAWTC 7 cut(s) 305, 376, 481, 548, 746, 952, 1034
Pfl23II CGTACG 1 cut(s) 699
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 2 cut(s) 283, 1027
PluTI GGCGCC 1 cut(s) 665
PpsI GAGTC 2 cut(s) 283, 1027
PsiI TTATAA 1 cut(s) 1081
PspLI CGTACG 1 cut(s) 699
PspN4I GGNNCC 3 cut(s) 663, 757, 816
PspPI GGNCC 2 cut(s) 12, 756
PsuI RGATCY 1 cut(s) 652
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 2 cut(s) 701, 1025
RsaNI GTAC 2 cut(s) 700, 1024
SaqAI TTAA 5 cut(s) 315, 332, 372, 708, 996
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 5 cut(s) 16, 28, 98, 565, 652
Sau96I GGNCC 2 cut(s) 12, 756
SchI GAGTC 2 cut(s) 283, 1028
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 1 cut(s) 182
SfaNI GCATC 1 cut(s) 334
SfoI GGCGCC 1 cut(s) 663
SinI GGWCC 1 cut(s) 12
Sse9I AATT 9 cut(s) 242, 316, 431, 504, 602, 832, 889, 934, 1042
SsiI CCGC 4 cut(s) 89, 111, 752, 1055
SspDI GGCGCC 1 cut(s) 661
SspMI CTAG 3 cut(s) 135, 275, 881
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 4 cut(s) 120, 274, 689, 880
TaaI ACNGT 3 cut(s) 408, 475, 488
TaiI ACGT 2 cut(s) 363, 970
TaqI TCGA 7 cut(s) 386, 400, 554, 568, 579, 839, 1017
TasI AATT 9 cut(s) 242, 316, 431, 504, 602, 832, 889, 934, 1042
TfiI GAWTC 7 cut(s) 305, 376, 481, 548, 746, 952, 1034
Tru1I TTAA 5 cut(s) 315, 332, 372, 708, 996
Tru9I TTAA 5 cut(s) 315, 332, 372, 708, 996
TscAI CASTG 2 cut(s) 14, 618
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 4 cut(s) 408, 409, 444, 885
TspGWI ACGGA 2 cut(s) 179, 936
TspRI CASTG 2 cut(s) 14, 618
Tth111I GACNNNGTC 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 2 cut(s) 431, 602
XmaJI CCTAGG 2 cut(s) 274, 880
XspI CTAG 3 cut(s) 135, 275, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.