Rmu_sc0002290.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002290.1
OG0000399
Physical Location & Seq
Forward (+)
60 .. 1127
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002290.1_g000001.1.cds

Sequence Viewer

Length: 960 bp
atgtcttcattggctaactggtcagatcttcctcaagatcttgctatctctattgctaagctgatggtttgcatggaggactttttatcttttggggcggtctgtaaatcatggagatccactgccacaaaagaaaactttactggtggattaaaacatcaagttccgttccttatattacccgagaaggagggcatggccaatcatgcaaaagttttaacgctattgcatcctttaaatcatgcccaaatcaagttaccagagaacttccgatacgaatttataaagtcgtttgccttatcagcaagtccttccttgacatcggatttcgttgtcatggttctttatcattgccgcaggggattggctttttgcagagccaaggacaacgaatggactagagtggatgcaaccaaaaggggaaacaattcctactttgatctcacttattatagggagcaattttatgccttggatcttcatggccgtgttttggtttgtgacattgaagaccctaagaaagcaaaaacgcgggtagttgttccacagataccaagggatacaagttttgaagattatccgaccagattatacctggtggaatcagcaggaaccttacttgttgtacgagtgggctatcaagataaaaccattgcgtttagggtttttgaggtgccatttagcaattgcgattggtcatactccgaagttaagaatttgggaaatagaaccttgttcttgaatgttttaggttcttccttttcaattgaggcttcaaactactccggcgtcaagtccaattgcatatacttcagatctattctgttcagtttggacgaaggagcgggctcgggcatgtgtatctttgatacggaagatgaaaaaagtgacttgcgtggggtttttataaactcttctagttttgcaatgtcctatttatggatccaacccagtttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

319

Amino Acids

36.22

Weight (kDa)

6.6

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 284, 908
AccB1I GGYRCC 1 cut(s) 673
AccBSI CCGCTC 1 cut(s) 845
AccII CGCG 1 cut(s) 532
AciI CCGC 4 cut(s) 98, 355, 532, 845
AclWI GGATC 4 cut(s) 111, 483, 937, 950
AcoI YGGCCR 2 cut(s) 198, 484
AcsI RAATTY 2 cut(s) 278, 715
AcuI CTGAAG 1 cut(s) 796
AcyI GRCGYC 1 cut(s) 789
AfaI GTAC 1 cut(s) 627
AfiI CCNNNNNNNGG 2 cut(s) 493, 939
AgsI TTSAA 5 cut(s) 509, 572, 742, 765, 777
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
AlwI GGATC 4 cut(s) 111, 483, 937, 950
Ama87I CYCGRG 2 cut(s) 182, 850
AoxI GGCC 2 cut(s) 198, 484
ApoI RAATTY 2 cut(s) 278, 715
Asp700I GAANNNNTTC 1 cut(s) 427
AvaI CYCGRG 2 cut(s) 182, 850
BalI TGGCCA 1 cut(s) 200
BamHI GGATCC 1 cut(s) 942
BanI GGYRCC 1 cut(s) 673
BanII GRGCYC 1 cut(s) 851
BbsI GAAGAC 1 cut(s) 516
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 471
BciT130I CCWGG 1 cut(s) 596
BciVI GTATCC 1 cut(s) 553
BfaI CTAG 2 cut(s) 399, 918
BfuI GTATCC 1 cut(s) 553
BglII AGATCT 3 cut(s) 25, 37, 815
BisI GCNGC 1 cut(s) 355
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 596
BmeT110I CYCGRG 2 cut(s) 182, 850
BmiI GGNNCC 3 cut(s) 613, 675, 944
BmrFI CCNGG 1 cut(s) 596
BmrI ACTGGG 1 cut(s) 945
BmsI GCATC 2 cut(s) 238, 397
BmuI ACTGGG 1 cut(s) 945
BpiI GAAGAC 1 cut(s) 516
Bpu1102I GCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 789
BsaJI CCNNGG 3 cut(s) 381, 471, 554
Bsc4I CCNNNNNNNGG 2 cut(s) 493, 939
Bse1I ACTGG 3 cut(s) 23, 148, 951
Bse3DI GCAATG 3 cut(s) 349, 651, 933
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 3 cut(s) 381, 471, 554
BseGI GGATG 2 cut(s) 229, 412
BseLI CCNNNNNNNGG 2 cut(s) 493, 939
BseMI GCAATG 3 cut(s) 349, 651, 933
BseNI ACTGG 3 cut(s) 23, 148, 951
Bsh1236I CGCG 1 cut(s) 532
BshFI GGCC 2 cut(s) 200, 486
BshNI GGYRCC 1 cut(s) 673
BsiHKCI CYCGRG 2 cut(s) 182, 850
BsiSI CCGG 1 cut(s) 786
BslI CCNNNNNNNGG 2 cut(s) 493, 939
BsnI GGCC 2 cut(s) 200, 486
BsoBI CYCGRG 2 cut(s) 182, 850
Bsp1286I GDGCHC 1 cut(s) 851
Bsp143I GATC 7 cut(s) 25, 37, 116, 439, 475, 815, 942
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 4 cut(s) 98, 355, 532, 845
BspANI GGCC 2 cut(s) 200, 486
BspFNI CGCG 1 cut(s) 532
BspLI GGNNCC 3 cut(s) 613, 675, 944
BspPI GGATC 4 cut(s) 111, 483, 937, 950
BspT107I GGYRCC 1 cut(s) 673
BsrBI CCGCTC 1 cut(s) 845
BsrDI GCAATG 3 cut(s) 349, 651, 933
BsrI ACTGG 3 cut(s) 23, 148, 951
BssECI CCNNGG 3 cut(s) 381, 471, 554
BssMI GATC 7 cut(s) 25, 37, 116, 439, 475, 815, 942
BssNI GRCGYC 1 cut(s) 789
BssT1I CCWWGG 3 cut(s) 381, 471, 554
Bst2UI CCWGG 1 cut(s) 596
Bst6I CTCTTC 1 cut(s) 919
BstACI GRCGYC 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 847
BstDEI CTNAG 2 cut(s) 57, 516
BstF5I GGATG 2 cut(s) 229, 412
BstFNI CGCG 1 cut(s) 532
BstKTI GATC 7 cut(s) 28, 40, 119, 442, 478, 818, 945
BstMBI GATC 7 cut(s) 25, 37, 116, 439, 475, 815, 942
BstMWI GCNNNNNNNGC 2 cut(s) 206, 302
BstNI CCWGG 1 cut(s) 596
BstNSI RCATGY 1 cut(s) 859
BstSCI CCNGG 1 cut(s) 594
BstUI CGCG 1 cut(s) 532
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 6 cut(s) 25, 37, 116, 475, 815, 942
BstYI RGATCY 6 cut(s) 25, 37, 116, 475, 815, 942
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 2 cut(s) 200, 486
BtsCI GGATG 2 cut(s) 229, 412
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 847
CseI GACGC 1 cut(s) 778
CsiI ACCWGGT 1 cut(s) 594
Csp6I GTAC 1 cut(s) 626
CviAII CATG 8 cut(s) 73, 111, 196, 206, 242, 337, 482, 856
CviJI RGCY 9 cut(s) 14, 61, 200, 368, 380, 486, 636, 773, 849
CviKI_1 RGCY 9 cut(s) 14, 61, 200, 368, 380, 486, 636, 773, 849
CviQI GTAC 1 cut(s) 626
DdeI CTNAG 2 cut(s) 57, 516
DpnI GATC 7 cut(s) 27, 39, 118, 441, 477, 817, 944
DpnII GATC 7 cut(s) 25, 37, 116, 439, 475, 815, 942
DraI TTTAAA 1 cut(s) 237
EaeI YGGCCR 2 cut(s) 198, 484
Eam1104I CTCTTC 1 cut(s) 919
EarI CTCTTC 1 cut(s) 919
Eco130I CCWWGG 3 cut(s) 381, 471, 554
Eco24I GRGCYC 1 cut(s) 851
Eco57I CTGAAG 1 cut(s) 796
Eco88I CYCGRG 2 cut(s) 182, 850
EcoRII CCWGG 1 cut(s) 594
EcoT14I CCWWGG 3 cut(s) 381, 471, 554
EcoT38I GRGCYC 1 cut(s) 851
ErhI CCWWGG 3 cut(s) 381, 471, 554
FaeI CATG 8 cut(s) 76, 114, 199, 209, 245, 340, 485, 859
FatI CATG 8 cut(s) 72, 110, 195, 205, 241, 336, 481, 855
FauI CCCGC 2 cut(s) 525, 838
Fnu4HI GCNGC 1 cut(s) 355
FokI GGATG 2 cut(s) 216, 419
FriOI GRGCYC 1 cut(s) 851
Fsp4HI GCNGC 1 cut(s) 355
FspBI CTAG 2 cut(s) 399, 918
GluI GCNGC 1 cut(s) 355
HaeIII GGCC 2 cut(s) 200, 486
HapII CCGG 1 cut(s) 786
HgaI GACGC 1 cut(s) 778
Hin1I GRCGYC 1 cut(s) 789
Hin1II CATG 8 cut(s) 76, 114, 199, 209, 245, 340, 485, 859
HinfI GANTC 1 cut(s) 602
HpaII CCGG 1 cut(s) 786
Hpy188I TCNGA 6 cut(s) 25, 272, 325, 582, 706, 815
Hpy188III TCNNGA 3 cut(s) 35, 641, 739
HpyAV CCTTC 3 cut(s) 181, 321, 833
HpyCH4V TGCA 7 cut(s) 72, 209, 229, 375, 410, 804, 926
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 302
HpyF3I CTNAG 2 cut(s) 57, 516
Hsp92I GRCGYC 1 cut(s) 789
Hsp92II CATG 8 cut(s) 76, 114, 199, 209, 245, 340, 485, 859
Kzo9I GATC 7 cut(s) 25, 37, 116, 439, 475, 815, 942
LmnI GCTCC 2 cut(s) 457, 842
LpnPI CCDG 9 cut(s) 4, 129, 273, 343, 581, 594, 598, 608, 799
LweI GCATC 2 cut(s) 238, 397
MabI ACCWGGT 1 cut(s) 594
MaeI CTAG 2 cut(s) 399, 918
MaeIII GTNAC 3 cut(s) 255, 500, 887
MalI GATC 7 cut(s) 27, 39, 118, 441, 477, 817, 944
MbiI CCGCTC 1 cut(s) 845
MboI GATC 7 cut(s) 25, 37, 116, 439, 475, 815, 942
MboII GAAGA 7 cut(s) 20, 470, 521, 584, 747, 887, 906
MfeI CAATTG 3 cut(s) 685, 765, 799
MflI RGATCY 6 cut(s) 25, 37, 116, 475, 815, 942
MhlI GDGCHC 1 cut(s) 851
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 7 cut(s) 278, 427, 461, 685, 715, 765, 799
MluNI TGGCCA 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 605
MnlI CCTC 5 cut(s) 42, 70, 184, 664, 763
Mox20I TGGCCA 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 427
MscI TGGCCA 1 cut(s) 200
MseI TTAA 5 cut(s) 152, 218, 236, 711, 958
MslI CAYNNNNRTG 1 cut(s) 486
Msp20I TGGCCA 1 cut(s) 200
MspI CCGG 1 cut(s) 786
MspR9I CCNGG 1 cut(s) 596
MunI CAATTG 3 cut(s) 685, 765, 799
MvaI CCWGG 1 cut(s) 596
MvnI CGCG 1 cut(s) 532
MwoI GCNNNNNNNGC 2 cut(s) 206, 302
NdeII GATC 7 cut(s) 25, 37, 116, 439, 475, 815, 942
NlaIII CATG 8 cut(s) 76, 114, 199, 209, 245, 340, 485, 859
NlaIV GGNNCC 3 cut(s) 613, 675, 944
NmuCI GTSAC 2 cut(s) 500, 887
NspI RCATGY 1 cut(s) 859
PdmI GAANNNNTTC 1 cut(s) 427
PfeI GAWTC 1 cut(s) 602
PkrI GCNGC 1 cut(s) 356
PsiI TTATAA 2 cut(s) 284, 908
Psp6I CCWGG 1 cut(s) 594
PspGI CCWGG 1 cut(s) 594
PspN4I GGNNCC 3 cut(s) 613, 675, 944
PsrI GAACNNNNNNTAC 2 cut(s) 257, 289
PsuI RGATCY 6 cut(s) 25, 37, 116, 475, 815, 942
RsaI GTAC 1 cut(s) 627
RsaNI GTAC 1 cut(s) 626
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 5 cut(s) 152, 218, 236, 711, 958
SatI GCNGC 1 cut(s) 355
Sau3AI GATC 7 cut(s) 25, 37, 116, 439, 475, 815, 942
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 1 cut(s) 851
SetI ASST 6 cut(s) 63, 597, 617, 675, 734, 754
SexAI ACCWGGT 1 cut(s) 594
SfaNI GCATC 2 cut(s) 238, 397
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 7 cut(s) 278, 427, 461, 685, 715, 765, 799
SsiI CCGC 4 cut(s) 98, 355, 532, 845
SspMI CTAG 2 cut(s) 399, 918
StyD4I CCNGG 1 cut(s) 594
StyI CCWWGG 3 cut(s) 381, 471, 554
TasI AATT 7 cut(s) 278, 427, 461, 685, 715, 765, 799
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 5 cut(s) 152, 218, 236, 711, 958
Tru9I TTAA 5 cut(s) 152, 218, 236, 711, 958
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 2 cut(s) 500, 887
Tsp45I GTSAC 2 cut(s) 500, 887
TspDTI ATGAA 2 cut(s) 470, 894
TspGWI ACGGA 2 cut(s) 156, 887
TspRI CASTG 1 cut(s) 127
XapI RAATTY 2 cut(s) 278, 715
XceI RCATGY 1 cut(s) 859
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XmnI GAANNNNTTC 1 cut(s) 427
XspI CTAG 2 cut(s) 399, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.